Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

22553869 .. 22560976

Gene Structure 7108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGGTGAAGTCGTACTTGCGATACGAGCAGGGTGGCGCCTTCGGCGTGATAGTTTCTGGCAATTCAAACATCGCCTACGACAGTTCCGGGAAGCACATTTTTGCCCCGGGCCTGGAAAAGGTGGGCGTGTGGAACGTGCGACAAGGCATTTGCATCAAAACCTTAACTCCTTCTGCTGCTGATGGATATTCGCCGCCAGTCACCTCCATCGCGGTCTCGCCTTCTTCTTCTTCTCTGCATAGAATTTGGGACTCTCAGAATAAAATTTGTGAGACCACATTCTACGGTCATACGGGGGCCGTTAGTGTCTTACGGTACAACAAGATTGGAGATAGGCTGGTTTCTGGTGGCCAAGATAAGGACATTATATTGTGGGATGTGGAGAGGGGCGAGGGCATCTATCGCCTCCGCGGGCATGGGAATCAGGTCACTGATCTCGTCTTCTTGGACTGTTGTAAGAAACTCGTTAGTTCCTCAAAAGACAAATTTTTGAAGGTCTGGGATCTTGAAACCCCCCATTGCATGCAGACAATAAGTGACCACCATAGTGAAATTTGGTCCATAGATATCGATCCGGAAGAAACATATTTGGTCTCTGGCTCTGCTGACTTGGAACTTAGGGTTTACACAATTAAGCATGACCTTAAAGCTTGCCAATCCACTTCTAATGCGAATGCAAATGCAACAGACTCTGGAGATCCATCCCCTCATAATAAATGGCAAGTTTTGAAGCTGTTTGTTGCAACTGTGAGATTCAACAAGTCTGGAAATTTGCTGGCGTGTCAAGAGGCAGGAAAGGCGGTACATATATTCAACGTACTGGATGAGGCTGAATCTACCCGTAAAGCAAACCGCAGGATTCGCTGGATCAAAAAGAAAAAGTCTGCCCAAGGGGAAGCCGAGGTGATGAAGGATGATGGAGCTGGAGAAGAGGGAAAGAGGCACGTGGTCATGGTCTCTGATGTTTTTCAACTTTTCCAAACTATCCGACCTGGCAAAAAGATATGTTCCATCTCTTTTTGTCCAAACCCTCCCAAGACTTCCCTAGCCACAATAGCTTTGTCTCTGAGCGATAATCTATGCGTGTTTTATTCTCTTGAGAGCGAAGCAACAAAACAAACACGCGCTGTAGACCTCCATGGCCACCGATCATCTGTCACAAGTGTAGCGCTTAGCTCAGACAACACAGTTTTGATGTCAACCAGTCATAATGCAGTAAAGATCTGGAATCCAACCAATGGTTACTGCCTTGGAACTATTGACACAGGATTCGCCATGTGTGCTTTTATCCTTCCTTCTTGCAATAACAAGTTTGCACTTGTTGGAACCAAGGGTGGAACAATGGAAATTATTGACATTGGGAGTGCAACTGTCACTGAAGTAGTAGAAGCACATGGTGGCTCTGTTCAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGGAGTCAAAGAAGATTCTAAGCGCCTGCTAGTGTCAAATGTAAGAATGAAGGAGATGGATACTGATGTTCGTGTGGTTTCTATCAGTCCTGATGCCAAATATCTTTTGGTGGCGTTGGATACCATAGTAAAGGACGAGAGGGAAAAACGGGAGTTGGAAAAGATGTACGAGTCTGACTTCAAGGATGAATATGAGAACAATTTTGCACTCAAGGAAAAGATCCCTGCAGAGGGAGCTGTGGCTTTTGCTGGGAAGAAAACTAAAGAAACAATTTCTTTGACCGACTCAATTGTTGCTAAACTAGAAATAGCATGGGAAGAATCAAAGCGACGAGCCAATTATGAGGCGGAAAAAGTCAGTGGAAAGCTGGTTGCTGAGTTTCAACCAAATCCTTTTATGCTGGGGCTGTCTCCTCCTGATTATTTTCTGCATGAACTTTTGAAGGTTAAGACAAGCGATTTGGAGTCGATGCTATTGGGGCTACCCTTCTCGGATGCCTTGAAGATTTGGTCTTTCTGCAAGGATGTTGGTCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACATTGCTGCTGCAGATAAATTGTAATCAATTGATTTCCACTCCAGCTGTAAAACCAATATTGACCGGTTTGAAAGAGGTTCTTTATCCCAACTTAAAGGCAAAGAAGGATATCATTGGTTACAACCTTGCAGCAATGACTCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGGTGCCATCTCCAAGCGTGGTGTAGGTGCAAGTTGGTATGGAAAGACAGAAGAAGCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

768

Amino Acids

84.56

Weight (kDa)

7.01

