Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

15248821 .. 15249514

Gene Structure 694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0182600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCTCTATTTCCCAGCTCTTCGTAATTGTTGCGATGCTAGCAATTTTTACTCCTACAATTTTCGCAACGGATTTTATTGTCGGTGACGACAAAGGTTGGACCATTGATGTCGACTACCAAGCTTGGGCTCAGGGAAAGCAGTTCTACGTTGGCGATAACCTTGTTTTTAACTACCCAGTAGGTGTTCACAATGTGCTGAAGGTGAATGGAACTGGTTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTAGCATTAACAGGTGGGAAAGACGTGATAAACTTAGCAACCCCAGGGAGGAAATGGTACATCTGTGGTGTGTCTAAACACTGTGAAGTCGGACCCCAGAAGCTTTTCATAACTGTGACGCCAGCTTCCTTTGCTCCCAGCCCAAGCCCTACTACCTCTGCAGCAAGTATAAGGGGTAATGGAGCAAGATATGGGTGGATCATCGTTACTGTTGGCACCATTCTTGGGATGCTCATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

163

Amino Acids

17.29

Weight (kDa)

7.7

Isoelectric Point (pI)

20.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	34 - 114	1.1e-24	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	127, 297, 474
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	5 cut(s)	19, 125, 236, 352, 374
AluI	AGCT	5 cut(s)	19, 125, 236, 352, 374
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	2 cut(s)	239, 248
AoxI	GGCC	2 cut(s)	3, 486
ApeKI	GCWGC	2 cut(s)	233, 410
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	102, 341
AsuHPI	GGTGA	2 cut(s)	98, 217
AsuNHI	GCTAGC	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	102, 341
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BanI	GGYRCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	245, 422
BciT130I	CCWGG	1 cut(s)	294
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	3 cut(s)	240, 249, 408
BisI	GCNGC	2 cut(s)	234, 411
BlsI	GCNGC	2 cut(s)	235, 412
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	2 cut(s)	102, 341
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	102, 341
BmiI	GGNNCC	2 cut(s)	343, 466
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	27, 468
BmtI	GCTAGC	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	292, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 297, 474
Bse1I	ACTGG	2 cut(s)	179, 220
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	292, 293
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	3 cut(s)	127, 297, 474
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	179, 220
BseXI	GCAGC	2 cut(s)	245, 422
BseYI	CCCAGC	2 cut(s)	15, 386
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	5, 488
BshNI	GGYRCC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	127, 297, 474
BsnI	GGCC	2 cut(s)	5, 488
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	447
BspANI	GGCC	2 cut(s)	5, 488
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	343, 466
BspMAI	CTGCAG	2 cut(s)	244, 412
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	455
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	179, 220
BssECI	CCNNGG	2 cut(s)	292, 293
BssMI	GATC	1 cut(s)	447
BssNI	GRCGYC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	250, 332, 364, 460
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	42, 244, 372
BstDEI	CTNAG	2 cut(s)	132, 283
BstF5I	GGATG	1 cut(s)	483
BstKTI	GATC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 239, 380
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	3 cut(s)	240, 249, 408
BstV1I	GCAGC	2 cut(s)	245, 422
BsuRI	GGCC	2 cut(s)	5, 488
BtgZI	GCGATG	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	246, 328
Cac8I	GCNNGC	3 cut(s)	42, 244, 372
CaiI	CAGNNNCTG	2 cut(s)	239, 248
Cfr13I	GGNCC	2 cut(s)	102, 341
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	484
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	132, 283
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
DraIII	CACNNNGTG	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	102, 341
Eco57I	CTGAAG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	1 cut(s)	487
FaiI	YATR	4 cut(s)	359, 419, 441, 485
FatI	CATG	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	234, 411
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	234, 411
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	2 cut(s)	234, 411
GsaI	CCCAGC	2 cut(s)	19, 390
HaeIII	GGCC	2 cut(s)	5, 488
HgaI	GACGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	2 cut(s)	123, 350
HphI	GGTGA	2 cut(s)	98, 217
Hpy166II	GTNNAC	2 cut(s)	115, 190
Hpy188I	TCNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	115, 190
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	4 cut(s)	250, 332, 364, 460
HpyCH4IV	ACGT	2 cut(s)	150, 273
HpyCH4V	TGCA	3 cut(s)	233, 242, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 239, 380
HpyF3I	CTNAG	2 cut(s)	132, 283
HpySE526I	ACGT	2 cut(s)	150, 273
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	447
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	241, 388, 431
Lsp1109I	GCAGC	2 cut(s)	245, 422
LweI	GCATC	2 cut(s)	27, 468
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	2 cut(s)	150, 273
MaeIII	GTNAC	3 cut(s)	86, 364, 454
MalI	GATC	1 cut(s)	449
MboI	GATC	1 cut(s)	447
MboII	GAAGA	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	3 cut(s)	27, 45, 60
MmeI	TCCRAC	2 cut(s)	80, 319
MnlI	CCTC	3 cut(s)	16, 291, 415
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	2 cut(s)	171, 257
MslI	CAYNNNNRTG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	41, 239, 380
NdeII	GATC	1 cut(s)	447
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	2 cut(s)	343, 466
NmuCI	GTSAC	2 cut(s)	86, 364
PasI	CCCWGGG	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	235, 412
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	2 cut(s)	15, 386
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	343, 466
PspPI	GGNCC	2 cut(s)	102, 341
PstI	CTGCAG	2 cut(s)	244, 412
PstNI	CAGNNNCTG	2 cut(s)	239, 248
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	362
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	171, 257
SatI	GCNGC	2 cut(s)	234, 411
Sau3AI	GATC	1 cut(s)	447
Sau96I	GGNCC	2 cut(s)	102, 341
SbfI	CCTGCAGG	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	294
SdaI	CCTGCAGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	133
SfaNI	GCATC	2 cut(s)	27, 468
SfcI	CTRYAG	3 cut(s)	240, 249, 408
SinI	GGWCC	2 cut(s)	102, 341
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse8387I	CCTGCAGG	1 cut(s)	244
Sse9I	AATT	3 cut(s)	27, 45, 60
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	4 cut(s)	250, 332, 364, 460
TaiI	ACGT	2 cut(s)	153, 276
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	27, 45, 60
Tru1I	TTAA	2 cut(s)	171, 257
Tru9I	TTAA	2 cut(s)	171, 257
TscAI	CASTG	2 cut(s)	253, 335
TseFI	GTSAC	2 cut(s)	86, 364
TseI	GCWGC	2 cut(s)	233, 410
Tsp45I	GTSAC	2 cut(s)	86, 364
TspDTI	ATGAA	1 cut(s)	346
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	253, 335
VpaK11BI	GGWCC	2 cut(s)	102, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.