Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023809.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1081

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 893 bp

atggtgaagtcgtacttgcgatacgagcagggtgccgccttcggcgtgatagtttctggcaattcaaacatcgcctacgacagttccgggaagcacatttttgccccgggcctggaaaaggtgggcgtgtggaacgtgcgacaaggcatttgcatcaaaaccttaactccttgtgctgatggatattcgccgccagtcacctccatcgcagtctcgccttcttcttcttcttcttctctgatagccgctgggtatggagatgggagcattagaatttgggactctcagaataaaatttgtgagaccacattctacggtcatacgggggccgttagtgtcttacggtacaacaagattggagataggctggtttctggtggccaagataaggacattatattgtgggatgtggagaggggcgagggcatctatcgccttcgcgggcatgggaatcaggtcactgatctcgtcttcttggactgttgtaagaaactcgttagttcctcaaaagacaaatttttgaaggtctgggatctcgaaaccccccattgcatgcagacaataagtgaccaccatagtgaaatttggtccatagatatcgatcccgaagaaagatatttggtctctggctctgctgacttggaacttagggtttacacaattaagcatgaccttaaagcttgccaatccgcttctaatggaacagaaattgcagactctggagatccatcccttcataataaatggcaagttttgaagctgtttggtgaatatcagcgaaaaagcaagaacagagttgcaactgtgagattcaacaagtctggaaatttgctggcatgtcaagaggcaggaaaggcggtacatatattcaacgtactggatgaggctgaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

298

Amino Acids

32.8

Weight (kDa)