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	20 - 178	2.3e-09	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	23 - 139	7.8e-10	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	32 - 211	4.1e-58	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	40 - 183	4.7e-12	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	67 - 220	5.3e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	71 - 213	2.3e-27	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	71 - 203	3.3e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	80 - 210	7.7e-09	WDR36/Utp21 first beta-propeller
Beta-prop_SCAP	PF24017	80 - 171	1e-09	SCAP Beta-propeller
WD40_CDC20-Fz	PF24807	83 - 221	1.5e-14	CDC20/Fizzy WD40 domain
Beta-prop_WDR41	PF25178	85 - 215	9.8e-10	WDR41
WD40_MABP1-WDR62_2nd	PF24782	85 - 169	5.2e-07	MABP1/WDR62 second WD40 domain
WDR55	PF24796	87 - 222	2e-11	WDR55
Beta-prop_TEP1_2nd	PF25047	88 - 235	1.9e-11	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	92 - 210	3.7e-18	WDR3 second beta-propeller domain
EIF3I	PF24805	94 - 178	3.8e-10	EIF3I
WD40_Gbeta	PF25391	96 - 216	9.8e-13	G protein beta WD-40 repeat protein
Beta-prop_Aladin	PF25460	97 - 224	3e-06	Aladin seven-bladed propeller
WD40_Prp19	PF24814	110 - 225	9.9e-20	Prp19 WD40 domain
EIF3I	PF24805	136 - 214	1.2e-08	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	136 - 259	3.1e-11	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	146 - 272	2.3e-08	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	334 - 561	8.3e-16	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	352 - 532	8.1e-08	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	352 - 532	9.8e-12	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	386 - 539	1.4e-35	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	404 - 512	7.4e-06	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	435 - 535	1.9e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	435 - 533	4.3e-08	THOC3 beta-propeller domain
Utp12	PF04003	636 - 736	1.7e-14	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 2243
AccB7I	CCANNNNNTGG	1 cut(s)	1238
AccI	GTMKAC	2 cut(s)	1131, 2017
AccII	CGCG	3 cut(s)	212, 411, 1125
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	7 cut(s)	194, 212, 409, 411, 800, 853, 1832
AclWI	GGATC	5 cut(s)	510, 566, 692, 875, 1699
AcoI	YGGCCR	2 cut(s)	349, 1141
AcsI	RAATTY	7 cut(s)	243, 264, 485, 552, 769, 1422, 2036
AcuI	CTGAAG	1 cut(s)	1398
AcvI	CACGTG	1 cut(s)	946
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	1397
AfaI	GTAC	5 cut(s)	14, 317, 804, 819, 1652
AfeI	AGCGCT	1 cut(s)	1170
AfiI	CCNNNNNNNGG	7 cut(s)	112, 118, 358, 1238, 1714, 1715, 2240
AgeI	ACCGGT	1 cut(s)	2120
AjnI	CCWGG	4 cut(s)	111, 991, 2045, 2239
AleI	CACNNNNGTG	1 cut(s)	546
AluBI	AGCT	9 cut(s)	650, 733, 923, 1058, 1176, 1455, 1721, 1852, 2102
