Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

32837137 .. 32844591

Gene Structure 7455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGGTGAAGTCGTACCTCCGTTACGAGCAGGCGGCGGTCTTCGGGGTCATCTCCTCCGGCGATTCAAACATCACCTACGACAGCTCCGGCAAGCACCTTCTTGCTCCCGCCCTCGAAAAGGTCGGCGTTTGGCACGTACGACAGGGCGTTTGTACCAAAACCCTCACCCCTTCTTCCGCCACCACCGGAAAACCCATCTCTGTCACCTCCATCGTTTCCTCTCATACTTCTCTGGTAAAGACTTCAACTTTTCTCTCCTCTTTTTTAGAGTTTTGCAATTCTGTGAAAAAAGGAAAATGGTTGAGTCGAGCAGAGGGTTTGGTTTTAGCTCAGTGTGGTTTGATTGATGAGAATTTTGTACCTGAATGTAGATTAAATGATGGTAACGGGGAAATGAGGAGTTTGATAGCTGCTGGGTATTCAGATGGTAGTATAAGAATTTGGGATTCTGAGAAAGGGACCTGTGAGACGACACTCAATGGACATAAAAAGGCTGTCACTGCCTTACGGTATGACAAGCTTGGATCTAAGCTTGCTTCTGGAAGCAAAGATGATGACATTATATTATGGGATGTGGTCGGTGAGAGCGGCCTATATCGCCTCCGTGGGCATCATGATCAGGTTACGGATCTTGTCTTCTTGGATTCTGGAAAGAAACTCGTTAGTTCCTCAAAAGATAAATTTCTGAAAGTATGGGATCTTGATACCCAGCATTGCATGCAGACAATTAGTGGCCACCATAGTGAAATCTGGTCTATAGATAGTGATCCAGAAGAAAGATATTTAGTCTCTGGGTCTGCAGATGCGGAGCTTAGATTTTACACAATTAAGCATGACTCGGAAGATGGCCAATCCATCTCTAATGGGAATGTAACTGTAACTGCGGGGAGTGGAGATCCACCGGTTCATACTAAATGGGAAGTTTTGAAGATGTTTGGTGAGTTACCACGGAAAAACAACGAGGGTAGAGTCGCAACTGTGAGATTCAACAAGTCTGGAAATTTGCTGGCTTGTCAGGTGGCGGGAAAGACAGTAGATATATTCCATGTACTGGATGAGGATGAATCAAAGCGGAAAGCAAAACGCAGGCTTCACCGGAAGAAAGAAAAAAAAATCTGCCAAGGGGGCACCTCAGCGAGCAAAAAGATATGTTCAATCTCGTTCTGTCCAAACACTACAAAGAGTTCGATGGCTACACTAGCTTTGTCATTGAACAATAATTTGTTGGAATTTTATTCTATCGAAAGCAATGCAACGAACAAAACACTTTCTGTAGAGCTTCAAGGACACCGATCTGATGTCAGAAGTGTAGCACTTAGCTCAGATAACACACTCTTGATGTCAACTAGTCACAATGCAGTAAAGATTTGGAATCCAAGTACTGGTTCCTGCCTGCGAACAATTGATTCCGGATATGGCATGTGTGGTTTTATCATTCCTAACAGCGAGTATGCACTTGTTGGAACTAAAAGTGGAACAATGGAAATTATTAACATTGGAAGTGGCACTTGCATTGAAGCAGTGGAAGCACACAGTGGCTCTGTCATGTCAATTGCTGCCATTCCTAATGAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTTAAGTTTTGGGAATATGAAGTAAAACAGAAGTCTGCTCAAGATTCCAAGCAGCTAGTGGTGTCAAATGTAAGGACTATGAAGATGAACGACGATGCCCTTGTGGTTGCTGTCAGCCCTGATGCCAAATATATCTTGGTTGCACTATTGGATTGCACAGTGAAGGTGTTCTTTATGGATTCACTTAAGCTTTTCCTTTCCTTGTATGGTCATAAGTTGCCTGTATTATGTATGGATACATCATCTGACGGAGACCTAATAGTGACTGGATCTGCTGATAAAAATTTGAAGATTTGGGGTTTAGATTTTGGTGATTGTCATAAATCCTTATTCGCTCATGAGGACAGTGTAACAGCTGTTCGATTTGTGCAAAACACACATTACATGTTTAGTGCTGGAAAGGACCGCATTGTAAAATATTGGGATGCTGATAAATTTCAGTTGCTTTTAACGCTTGAGGGACACCATGCTGAAGTTTGGTGCCTCGGAATTAGTAACCGTGGGGACTTCATTGTCACGGGATCTCATGACAGATCAATACGTCGCTGGGATCGCACTGAAGAGCCATTTTTTATTGAGGAAGAAGAAGAAAAAAGGCAGTTGGAAATGATTGAGTCTGAACTTGACAATATGATAGAGAGCAGGTATCAAAAGGAAGAAATCCCTGAGGTGGGAGCTGTGGCCTTAGCAGGGAAGAAATCTAAAGAAACAATTACAGCTGCCGATGCAATTATCGATGCAATAGATATGGCAGATGCAGAAATGAAGCGACTTGCGGAACATGAGGAGGAGAAAAGCAGGGGAAGTGTTGCTGACTTTAAACCAAATAGTCTCATGAATGGGCTCTCTCCATCTGAATATGTTCTTCGCGCATTTTCAAATGTTCAGACAAATGATCTTGAGCAGACGCTACTGGCTTTACCGTTCTCAGATGCTTTGAAGCTTATGTCTTACTTGAAGGACTGGACTTTGAATCCTGATAAGGTTGAACTCGTTTGCAAGATTTCTTTGGTTCTATTACAGACACATTTTAATCAGTTGGTTAGTACACCGGCAGCAAGACCAATGTTAACTGCTTTGAAAGAGATTCTTTATCCCGAAGTTAAGGAACGGAAAGACATCATTGGTTTCAACCTTGCAGGGTTGGAACATCTTAAGCAACTAATGGCTTCGAGATCAGATGCATTATTTCAAGATGCAAAATCAAAGTTGCAGCTAGAGAGAGAGTATATGACAAATGATGGACACGCTTGCGTACTAGTGGGCTGGAGAAATGAGAATTCCAGCGGTGAAGCCAACTATGGTGAGGGCCTCAAAGATGGATGCCTACTGTGGCTGTTAGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

984

Amino Acids

108.83

Weight (kDa)

5.87

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	133 - 279	1.3e-20	CDC20/Fizzy WD40 domain
Beta-prop_IFT140_1st	PF23383	133 - 192	6.4e-06	IFT140 first beta-propeller
Beta-prop_WDR3_1st	PF25173	133 - 276	1.5e-65	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	133 - 193	4.6e-08	WDHD1 first WD40 domain
WDR55	PF24796	133 - 285	7.9e-16	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	134 - 238	2.3e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	134 - 279	8.1e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	134 - 233	9.6e-14	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	134 - 275	5.8e-26	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	135 - 277	3.5e-30	WDR5 beta-propeller domain
WD40_Prp19	PF24814	135 - 191	5.9e-09	Prp19 WD40 domain
Beta-prop_Aladin	PF25460	136 - 292	6.1e-07	Aladin seven-bladed propeller
Beta-prop_SCAP	PF24017	137 - 237	3.3e-12	SCAP Beta-propeller
Beta-prop_EML_2	PF23414	137 - 278	2.4e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	138 - 274	1.1e-12	WDR36/Utp21 first beta-propeller
WD40	PF00400	153 - 191	7.3e-07	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	154 - 275	3.2e-13	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	175 - 282	1.4e-06	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	176 - 280	3.2e-18	Prp19 WD40 domain
WD40_Gbeta	PF25391	184 - 281	1.5e-09	G protein beta WD-40 repeat protein
WD40	PF00400	198 - 233	1.7e-06	WD domain, G-beta repeat
EIF3I	PF24805	201 - 278	1.4e-10	EIF3I
