Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8107512.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 315

Gene Structure 314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8107512.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 199 bp

atgatgatagctgctgggtattcagatggtagtataagaatttgggattctgagaaagggacctgtgagactacactcaatggacataaaaaggctgtcactgccttacggtatgacaagcttggatctaagcttgcttctggaagcaaagatgacgacattatattatgggatgtggtcggtgagagcggcctatatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

66

Amino Acids

7.14

Weight (kDa)

5.11

Isoelectric Point (pI)

19.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	39
AluBI	AGCT	3 cut(s)	11, 121, 133
AluI	AGCT	3 cut(s)	11, 121, 133
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	60
BccI	CCATC	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	12, 190
BlsI	GCNGC	2 cut(s)	13, 191
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	61
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	189
BssMI	GATC	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	51, 129
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	60
CviJI	RGCY	5 cut(s)	11, 95, 121, 133, 192
CviKI_1	RGCY	5 cut(s)	11, 95, 121, 133, 192
DdeI	CTNAG	2 cut(s)	51, 129
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	60
FaiI	YATR	6 cut(s)	35, 87, 114, 164, 169, 196
FaqI	GGGAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	12, 190
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	12, 190
GluI	GCNGC	2 cut(s)	12, 190
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	192
HindIII	AAGCTT	2 cut(s)	119, 131
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	25, 52
Hpy188III	TCNNGA	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	51, 129
Kzo9I	GATC	1 cut(s)	125
LpnPI	CCDG	2 cut(s)	76, 126
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	127
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	1 cut(s)	125
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	13, 191
PpuMI	RGGWCCY	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	60
PspPPI	RGGWCCY	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	125
SatI	GCNGC	2 cut(s)	12, 190
Sau3AI	GATC	1 cut(s)	125
Sau96I	GGNCC	1 cut(s)	60
SetI	ASST	4 cut(s)	13, 65, 123, 135
SgeI	CNNG	6 cut(s)	27, 75, 130, 134, 146, 153
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	111
TasI	AATT	1 cut(s)	39
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.