AluI	AGCT	9 cut(s)	650, 733, 923, 1058, 1176, 1455, 1721, 1852, 2102
Alw26I	GTCTC	6 cut(s)	220, 266, 598, 961, 1068, 1899
AlwI	GGATC	5 cut(s)	510, 566, 692, 875, 1699
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	574
Aor51HI	AGCGCT	1 cut(s)	1170
AoxI	GGCC	4 cut(s)	109, 297, 349, 1141
ApeKI	GCWGC	4 cut(s)	176, 2062, 2065, 2186
ApoI	RAATTY	7 cut(s)	243, 264, 485, 552, 769, 1422, 2036
ArsI	GACNNNNNNTTYG	6 cut(s)	132, 164, 1253, 1285, 1927, 1959
AsiGI	ACCGGT	1 cut(s)	2120
AspLEI	GCGC	4 cut(s)	38, 1127, 1171, 1509
AspS9I	GGNCC	3 cut(s)	109, 297, 558
AsuC2I	CCSGG	3 cut(s)	88, 107, 108
AsuHPI	GGTGA	3 cut(s)	16, 193, 916
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	558
BaeI	ACNNNNGTAYC	4 cut(s)	1536, 1569, 1596, 1629
BalI	TGGCCA	2 cut(s)	351, 1143
BanI	GGYRCC	2 cut(s)	35, 2243
BbrPI	CACGTG	1 cut(s)	946
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	4 cut(s)	163, 2049, 2052, 2198
BccI	CCATC	8 cut(s)	176, 215, 709, 911, 1019, 1454, 1534, 2255
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	4 cut(s)	113, 993, 2047, 2241
BciVI	GTATCC	2 cut(s)	1537, 1597
BcnI	CCSGG	3 cut(s)	88, 107, 108
BcoDI	GTCTC	6 cut(s)	220, 266, 598, 961, 1068, 1899
BfaI	CTAG	3 cut(s)	1046, 1514, 1787
BfmI	CTRYAG	3 cut(s)	1128, 1710, 2066
BfoI	RGCGCY	3 cut(s)	39, 1172, 1510
BfuI	GTATCC	2 cut(s)	1537, 1597
BglII	AGATCT	1 cut(s)	1221
BisI	GCNGC	5 cut(s)	177, 194, 2063, 2066, 2187
BlpI	GCTNAGC	1 cut(s)	1172
BlsI	GCNGC	5 cut(s)	178, 195, 2064, 2067, 2188
Bme1390I	CCNGG	7 cut(s)	88, 107, 108, 113, 993, 2047, 2241
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	109, 297, 558
BmiI	GGNNCC	4 cut(s)	37, 298, 1327, 2245
BmrFI	CCNGG	7 cut(s)	88, 107, 108, 113, 993, 2047, 2241
BmsI	GCATC	5 cut(s)	162, 405, 1567, 1944, 1969
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	3 cut(s)	714, 945, 2082
Bpu1102I	GCTNAGC	1 cut(s)	1172
BpuEI	CTTGAG	2 cut(s)	1118, 1679
BpuMI	CCSGG	3 cut(s)	88, 107, 108
Bsa29I	ATCGAT	1 cut(s)	570
BsaAI	YACGTR	1 cut(s)	946
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	4 cut(s)	220, 266, 598, 961
BsaJI	CCNNGG	9 cut(s)	105, 106, 409, 889, 900, 1138, 1249, 1329, 2046
BsaWI	WCCGGW	2 cut(s)	574, 2120
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	7 cut(s)	112, 118, 358, 1238, 1714, 1715, 2240
Bse118I	RCCGGY	1 cut(s)	2120
Bse1I	ACTGG	3 cut(s)	197, 825, 1203
Bse3DI	GCAATG	3 cut(s)	517, 2057, 2196
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	574
BseBI	CCWGG	4 cut(s)	113, 993, 2047, 2241
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	9 cut(s)	105, 106, 409, 889, 900, 1138, 1249, 1329, 2046
BseGI	GGATG	7 cut(s)	382, 701, 829, 919, 1675, 1984, 2014
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	7 cut(s)	112, 118, 358, 1238, 1714, 1715, 2240