WD40_WDHD1_1st	PF24817	206 - 281	2.6e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	229 - 285	1.7e-07	WDR3 second beta-propeller domain
WD40	PF00400	238 - 274	1e-05	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	322 - 543	1.1e-16	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	366 - 539	2.4e-13	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	378 - 540	7.6e-15	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	380 - 590	1.9e-17	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	400 - 643	1.2e-24	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	403 - 634	6.1e-14	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	413 - 676	1.2e-12	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	433 - 724	1.1e-135	WDR3 second beta-propeller domain
PEP5_VPS11_N	PF23341	480 - 743	2.3e-07	PEP5/VPS11 N-terminal
WD40_WDHD1_1st	PF24817	481 - 644	1.1e-12	WDHD1 first WD40 domain
WD40_Prp19	PF24814	482 - 678	5.3e-23	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	483 - 667	1.6e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	517 - 682	2.3e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	525 - 721	1.6e-15	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	558 - 719	4.7e-23	THOC3 beta-propeller domain
WDR55	PF24796	562 - 736	8.8e-11	WDR55
Beta-prop_WDR3_1st	PF25173	564 - 719	1.6e-31	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	566 - 718	7.8e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	570 - 721	7.5e-29	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	580 - 718	3.5e-06	WDR36/Utp21 first beta-propeller
WD40	PF00400	601 - 634	1.1e-07	WD domain, G-beta repeat
Beta-prop_EML	PF23409	609 - 680	5.5e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	619 - 719	2.3e-07	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	639 - 677	8.3e-06	WD domain, G-beta repeat
EIF3I	PF24805	645 - 722	2.8e-10	EIF3I
WD40_Prp19	PF24814	663 - 825	3.6e-09	Prp19 WD40 domain
WD40	PF00400	682 - 719	3e-08	WD domain, G-beta repeat
Utp12	PF04003	820 - 922	4.8e-23	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2117
Acc36I	ACCTGC	1 cut(s)	2238
AccB1I	GGYRCC	2 cut(s)	1127, 2085
AccB7I	CCANNNNNTGG	2 cut(s)	1051, 1382
AccBSI	CCGCTC	1 cut(s)	588
AccII	CGCG	1 cut(s)	2475
AccIII	TCCGGA	1 cut(s)	1409
AclWI	GGATC	8 cut(s)	532, 636, 705, 761, 890, 1882, 2134, 2163
AcoI	YGGCCR	2 cut(s)	733, 847
