Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

57411953 .. 57412346

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGGGAGCTGCATGTGGCTTTTGCTGGGGGAAGAAAACTAAAGAAACAATTTCTTTGACCTACTCAATCGTTACTAAATTAGAAATAGCATGGGAAGAATCAAAGCGACACACCAAATACGAGGCGGAAAAAGTAGACAAAGCTAGCGATTTGGAGTCGATGTTATTGGGGTTACCCTTCTCAGATGACTTGAAGATCTTGTCTCTCTGCAAGGATGTTGGTCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACACTCAATGTTTTAAAAAGGCTGAGGCGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

99

Amino Acids

11.28

Weight (kDa)

7.68

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	138, 226
AciI	CCGC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	196, 245
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	3 cut(s)	11, 146, 297
AluI	AGCT	3 cut(s)	11, 146, 297
Alw26I	GTCTC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	147, 298
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	256
BmtI	GCTAGC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	198, 278
BseYI	CCCAGC	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	197, 279
BspOI	GCTAGC	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	184, 287
BstEII	GGTNACC	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	148
CviAII	CATG	2 cut(s)	15, 93
CviJI	RGCY	5 cut(s)	11, 21, 146, 286, 297
CviKI_1	RGCY	5 cut(s)	11, 21, 146, 286, 297
DdeI	CTNAG	2 cut(s)	184, 287
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DraI	TTTAAA	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	174
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	254
FaeI	CATG	2 cut(s)	18, 96
FaiI	YATR	2 cut(s)	16, 94
FatI	CATG	2 cut(s)	14, 92
FblI	GTMKAC	2 cut(s)	138, 226
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	147, 298
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	18, 96
HinfI	GANTC	2 cut(s)	101, 158
Hpy166II	GTNNAC	2 cut(s)	139, 227
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	139, 227
HpyAV	CCTTC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	14, 213
HpyF3I	CTNAG	2 cut(s)	184, 287
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	18, 96
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	4 cut(s)	13, 241, 246, 268
MaeI	CTAG	2 cut(s)	147, 298
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	3 cut(s)	73, 174, 262
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	3 cut(s)	46, 110, 208
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	3 cut(s)	51, 80, 245
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	3 cut(s)	118, 232, 282
MseI	TTAA	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
NdeII	GATC	1 cut(s)	198
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	18, 96
NspI	RCATGY	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	198
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	6 cut(s)	13, 65, 148, 232, 243, 299
Sse9I	AATT	3 cut(s)	51, 80, 245
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	147, 298
StyD4I	CCNGG	1 cut(s)	254
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	51, 80, 245
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	238
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	18
XmiI	GTMKAC	2 cut(s)	138, 226
XspI	CTAG	2 cut(s)	147, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.