BseMI	GCAATG	3 cut(s)	517, 2057, 2196
BseMII	CTCAG	5 cut(s)	269, 1058, 1191, 1470, 1851
BseNI	ACTGG	3 cut(s)	197, 825, 1203
BseRI	GAGGAG	1 cut(s)	1887
BseXI	GCAGC	4 cut(s)	163, 2049, 2052, 2198
BseYI	CCCAGC	2 cut(s)	1733, 1885
Bsh1236I	CGCG	3 cut(s)	212, 411, 1125
BshFI	GGCC	4 cut(s)	111, 299, 351, 1143
BshNI	GGYRCC	2 cut(s)	35, 2243
BshTI	ACCGGT	1 cut(s)	2120
BshVI	ATCGAT	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	4 cut(s)	87, 107, 575, 2121
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	7 cut(s)	112, 118, 358, 1238, 1714, 1715, 2240
BsmAI	GTCTC	6 cut(s)	220, 266, 598, 961, 1068, 1899
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	4 cut(s)	111, 299, 351, 1143
Bso31I	GGTCTC	4 cut(s)	220, 266, 598, 961
BsoBI	CYCGRG	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	574
Bsp143I	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
Bsp1720I	GCTNAGC	1 cut(s)	1172
Bsp19I	CCATGG	1 cut(s)	1138
BspACI	CCGC	7 cut(s)	194, 212, 409, 411, 800, 853, 1832
BspANI	GGCC	4 cut(s)	111, 299, 351, 1143
BspCNI	CTCAG	5 cut(s)	268, 1059, 1190, 1469, 1852
BspDI	ATCGAT	1 cut(s)	570
BspEI	TCCGGA	1 cut(s)	574
BspFNI	CGCG	3 cut(s)	212, 411, 1125
BspLI	GGNNCC	4 cut(s)	37, 298, 1327, 2245
BspMAI	CTGCAG	2 cut(s)	1714, 2070
BspPI	GGATC	5 cut(s)	510, 566, 692, 875, 1699
BspT107I	GGYRCC	2 cut(s)	35, 2243
BspTNI	GGTCTC	4 cut(s)	220, 266, 598, 961
BsrDI	GCAATG	3 cut(s)	517, 2057, 2196
BsrFI	RCCGGY	1 cut(s)	2120
BsrI	ACTGG	3 cut(s)	197, 825, 1203
BssAI	RCCGGY	1 cut(s)	2120
BssECI	CCNNGG	9 cut(s)	105, 106, 409, 889, 900, 1138, 1249, 1329, 2046
BssMI	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	4 cut(s)	889, 1138, 1249, 1329
Bst2UI	CCWGG	4 cut(s)	113, 993, 2047, 2241
Bst4CI	ACNGT	7 cut(s)	83, 287, 315, 452, 748, 1189, 1372
Bst6I	CTCTTC	1 cut(s)	924
BstACI	GRCGYC	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	946
BstC8I	GCNNGC	5 cut(s)	413, 524, 652, 777, 1511
BstDEI	CTNAG	8 cut(s)	255, 617, 1067, 1172, 1177, 1456, 1503, 1860
BstDSI	CCRYGG	2 cut(s)	409, 1138
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	7 cut(s)	382, 701, 829, 919, 1675, 1984, 2014
BstFNI	CGCG	3 cut(s)	212, 411, 1125
BstH2I	RGCGCY	3 cut(s)	39, 1172, 1510
BstHHI	GCGC	4 cut(s)	38, 1127, 1171, 1509
BstKTI	GATC	9 cut(s)	436, 505, 574, 700, 870, 1151, 1224, 1707, 2225
BstMAI	GTCTC	6 cut(s)	220, 266, 598, 961, 1068, 1899
BstMBI	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 42, 402, 797, 861, 1055, 1280, 1718, 1963
BstNI	CCWGG	4 cut(s)	113, 993, 2047, 2241
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	7 cut(s)	86, 105, 106, 111, 991, 2045, 2239
BstSFI	CTRYAG	3 cut(s)	1128, 1710, 2066