AcsI	RAATTY	8 cut(s)	352, 438, 680, 1000, 1229, 1888, 2039, 2884
AcuI	CTGAAG	2 cut(s)	2097, 2184
AdeI	CACNNNGTG	1 cut(s)	1535
AfaI	GTAC	8 cut(s)	14, 138, 154, 360, 1050, 1381, 2653, 2862
AfiI	CCNNNNNNNGG	6 cut(s)	118, 1051, 1382, 2275, 2276, 2295
AflII	CTTAAG	2 cut(s)	1790, 2759
AflIII	ACRYGT	1 cut(s)	1989
AgeI	ACCGGT	1 cut(s)	901
AhlI	ACTAGT	2 cut(s)	1346, 2863
AjuI	GAANNNNNNNTTGG	2 cut(s)	1369, 1401
AleI	CACNNNNGTG	1 cut(s)	741
Alw26I	GTCTC	4 cut(s)	461, 793, 1851, 2441
AlwI	GGATC	8 cut(s)	532, 636, 705, 761, 890, 1882, 2134, 2163
Aor13HI	TCCGGA	1 cut(s)	1409
AoxI	GGCC	5 cut(s)	589, 733, 847, 2286, 2914
ApeKI	GCWGC	6 cut(s)	410, 1556, 1657, 2324, 2660, 2818
ApoI	RAATTY	8 cut(s)	352, 438, 680, 1000, 1229, 1888, 2039, 2884
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	1 cut(s)	901
Asp700I	GAANNNNTTC	2 cut(s)	1772, 2466
AspLEI	GCGC	1 cut(s)	2477
AspS9I	GGNCC	3 cut(s)	459, 2008, 2914
AvaII	GGWCC	2 cut(s)	459, 2008
AxyI	CCTNAGG	1 cut(s)	2271
BaeGI	GKGCMC	1 cut(s)	1130
BalI	TGGCCA	2 cut(s)	735, 849
BanI	GGYRCC	2 cut(s)	1127, 2085
BanII	GRGCYC	1 cut(s)	2451
BbsI	GAAGAC	2 cut(s)	31, 628
BbvCI	CCTCAGC	1 cut(s)	1132
BbvI	GCAGC	6 cut(s)	397, 1543, 1669, 2311, 2672, 2830
BcgI	CGANNNNNNTGC	2 cut(s)	1232, 1266
BciVI	GTATCC	1 cut(s)	1834
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	4 cut(s)	461, 793, 1851, 2441
BcuI	ACTAGT	2 cut(s)	1346, 2863
BfaI	CTAG	5 cut(s)	1199, 1347, 1661, 2822, 2864
BfmI	CTRYAG	3 cut(s)	756, 798, 1272
BfrI	CTTAAG	2 cut(s)	1790, 2759
BfuAI	ACCTGC	1 cut(s)	2238
BfuI	GTATCC	1 cut(s)	1834
BglI	GCCNNNNNGGC	1 cut(s)	1125
BisI	GCNGC	8 cut(s)	33, 411, 589, 1557, 1658, 2325, 2661, 2819
BlsI	GCNGC	8 cut(s)	34, 412, 590, 1558, 1659, 2326, 2662, 2820
BmcAI	AGTACT	1 cut(s)	1381
Bme18I	GGWCC	2 cut(s)	459, 2008
BmgT120I	GGNCC	3 cut(s)	459, 2008, 2914
BmiI	GGNNCC	4 cut(s)	460, 1129, 1387, 2087
BpiI	GAAGAC	2 cut(s)	31, 628
BpmI	CTGGAG	1 cut(s)	2893
Bpu10I	CCTNAGC	2 cut(s)	1132, 2290
BpuEI	CTTGAG	3 cut(s)	1629, 2081, 2525
Bsa29I	ATCGAT	1 cut(s)	2340
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	1851
BsaJI	CCNNGG	5 cut(s)	604, 947, 1120, 2089, 2104
BsaWI	WCCGGW	4 cut(s)	185, 901, 1095, 1409
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	6 cut(s)	118, 1051, 1382, 2275, 2276, 2295
Bse118I	RCCGGY	2 cut(s)	901, 2656
Bse1I	ACTGG	5 cut(s)	1056, 1387, 1876, 2523, 2573
Bse21I	CCTNAGG	1 cut(s)	2271
Bse3DI	GCAATG	2 cut(s)	712, 1255