6.5

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	1 cut(s)	441
AciI	CCGC	6 cut(s)	36, 191, 246, 441, 690, 857
AclWI	GGATC	3 cut(s)	540, 596, 719
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	5 cut(s)	273, 294, 515, 582, 826
AfaI	GTAC	4 cut(s)	14, 347, 861, 876
AfiI	CCNNNNNNNGG	3 cut(s)	112, 118, 388
AgsI	TTSAA	5 cut(s)	66, 523, 757, 814, 871
AjnI	CCWGG	1 cut(s)	111
AleI	CACNNNNGTG	1 cut(s)	576
AluBI	AGCT	2 cut(s)	680, 760
AluI	AGCT	2 cut(s)	680, 760
Alw26I	GTCTC	3 cut(s)	217, 296, 628
AlwI	GGATC	3 cut(s)	540, 596, 719
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	3 cut(s)	109, 327, 379
ApoI	RAATTY	5 cut(s)	273, 294, 515, 582, 826
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspS9I	GGNCC	3 cut(s)	109, 327, 588
AsuC2I	CCSGG	3 cut(s)	88, 107, 108
AsuHPI	GGTGA	3 cut(s)	16, 190, 779
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	463
BccI	CCATC	4 cut(s)	173, 212, 254, 736
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	113
BcnI	CCSGG	3 cut(s)	88, 107, 108
BcoDI	GTCTC	3 cut(s)	217, 296, 628
BisI	GCNGC	3 cut(s)	36, 191, 246
BlsI	GCNGC	3 cut(s)	37, 192, 247
Bme1390I	CCNGG	4 cut(s)	88, 107, 108, 113
Bme18I	GGWCC	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	109, 327, 588
BmiI	GGNNCC	2 cut(s)	34, 328
BmrFI	CCNGG	4 cut(s)	88, 107, 108, 113
BmsI	GCATC	2 cut(s)	162, 435
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	741
BpuMI	CCSGG	3 cut(s)	88, 107, 108
Bsa29I	ATCGAT	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	600
BsaI	GGTCTC	2 cut(s)	296, 628
BsaJI	CCNNGG	2 cut(s)	105, 106
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 118, 388
Bse1I	ACTGG	2 cut(s)	194, 882
Bse3DI	GCAATG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	113
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	105, 106
BseGI	GGATG	3 cut(s)	412, 728, 886
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	3 cut(s)	112, 118, 388
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	194, 882
BseYI	CCCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	111, 329, 381
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	87, 107
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	112, 118, 388
BsmAI	GTCTC	3 cut(s)	217, 296, 628
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	111, 329, 381
Bso31I	GGTCTC	2 cut(s)	296, 628
BsoBI	CYCGRG	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	463, 532, 601, 724
BspACI	CCGC	6 cut(s)	36, 191, 246, 441, 690, 857
BspANI	GGCC	3 cut(s)	111, 329, 381
BspCNI	CTCAG	1 cut(s)	298
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	34, 328
BspPI	GGATC	3 cut(s)	540, 596, 719
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	2 cut(s)	296, 628
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	194, 882
BssECI	CCNNGG	2 cut(s)	105, 106
BssMI	GATC	4 cut(s)	463, 532, 601, 724
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	5 cut(s)	83, 317, 345, 482, 805
BstC8I	GCNNGC	4 cut(s)	443, 554, 682, 834
BstDEI	CTNAG	2 cut(s)	285, 647
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	3 cut(s)	412, 728, 886
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	4 cut(s)	466, 535, 604, 727
BstMAI	GTCTC	3 cut(s)	217, 296, 628
BstMBI	GATC	4 cut(s)	463, 532, 601, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 432, 854
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	2 cut(s)	556, 840
BstSCI	CCNGG	4 cut(s)	86, 105, 106, 111
BstUI	CGCG	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	2 cut(s)	532, 724
BstYI	RGATCY	2 cut(s)	532, 724
Bsu15I	ATCGAT	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	111, 329, 381
BsuTUI	ATCGAT	1 cut(s)	600
BtgZI	GCGATG	2 cut(s)	55, 190
BtsCI	GGATG	3 cut(s)	412, 728, 886
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	4 cut(s)	443, 554, 682, 834
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr13I	GGNCC	3 cut(s)	109, 327, 588
Cfr9I	CCCGGG	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	600
Csp6I	GTAC	4 cut(s)	13, 346, 860, 875
CviAII	CATG	4 cut(s)	446, 553, 668, 837
CviJI	RGCY	9 cut(s)	111, 245, 329, 367, 381, 630, 680, 760, 887
