Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

50100101 .. 50109378

Gene Structure 9278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG328900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGATCACTTGGAGGGACAATCTAGCCAGAGTGCGGGTCTCTCTACAGAAATGGAGCAAATCTGCATTTCCTACTTCCCATGCCCAGGGTGGAAATATGGAGATTATTGACACCGGGAATGCCACTGTCACTGAAGTAGTGGACGCTCATGGTGGTTCTGTTCAATCTATTGTAAGACTTCCCAATGAAAATGGTTTTGTCACAGGAAGTTTGGATGGTTATGTTAAGTTCTGGGAATATGAAGTCAAACAAAAGTCTCCCCAAGTATACTATATGGACCTTATTTGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

97

Amino Acids

10.94

Weight (kDa)

6.05

Isoelectric Point (pI)

24.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	29 - 86	2.9e-10	WDR3 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	33, 85
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	43, 261
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	277
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	86
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	43, 261
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	86, 115
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	86, 115
BpuMI	CCSGG	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	84, 85
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 85
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	84, 85
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	33, 85
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	33, 85
BsmAI	GTCTC	2 cut(s)	43, 261
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	84, 85
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	43, 261
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	84, 113
BstSFI	CTRYAG	1 cut(s)	44
BstZ17I	GTATAC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	123, 129
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	152
CviAII	CATG	2 cut(s)	80, 149
CviJI	RGCY	1 cut(s)	26
CviKI_1	RGCY	1 cut(s)	26
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	83, 152
FaiI	YATR	9 cut(s)	81, 98, 150, 222, 240, 268, 273, 275, 292
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	79, 148
FauI	CCCGC	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	1 cut(s)	227
FspBI	CTAG	1 cut(s)	23
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	83, 152
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	142, 268
Hpy8I	GTNNAC	2 cut(s)	142, 268
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	83, 152
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	40, 71, 98, 127, 189, 217
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	127, 199
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MnlI	CCTC	1 cut(s)	6
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	86, 115
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	86
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	83, 152
NmuCI	GTSAC	2 cut(s)	127, 199
PasI	CCCWGGG	1 cut(s)	85
PctI	GAATGC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	86, 115
SetI	ASST	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	277
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	84, 113
TaaI	ACNGT	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	130, 136
TseFI	GTSAC	2 cut(s)	127, 199
Tsp45I	GTSAC	2 cut(s)	127, 199
TspDTI	ATGAA	2 cut(s)	201, 255
TspRI	CASTG	2 cut(s)	130, 136
VpaK11BI	GGWCC	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.