Bse8I	GATNNNNATC	1 cut(s)	765
BseAI	TCCGGA	1 cut(s)	1409
BseCI	ATCGAT	1 cut(s)	2340
BseDI	CCNNGG	5 cut(s)	604, 947, 1120, 2089, 2104
BseGI	GGATG	5 cut(s)	577, 1060, 1066, 2035, 2933
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	6 cut(s)	118, 1051, 1382, 2275, 2276, 2295
BseMI	GCAATG	2 cut(s)	712, 1255
BseMII	CTCAG	6 cut(s)	344, 441, 1146, 1335, 2262, 2547
BseNI	ACTGG	5 cut(s)	1056, 1387, 1876, 2523, 2573
BseRI	GAGGAG	5 cut(s)	43, 247, 412, 2405, 2408
BseSI	GKGCMC	1 cut(s)	1130
BseXI	GCAGC	6 cut(s)	397, 1543, 1669, 2311, 2672, 2830
BseYI	CCCAGC	3 cut(s)	413, 708, 2151
BsgI	GTGCAG	1 cut(s)	1614
Bsh1236I	CGCG	1 cut(s)	2475
BshFI	GGCC	5 cut(s)	591, 735, 849, 2288, 2916
BshNI	GGYRCC	2 cut(s)	1127, 2085
BshTI	ACCGGT	1 cut(s)	901
BshVI	ATCGAT	1 cut(s)	2340
BsiSI	CCGG	7 cut(s)	57, 87, 186, 902, 1096, 1410, 2657
BsiWI	CGTACG	1 cut(s)	136
BslFI	GGGAC	3 cut(s)	472, 2079, 2123
BslI	CCNNNNNNNGG	6 cut(s)	118, 1051, 1382, 2275, 2276, 2295
BsmAI	GTCTC	4 cut(s)	461, 793, 1851, 2441
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	3 cut(s)	472, 2079, 2123
BsnI	GGCC	5 cut(s)	591, 735, 849, 2288, 2916
Bso31I	GGTCTC	1 cut(s)	1851
Bsp1286I	GDGCHC	2 cut(s)	1130, 2451
Bsp13I	TCCGGA	1 cut(s)	1409
BspANI	GGCC	5 cut(s)	591, 735, 849, 2288, 2916
BspCNI	CTCAG	6 cut(s)	343, 442, 1145, 1334, 2263, 2546
BspDI	ATCGAT	1 cut(s)	2340
BspEI	TCCGGA	1 cut(s)	1409
BspFNI	CGCG	1 cut(s)	2475
BspHI	TCATGA	5 cut(s)	613, 1600, 1942, 2131, 2439
BspLI	GGNNCC	4 cut(s)	460, 1129, 1387, 2087
BspMAI	CTGCAG	1 cut(s)	802
BspMI	ACCTGC	1 cut(s)	2238
BspPI	GGATC	8 cut(s)	532, 636, 705, 761, 890, 1882, 2134, 2163
BspQI	GCTCTTC	1 cut(s)	2160
BspT107I	GGYRCC	2 cut(s)	1127, 2085
BspTI	CTTAAG	2 cut(s)	1790, 2759
BspTNI	GGTCTC	1 cut(s)	1851
BsrBI	CCGCTC	1 cut(s)	588
BsrDI	GCAATG	2 cut(s)	712, 1255
BsrFI	RCCGGY	2 cut(s)	901, 2656
BsrI	ACTGG	5 cut(s)	1056, 1387, 1876, 2523, 2573
BssAI	RCCGGY	2 cut(s)	901, 2656
BssECI	CCNNGG	5 cut(s)	604, 947, 1120, 2089, 2104
BssT1I	CCWWGG	1 cut(s)	1120
Bst6I	CTCTTC	1 cut(s)	2160
BstAFI	CTTAAG	2 cut(s)	1790, 2759
BstAPI	GCANNNNNTGC	1 cut(s)	718
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	9 cut(s)	30, 92, 534, 719, 1008, 1088, 1138, 1394, 2857
BstDSI	CCRYGG	3 cut(s)	604, 947, 2104
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	5 cut(s)	577, 1060, 1066, 2035, 2933
BstFNI	CGCG	1 cut(s)	2475
BstHHI	GCGC	1 cut(s)	2477