BstUI	CGCG	3 cut(s)	212, 411, 1125
BstV1I	GCAGC	4 cut(s)	163, 2049, 2052, 2198
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	4 cut(s)	502, 697, 1221, 1704
BstYI	RGATCY	4 cut(s)	502, 697, 1221, 1704
Bsu15I	ATCGAT	1 cut(s)	570
BsuI	GTATCC	2 cut(s)	1537, 1597
BsuRI	GGCC	4 cut(s)	111, 299, 351, 1143
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	2 cut(s)	409, 1138
BtgZI	GCGATG	2 cut(s)	55, 193
BtsCI	GGATG	7 cut(s)	382, 701, 829, 919, 1675, 1984, 2014
BtsIMutI	CAGTG	3 cut(s)	429, 1374, 1849
Cac8I	GCNNGC	5 cut(s)	413, 524, 652, 777, 1511
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	4 cut(s)	38, 1127, 1171, 1509
Cfr10I	RCCGGY	1 cut(s)	2120
Cfr13I	GGNCC	3 cut(s)	109, 297, 558
Cfr42I	CCGCGG	1 cut(s)	412
Cfr9I	CCCGGG	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	570
Csp6I	GTAC	5 cut(s)	13, 316, 803, 818, 1651
CspAI	ACCGGT	1 cut(s)	2120
CviQI	GTAC	5 cut(s)	13, 316, 803, 818, 1651
DdeI	CTNAG	8 cut(s)	255, 617, 1067, 1172, 1177, 1456, 1503, 1860
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	9 cut(s)	435, 504, 573, 699, 869, 1150, 1223, 1706, 2224
DpnII	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
DraIII	CACNNNGTG	1 cut(s)	1397
EaeI	YGGCCR	2 cut(s)	349, 1141
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
EciI	GGCGGA	1 cut(s)	1847
Eco130I	CCWWGG	4 cut(s)	889, 1138, 1249, 1329
Eco31I	GGTCTC	4 cut(s)	220, 266, 598, 961
Eco32I	GATATC	2 cut(s)	568, 2167
Eco47I	GGWCC	1 cut(s)	558
Eco47III	AGCGCT	1 cut(s)	1170
Eco57I	CTGAAG	1 cut(s)	1398
Eco72I	CACGTG	1 cut(s)	946
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	1422, 2036
EcoRII	CCWGG	4 cut(s)	111, 991, 2045, 2239
EcoRV	GATATC	2 cut(s)	568, 2167
EcoT14I	CCWWGG	4 cut(s)	889, 1138, 1249, 1329
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	4 cut(s)	889, 1138, 1249, 1329
FalI	AAGNNNNNCTT	3 cut(s)	31, 2121, 2153
FaqI	GGGAC	1 cut(s)	263
FauI	CCCGC	1 cut(s)	404
FblI	GTMKAC	2 cut(s)	1131, 2017
Fnu4HI	GCNGC	5 cut(s)	177, 194, 2063, 2066, 2187
FokI	GGATG	7 cut(s)	389, 688, 836, 926, 1682, 1991, 2021
Fsp4HI	GCNGC	5 cut(s)	177, 194, 2063, 2066, 2187
FspBI	CTAG	3 cut(s)	1046, 1514, 1787
GlaI	GCGC	4 cut(s)	37, 1126, 1170, 1508
GluI	GCNGC	5 cut(s)	177, 194, 2063, 2066, 2187
GsaI	CCCAGC	2 cut(s)	1737, 1889
GsuI	CTGGAG	3 cut(s)	714, 945, 2082
HaeII	RGCGCY	3 cut(s)	39, 1172, 1510
HaeIII	GGCC	4 cut(s)	111, 299, 351, 1143
HapII	CCGG	4 cut(s)	87, 107, 575, 2121
HhaI	GCGC	4 cut(s)	38, 1127, 1171, 1509
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	4 cut(s)	36, 1125, 1169, 1507
HinP1I	GCGC	4 cut(s)	36, 1125, 1169, 1507
HincII	GTYRAC	1 cut(s)	1200
HindII	GTYRAC	1 cut(s)	1200
HindIII	AAGCTT	1 cut(s)	648
HpaII	CCGG	4 cut(s)	87, 107, 575, 2121
HphI	GGTGA	3 cut(s)	16, 193, 916