CviKI_1	RGCY	9 cut(s)	111, 245, 329, 367, 381, 630, 680, 760, 887
CviQI	GTAC	4 cut(s)	13, 346, 860, 875
DdeI	CTNAG	2 cut(s)	285, 647
DpnI	GATC	4 cut(s)	465, 534, 603, 726
DpnII	GATC	4 cut(s)	463, 532, 601, 724
EaeI	YGGCCR	1 cut(s)	379
Eco31I	GGTCTC	2 cut(s)	296, 628
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	598
FaeI	CATG	4 cut(s)	449, 556, 671, 840
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	445, 552, 667, 836
FauI	CCCGC	1 cut(s)	434
Fnu4HI	GCNGC	3 cut(s)	36, 191, 246
FokI	GGATG	2 cut(s)	419, 715
Fsp4HI	GCNGC	3 cut(s)	36, 191, 246
GluI	GCNGC	3 cut(s)	36, 191, 246
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	3 cut(s)	111, 329, 381
HapII	CCGG	2 cut(s)	87, 107
Hin1II	CATG	4 cut(s)	449, 556, 671, 840
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	5 cut(s)	281, 451, 716, 810, 890
HpaII	CCGG	2 cut(s)	87, 107
HphI	GGTGA	3 cut(s)	16, 190, 779
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	2 cut(s)	240, 288
Hpy188III	TCNNGA	5 cut(s)	536, 605, 720, 822, 842
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	5 cut(s)	49, 228, 446, 517, 743
HpyCH4III	ACNGT	5 cut(s)	83, 317, 345, 482, 805
HpyCH4IV	ACGT	2 cut(s)	135, 873
HpyCH4V	TGCA	5 cut(s)	153, 552, 556, 713, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 432, 854
HpyF3I	CTNAG	2 cut(s)	285, 647
HpySE526I	ACGT	2 cut(s)	135, 873
Hsp92II	CATG	4 cut(s)	449, 556, 671, 840
Kzo9I	GATC	4 cut(s)	463, 532, 601, 724
LmnI	GCTCC	1 cut(s)	264
LweI	GCATC	2 cut(s)	162, 435
MaeII	ACGT	2 cut(s)	135, 873
MaeIII	GTNAC	3 cut(s)	196, 457, 566
MalI	GATC	4 cut(s)	465, 534, 603, 726
MboI	GATC	4 cut(s)	463, 532, 601, 724
MboII	GAAGA	7 cut(s)	213, 216, 219, 222, 225, 463, 620
MflI	RGATCY	2 cut(s)	532, 724
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	8 cut(s)	61, 273, 294, 515, 582, 660, 708, 826
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	275, 710
MnlI	CCTC	6 cut(s)	211, 408, 415, 514, 838, 877
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	3 cut(s)	164, 663, 675
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	87, 107
MspR9I	CCNGG	4 cut(s)	88, 107, 108, 113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	3 cut(s)	25, 432, 854
NciI	CCSGG	3 cut(s)	88, 107, 108
NdeII	GATC	4 cut(s)	463, 532, 601, 724
NlaIII	CATG	4 cut(s)	449, 556, 671, 840
NlaIV	GGNNCC	2 cut(s)	34, 328
NmuCI	GTSAC	3 cut(s)	196, 457, 566
NspI	RCATGY	2 cut(s)	556, 840
OliI	CACNNNNGTG	1 cut(s)	576
PaeI	GCATGC	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	451, 810, 890
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	37, 192, 247
PleI	GAGTC	2 cut(s)	275, 710
PpsI	GAGTC	2 cut(s)	275, 710
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	34, 328
PspPI	GGNCC	3 cut(s)	109, 327, 588
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	2 cut(s)	532, 724
RsaI	GTAC	4 cut(s)	14, 347, 861, 876
RsaNI	GTAC	4 cut(s)	13, 346, 860, 875
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	164, 663, 675
SatI	GCNGC	3 cut(s)	36, 191, 246
Sau3AI	GATC	4 cut(s)	463, 532, 601, 724
Sau96I	GGNCC	3 cut(s)	109, 327, 588
SchI	GAGTC	2 cut(s)	275, 710
ScrFI	CCNGG	4 cut(s)	88, 107, 108, 113
SfaNI	GCATC	2 cut(s)	162, 435
SinI	GGWCC	1 cut(s)	588
SmaI	CCCGGG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	576
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	8 cut(s)	61, 273, 294, 515, 582, 660, 708, 826
SsiI	CCGC	6 cut(s)	36, 191, 246, 441, 690, 857
StyD4I	CCNGG	4 cut(s)	86, 105, 106, 111
TaaI	ACNGT	5 cut(s)	83, 317, 345, 482, 805
TaiI	ACGT	2 cut(s)	138, 876
TaqI	TCGA	2 cut(s)	537, 600
TasI	AATT	8 cut(s)	61, 273, 294, 515, 582, 660, 708, 826
TauI	GCSGC	3 cut(s)	38, 193, 248
TfiI	GAWTC	3 cut(s)	451, 810, 890
Tru1I	TTAA	3 cut(s)	164, 663, 675
Tru9I	TTAA	3 cut(s)	164, 663, 675
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	3 cut(s)	196, 457, 566
Tsp45I	GTSAC	3 cut(s)	196, 457, 566
TspDTI	ATGAA	1 cut(s)	725
TspMI	CCCGGG	1 cut(s)	106
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	5 cut(s)	273, 294, 515, 582, 826
XceI	RCATGY	2 cut(s)	556, 840
XmaI	CCCGGG	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.