BstMAI	GTCTC	4 cut(s)	461, 793, 1851, 2441
BstMWI	GCNNNNNNNGC	9 cut(s)	500, 597, 718, 1125, 1199, 1526, 2056, 2157, 2330
BstNSI	RCATGY	3 cut(s)	721, 1423, 1993
BstSFI	CTRYAG	3 cut(s)	756, 798, 1272
BstSLI	GKGCMC	1 cut(s)	1130
BstUI	CGCG	1 cut(s)	2475
BstV1I	GCAGC	6 cut(s)	397, 1543, 1669, 2311, 2672, 2830
BstV2I	GAAGAC	2 cut(s)	31, 628
BstX2I	RGATCY	6 cut(s)	524, 628, 697, 895, 1874, 2126
BstYI	RGATCY	6 cut(s)	524, 628, 697, 895, 1874, 2126
Bsu15I	ATCGAT	1 cut(s)	2340
Bsu36I	CCTNAGG	1 cut(s)	2271
BsuI	GTATCC	1 cut(s)	1834
BsuRI	GGCC	5 cut(s)	591, 735, 849, 2288, 2916
BsuTUI	ATCGAT	1 cut(s)	2340
BtgI	CCRYGG	3 cut(s)	604, 947, 2104
BtsCI	GGATG	5 cut(s)	577, 1060, 1066, 2035, 2933
BtsI	GCAGTG	2 cut(s)	498, 1527
BtsIMutI	CAGTG	7 cut(s)	338, 498, 1527, 1540, 1770, 1957, 2160
BveI	ACCTGC	1 cut(s)	2238
Cac8I	GCNNGC	9 cut(s)	30, 92, 534, 719, 1008, 1088, 1138, 1394, 2857
CciI	TCATGA	5 cut(s)	613, 1600, 1942, 2131, 2439
CfoI	GCGC	1 cut(s)	2477
Cfr10I	RCCGGY	2 cut(s)	901, 2656
Cfr13I	GGNCC	3 cut(s)	459, 2008, 2914
ClaI	ATCGAT	1 cut(s)	2340
CseI	GACGC	1 cut(s)	2521
Csp6I	GTAC	8 cut(s)	13, 137, 153, 359, 1049, 1380, 2652, 2861
CspAI	ACCGGT	1 cut(s)	901
CviQI	GTAC	8 cut(s)	13, 137, 153, 359, 1049, 1380, 2652, 2861
DraI	TTTAAA	1 cut(s)	2425
DraIII	CACNNNGTG	1 cut(s)	1535
DrdI	GACNNNNNNGTC	1 cut(s)	2117
DseDI	GACNNNNNNGTC	1 cut(s)	2117
EaeI	YGGCCR	2 cut(s)	733, 847
Eam1104I	CTCTTC	1 cut(s)	2160
EarI	CTCTTC	1 cut(s)	2160
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	1120
Eco24I	GRGCYC	1 cut(s)	2451
Eco31I	GGTCTC	1 cut(s)	1851
Eco47I	GGWCC	2 cut(s)	459, 2008
Eco57I	CTGAAG	2 cut(s)	2097, 2184
Eco81I	CCTNAGG	1 cut(s)	2271
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	459, 2914
EcoRI	GAATTC	1 cut(s)	2884
EcoT14I	CCWWGG	1 cut(s)	1120
EcoT22I	ATGCAT	1 cut(s)	2791
EcoT38I	GRGCYC	1 cut(s)	2451
ErhI	CCWWGG	1 cut(s)	1120
Esp3I	CGTCTC	1 cut(s)	461
FalI	AAGNNNNNCTT	6 cut(s)	1492, 1524, 1760, 1792, 2679, 2711
FaqI	GGGAC	3 cut(s)	472, 2079, 2123
FauI	CCCGC	3 cut(s)	115, 877, 1015
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	8 cut(s)	33, 411, 589, 1557, 1658, 2325, 2661, 2819
FokI	GGATG	5 cut(s)	584, 1067, 1073, 2042, 2940
FriOI	GRGCYC	1 cut(s)	2451
Fsp4HI	GCNGC	8 cut(s)	33, 411, 589, 1557, 1658, 2325, 2661, 2819
FspBI	CTAG	5 cut(s)	1199, 1347, 1661, 2822, 2864
GlaI	GCGC	1 cut(s)	2476
GluI	GCNGC	8 cut(s)	33, 411, 589, 1557, 1658, 2325, 2661, 2819