Hpy166II	GTNNAC	4 cut(s)	625, 1132, 1200, 2018
Hpy188I	TCNGA	8 cut(s)	258, 961, 989, 1068, 1180, 1459, 1660, 1978
Hpy8I	GTNNAC	4 cut(s)	625, 1132, 1200, 2018
Hpy99I	CGWCG	1 cut(s)	1818
HpyCH4III	ACNGT	7 cut(s)	83, 287, 315, 452, 748, 1189, 1372
HpyCH4IV	ACGT	4 cut(s)	135, 816, 945, 2020
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 42, 402, 797, 861, 1055, 1280, 1718, 1963
HpyF3I	CTNAG	8 cut(s)	255, 617, 1067, 1172, 1177, 1456, 1503, 1860
HpySE526I	ACGT	4 cut(s)	135, 816, 945, 2020
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	4 cut(s)	36, 1125, 1169, 1507
KasI	GGCGCC	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	574
KspI	CCGCGG	1 cut(s)	412
Kzo9I	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
LmnI	GCTCC	2 cut(s)	920, 1718
Lsp1109I	GCAGC	4 cut(s)	163, 2049, 2052, 2198
LweI	GCATC	5 cut(s)	162, 405, 1567, 1944, 1969
MaeI	CTAG	3 cut(s)	1046, 1514, 1787
MaeII	ACGT	4 cut(s)	135, 816, 945, 2020
MaeIII	GTNAC	9 cut(s)	199, 427, 536, 1156, 1241, 1372, 1444, 2053, 2174
MalI	GATC	9 cut(s)	435, 504, 573, 699, 869, 1150, 1223, 1706, 2224
MboI	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
MfeI	CAATTG	3 cut(s)	1773, 2084, 2207
MflI	RGATCY	4 cut(s)	502, 697, 1221, 1704
MlsI	TGGCCA	2 cut(s)	351, 1143
MluNI	TGGCCA	2 cut(s)	351, 1143
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	7 cut(s)	245, 683, 1497, 1664, 1763, 1958, 2188
MmeI	TCCRAC	5 cut(s)	1012, 1256, 1303, 1581, 1620
Mox20I	TGGCCA	2 cut(s)	351, 1143
MroI	TCCGGA	1 cut(s)	574
MscI	TGGCCA	2 cut(s)	351, 1143
MseI	TTAA	7 cut(s)	164, 633, 645, 1470, 1932, 2150, 2302
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	2 cut(s)	351, 1143
MspA1I	CMGCKG	2 cut(s)	411, 2102
MspI	CCGG	4 cut(s)	87, 107, 575, 2121
MspR9I	CCNGG	7 cut(s)	88, 107, 108, 113, 993, 2047, 2241
MunI	CAATTG	3 cut(s)	1773, 2084, 2207
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	4 cut(s)	113, 993, 2047, 2241
MvnI	CGCG	3 cut(s)	212, 411, 1125
MwoI	GCNNNNNNNGC	9 cut(s)	25, 42, 402, 797, 861, 1055, 1280, 1718, 1963
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	3 cut(s)	88, 107, 108
NcoI	CCATGG	1 cut(s)	1138
NdeII	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
NlaIV	GGNNCC	4 cut(s)	37, 298, 1327, 2245
NmeAIII	GCCGAG	1 cut(s)	925
NmuCI	GTSAC	6 cut(s)	199, 427, 536, 1156, 1372, 1444
NspI	RCATGY	1 cut(s)	526
OliI	CACNNNNGTG	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	526
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	9 cut(s)	421, 753, 833, 859, 1228, 1269, 1499, 1805, 2216
PflMI	CCANNNNNTGG	1 cut(s)	1238
PfoI	TCCNGGA	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	2120
PkrI	GCNGC	5 cut(s)	178, 195, 2064, 2067, 2188
