Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

80290186 .. 80292174

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG630200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTCAATCTGGAATACAATTAGCCCCCTTTTGGTTTACCATGTGGGGTGTGGGCTGTATATATTTGATTGGGTGTAGAAGAAGAACAAAAGGGTGTGCTGCTGCCACAGACATCATGGTCAAATTGGAGAATTGGCTAATAGCCTGTGGGTATGGAGATGGTAGTATAAGAATTTGGGATTCTGACACTGAAACCTGCGACAACATTTTCAATGGGCATAATGGGGCTGTTACTGCCTTACGGTACAATGAGCGTGGGGATATAGTTGCATCTGGAGGCCAAGACAAGGACATTGTATTATGGGATGTAGAGATGGGCGAGGGCAGATATCGTCTCCGCGGGCACGCCGATCAGGTCACTGATCTTGTTTTCTTGGATTCTAGTAGCAAACTCGTTAGTTCCTCAAAAGATAAATTGTTGAAGGTGTGGGATCTTGGAAACTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

150

Amino Acids

16.63

Weight (kDa)

5.3

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	30 - 105	6.7e-07	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	34 - 107	3.3e-06	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	34 - 107	2.1e-07	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	34 - 147	2.3e-41	WDR3 first beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	35 - 146	4.7e-11	MABP1/WDR62 second WD40 domain
NBCH_WD40	PF20426	37 - 133	5.3e-06	Neurobeachin beta propeller domain
Beta-prop_WDR5	PF25175	38 - 147	1.8e-24	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	39 - 147	8.2e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	42 - 145	7.8e-14	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	42 - 109	5.5e-11	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	44 - 148	1.2e-15	CDC20/Fizzy WD40 domain
Beta-prop_SCAP	PF24017	44 - 145	3e-14	SCAP Beta-propeller
WD40_Gbeta	PF25391	45 - 146	2.6e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	47 - 144	6.6e-10	WDR36/Utp21 first beta-propeller
Beta-prop_EML	PF23409	50 - 142	9e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd	PF25047	66 - 146	1.8e-09	TEP-1 second beta-propeller
WD40	PF00400	66 - 103	2.1e-07	WD domain, G-beta repeat
EIF3I	PF24805	71 - 146	1.8e-10	EIF3I
WD40_WDHD1_1st	PF24817	74 - 147	2.4e-09	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	74 - 146	2.4e-14	THOC3 beta-propeller domain
WD40_Prp19	PF24814	86 - 147	1.2e-10	Prp19 WD40 domain
WD40	PF00400	111 - 145	5.1e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	206
AccII	CGCG	1 cut(s)	342
AciI	CCGC	2 cut(s)	340, 342
AclWI	GGATC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	174
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	33, 289
AgsI	TTSAA	3 cut(s)	214, 424, 448
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	441
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	101, 104
ApoI	RAATTY	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	88, 91
BccI	CCATC	2 cut(s)	155, 310
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	102, 105
BlsI	GCNGC	2 cut(s)	103, 106
BmsI	GCATC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 289
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	33, 289
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	88, 91
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	33, 289
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	352, 364, 433
BspACI	CCGC	2 cut(s)	340, 342
BspANI	GGCC	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	3 cut(s)	352, 364, 433
Bst4CI	ACNGT	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	344, 348
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	3 cut(s)	355, 367, 436
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	352, 364, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	88, 91
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	189, 360
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	344, 348
Cfr42I	CCGCGG	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	2 cut(s)	43, 118
CviJI	RGCY	7 cut(s)	5, 26, 57, 139, 146, 230, 282
CviKI_1	RGCY	7 cut(s)	5, 26, 57, 139, 146, 230, 282
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	3 cut(s)	354, 366, 435
DpnII	GATC	3 cut(s)	352, 364, 433
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	332
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	2 cut(s)	46, 121
FaiI	YATR	9 cut(s)	44, 62, 64, 119, 156, 170, 222, 266, 304
FatI	CATG	2 cut(s)	42, 117
FauI	CCCGC	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	102, 105
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	102, 105
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	102, 105
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	46, 121
HinfI	GANTC	2 cut(s)	182, 380
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	12, 276
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	46, 121
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	352, 364, 433
LpnPI	CCDG	4 cut(s)	160, 211, 261, 341
Lsp1109I	GCAGC	2 cut(s)	88, 91
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	232, 358
MalI	GATC	3 cut(s)	354, 366, 435
MboI	GATC	3 cut(s)	352, 364, 433
MboII	GAAGA	2 cut(s)	93, 96
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	6 cut(s)	20, 125, 133, 174, 416, 448
MnlI	CCTC	3 cut(s)	272, 316, 415
MseI	TTAA	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	3 cut(s)	352, 364, 433
NlaIII	CATG	2 cut(s)	46, 121
NmuCI	GTSAC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	182, 380
PkrI	GCNGC	2 cut(s)	103, 106
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	2 cut(s)	102, 105
Sau3AI	GATC	3 cut(s)	352, 364, 433
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	3 cut(s)	200, 360, 429
SfaNI	GCATC	1 cut(s)	281
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
Sse9I	AATT	6 cut(s)	20, 125, 133, 174, 416, 448
SsiI	CCGC	2 cut(s)	340, 342
SspMI	CTAG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	246
TasI	AATT	6 cut(s)	20, 125, 133, 174, 416, 448
TfiI	GAWTC	2 cut(s)	182, 380
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TscAI	CASTG	2 cut(s)	196, 367
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	101, 104
Tsp45I	GTSAC	1 cut(s)	358
TspRI	CASTG	2 cut(s)	196, 367
XapI	RAATTY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 115
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.