GsaI	CCCAGC	3 cut(s)	417, 712, 2155
GsuI	CTGGAG	1 cut(s)	2893
HaeIII	GGCC	5 cut(s)	591, 735, 849, 2288, 2916
HapII	CCGG	7 cut(s)	57, 87, 186, 902, 1096, 1410, 2657
HgaI	GACGC	1 cut(s)	2521
HhaI	GCGC	1 cut(s)	2477
Hin6I	GCGC	1 cut(s)	2475
HinP1I	GCGC	1 cut(s)	2475
HincII	GTYRAC	2 cut(s)	1344, 2676
HindII	GTYRAC	2 cut(s)	1344, 2676
HindIII	AAGCTT	4 cut(s)	518, 530, 1793, 2546
HpaI	GTTAAC	1 cut(s)	2676
HpaII	CCGG	7 cut(s)	57, 87, 186, 902, 1096, 1410, 2657
Hpy166II	GTNNAC	3 cut(s)	1344, 2654, 2676
Hpy8I	GTNNAC	3 cut(s)	1344, 2654, 2676
Hpy99I	CGWCG	2 cut(s)	1700, 2151
HpyAV	CCTTC	4 cut(s)	107, 180, 1762, 2557
HpyCH4IV	ACGT	2 cut(s)	135, 2146
HpyF10VI	GCNNNNNNNGC	9 cut(s)	500, 597, 718, 1125, 1199, 1526, 2056, 2157, 2330
HpySE526I	ACGT	2 cut(s)	135, 2146
HspAI	GCGC	1 cut(s)	2475
Kpn2I	TCCGGA	1 cut(s)	1409
Ksp22I	TGATCA	1 cut(s)	616
KspAI	GTTAAC	1 cut(s)	2676
LguI	GCTCTTC	1 cut(s)	2160
LmnI	GCTCC	4 cut(s)	89, 109, 808, 2279
Lsp1109I	GCAGC	6 cut(s)	397, 1543, 1669, 2311, 2672, 2830
MaeI	CTAG	5 cut(s)	1199, 1347, 1661, 2822, 2864
MaeII	ACGT	2 cut(s)	135, 2146
MbiI	CCGCTC	1 cut(s)	588
MfeI	CAATTG	2 cut(s)	1401, 1551
MflI	RGATCY	6 cut(s)	524, 628, 697, 895, 1874, 2126
MhlI	GDGCHC	2 cut(s)	1130, 2451
MlsI	TGGCCA	2 cut(s)	735, 849
MluNI	TGGCCA	2 cut(s)	735, 849
MlyI	GAGTC	4 cut(s)	313, 830, 978, 2228
MmeI	TCCRAC	4 cut(s)	1206, 1441, 2187, 2730
Mox20I	TGGCCA	2 cut(s)	735, 849
Mph1103I	ATGCAT	1 cut(s)	2791
MroI	TCCGGA	1 cut(s)	1409
MroXI	GAANNNNTTC	2 cut(s)	1772, 2466
MscI	TGGCCA	2 cut(s)	735, 849
MslI	CAYNNNNRTG	1 cut(s)	741
Msp20I	TGGCCA	2 cut(s)	735, 849
MspA1I	CMGCKG	3 cut(s)	1961, 2324, 2892
MspCI	CTTAAG	2 cut(s)	1790, 2759
MspI	CCGG	7 cut(s)	57, 87, 186, 902, 1096, 1410, 2657
MunI	CAATTG	2 cut(s)	1401, 1551
MvnI	CGCG	1 cut(s)	2475
MwoI	GCNNNNNNNGC	9 cut(s)	500, 597, 718, 1125, 1199, 1526, 2056, 2157, 2330
NlaIV	GGNNCC	4 cut(s)	460, 1129, 1387, 2087
NmuCI	GTSAC	6 cut(s)	202, 496, 1349, 1582, 1867, 2119
NsiI	ATGCAT	1 cut(s)	2791
NspI	RCATGY	3 cut(s)	721, 1423, 1993
OliI	CACNNNNGTG	1 cut(s)	741
PaeI	GCATGC	1 cut(s)	721
PagI	TCATGA	5 cut(s)	613, 1600, 1942, 2131, 2439
PciI	ACATGT	1 cut(s)	1989
PciSI	GCTCTTC	1 cut(s)	2160
PdmI	GAANNNNTTC	2 cut(s)	1772, 2466
Pfl23II	CGTACG	1 cut(s)	136
PflMI	CCANNNNNTGG	2 cut(s)	1051, 1382
PinAI	ACCGGT	1 cut(s)	901
PkrI	GCNGC	8 cut(s)	34, 412, 590, 1558, 1659, 2326, 2662, 2820