PleI	GAGTC	7 cut(s)	245, 683, 1496, 1663, 1763, 1957, 2188
PluTI	GGCGCC	1 cut(s)	39
PmaCI	CACGTG	1 cut(s)	946
PmlI	CACGTG	1 cut(s)	946
PpsI	GAGTC	7 cut(s)	245, 683, 1496, 1663, 1763, 1957, 2188
Ppu21I	YACGTR	1 cut(s)	946
Psp6I	CCWGG	4 cut(s)	111, 991, 2045, 2239
PspCI	CACGTG	1 cut(s)	946
PspFI	CCCAGC	2 cut(s)	1733, 1885
PspGI	CCWGG	4 cut(s)	111, 991, 2045, 2239
PspN4I	GGNNCC	4 cut(s)	37, 298, 1327, 2245
PspPI	GGNCC	3 cut(s)	109, 297, 558
PstI	CTGCAG	2 cut(s)	1714, 2070
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	4 cut(s)	502, 697, 1221, 1704
PvuII	CAGCTG	1 cut(s)	2102
RsaI	GTAC	5 cut(s)	14, 317, 804, 819, 1652
RsaNI	GTAC	5 cut(s)	13, 316, 803, 818, 1651
RseI	CAYNNNNRTG	1 cut(s)	546
SacII	CCGCGG	1 cut(s)	412
SaqAI	TTAA	7 cut(s)	164, 633, 645, 1470, 1932, 2150, 2302
SatI	GCNGC	5 cut(s)	177, 194, 2063, 2066, 2187
Sau3AI	GATC	9 cut(s)	433, 502, 571, 697, 867, 1148, 1221, 1704, 2222
Sau96I	GGNCC	3 cut(s)	109, 297, 558
SchI	GAGTC	7 cut(s)	245, 683, 1497, 1664, 1763, 1958, 2188
ScrFI	CCNGG	7 cut(s)	88, 107, 108, 113, 993, 2047, 2241
SfaNI	GCATC	5 cut(s)	162, 405, 1567, 1944, 1969
SfcI	CTRYAG	3 cut(s)	1128, 1710, 2066
SfoI	GGCGCC	1 cut(s)	37
Sfr303I	CCGCGG	1 cut(s)	412
SgrBI	CCGCGG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	558
SmaI	CCCGGG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	1097, 1694
SmoI	CTYRAG	2 cut(s)	1097, 1694
SphI	GCATGC	1 cut(s)	526
SsiI	CCGC	7 cut(s)	194, 212, 409, 411, 800, 853, 1832
SspDI	GGCGCC	1 cut(s)	35
SspI	AATATT	1 cut(s)	2115
SspMI	CTAG	3 cut(s)	1046, 1514, 1787
StyD4I	CCNGG	7 cut(s)	86, 105, 106, 111, 991, 2045, 2239
StyI	CCWWGG	4 cut(s)	889, 1138, 1249, 1329
TaaI	ACNGT	7 cut(s)	83, 287, 315, 452, 748, 1189, 1372
TaiI	ACGT	4 cut(s)	138, 819, 948, 2023
TaqI	TCGA	2 cut(s)	570, 1952
TaqII	GACCGA	1 cut(s)	1781
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	9 cut(s)	421, 753, 833, 859, 1228, 1269, 1499, 1805, 2216
Tru1I	TTAA	7 cut(s)	164, 633, 645, 1470, 1932, 2150, 2302
Tru9I	TTAA	7 cut(s)	164, 633, 645, 1470, 1932, 2150, 2302
TscAI	CASTG	3 cut(s)	436, 1381, 1849
TseFI	GTSAC	6 cut(s)	199, 427, 536, 1156, 1372, 1444
TseI	GCWGC	4 cut(s)	176, 2062, 2065, 2186
Tsp45I	GTSAC	6 cut(s)	199, 427, 536, 1156, 1372, 1444
TspDTI	ATGAA	6 cut(s)	923, 1446, 1547, 1686, 1932, 2029
TspMI	CCCGGG	1 cut(s)	106
TspRI	CASTG	3 cut(s)	436, 1381, 1849
Van91I	CCANNNNNTGG	1 cut(s)	1238
VpaK11BI	GGWCC	1 cut(s)	558
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	7 cut(s)	243, 264, 485, 552, 769, 1422, 2036
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1588
XmaI	CCCGGG	1 cut(s)	106
XmiI	GTMKAC	2 cut(s)	1131, 2017
XspI	CTAG	3 cut(s)	1046, 1514, 1787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.