PleI	GAGTC	4 cut(s)	312, 830, 977, 2227
PpsI	GAGTC	4 cut(s)	312, 830, 977, 2227
Ppu21I	YACGTR	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	459
PscI	ACATGT	1 cut(s)	1989
Psp5II	RGGWCCY	1 cut(s)	459
PspFI	CCCAGC	3 cut(s)	413, 708, 2151
PspLI	CGTACG	1 cut(s)	136
PspN4I	GGNNCC	4 cut(s)	460, 1129, 1387, 2087
PspPI	GGNCC	3 cut(s)	459, 2008, 2914
PspPPI	RGGWCCY	1 cut(s)	459
PsrI	GAACNNNNNNTAC	2 cut(s)	1947, 1979
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	6 cut(s)	524, 628, 697, 895, 1874, 2126
PvuII	CAGCTG	2 cut(s)	1961, 2324
RsaI	GTAC	8 cut(s)	14, 138, 154, 360, 1050, 1381, 2653, 2862
RsaNI	GTAC	8 cut(s)	13, 137, 153, 359, 1049, 1380, 2652, 2861
RseI	CAYNNNNRTG	1 cut(s)	741
SapI	GCTCTTC	1 cut(s)	2160
SatI	GCNGC	8 cut(s)	33, 411, 589, 1557, 1658, 2325, 2661, 2819
Sau96I	GGNCC	3 cut(s)	459, 2008, 2914
ScaI	AGTACT	1 cut(s)	1381
SchI	GAGTC	4 cut(s)	313, 830, 978, 2228
SduI	GDGCHC	2 cut(s)	1130, 2451
SfcI	CTRYAG	3 cut(s)	756, 798, 1272
SinI	GGWCC	2 cut(s)	459, 2008
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	5 cut(s)	1644, 1790, 2060, 2504, 2759
SmoI	CTYRAG	5 cut(s)	1644, 1790, 2060, 2504, 2759
SpeI	ACTAGT	2 cut(s)	1346, 2863
SphI	GCATGC	1 cut(s)	721
SspI	AATATT	1 cut(s)	2024
SspMI	CTAG	5 cut(s)	1199, 1347, 1661, 2822, 2864
StyI	CCWWGG	1 cut(s)	1120
TaiI	ACGT	2 cut(s)	138, 2149
TaqI	TCGA	7 cut(s)	114, 307, 1187, 1242, 1966, 2340, 2777
TatI	WGTACW	3 cut(s)	1048, 1379, 2651
TauI	GCSGC	2 cut(s)	35, 591
TscAI	CASTG	7 cut(s)	338, 505, 1527, 1540, 1770, 1957, 2167
TseFI	GTSAC	6 cut(s)	202, 496, 1349, 1582, 1867, 2119
TseI	GCWGC	6 cut(s)	410, 1556, 1657, 2324, 2660, 2818
Tsp45I	GTSAC	6 cut(s)	202, 496, 1349, 1582, 1867, 2119
TspDTI	ATGAA	9 cut(s)	896, 1077, 1584, 1638, 1700, 1706, 2104, 2384, 2456
TspGWI	ACGGA	6 cut(s)	8, 593, 641, 964, 1869, 2731
TspRI	CASTG	7 cut(s)	338, 505, 1527, 1540, 1770, 1957, 2167
Van91I	CCANNNNNTGG	2 cut(s)	1051, 1382
Vha464I	CTTAAG	2 cut(s)	1790, 2759
VpaK11BI	GGWCC	2 cut(s)	459, 2008
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	8 cut(s)	352, 438, 680, 1000, 1229, 1888, 2039, 2884
XceI	RCATGY	3 cut(s)	721, 1423, 1993
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1660, 1738
XmnI	GAANNNNTTC	2 cut(s)	1772, 2466
XspI	CTAG	5 cut(s)	1199, 1347, 1661, 2822, 2864
ZrmI	AGTACT	1 cut(s)	1381
Zsp2I	ATGCAT	1 cut(s)	2791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.