Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395733.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 410

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395733.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

atggattcactcaaacttttcgtcaccttatatggtcacaagctgccagttctatgtctcgatgtctcatccgatggagagttgatagtgactggatctcaagacaaaaatgtgaagatttgggggctagattttggtgactgccacaaatcaatgtttgatcatcagagcagcgttcagcaagtacaatttgtgccaaatacccattactttgttagtgttggggatgataagcaagtaaactactgggatgctgataaatttgagttgcttttaactatgaagggacaccatgagggtgtttgttgcctcgctattagtaaccgtggtgatttctttgtcacgggatctcatgatcgctcaattcgccgctgggatcgtactgatgagccatttttccttgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

136

Amino Acids

15.59

Weight (kDa)

5.34

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	3 cut(s)	103, 355, 384
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	186, 382
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	62, 70
AlwI	GGATC	3 cut(s)	103, 355, 384
ApeKI	GCWGC	2 cut(s)	43, 171
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	16, 149, 341
BbvI	GCAGC	2 cut(s)	30, 183
BccI	CCATC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	62, 70
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	3 cut(s)	44, 172, 370
BlsI	GCNGC	3 cut(s)	45, 173, 371
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	325
Bse1I	ACTGG	3 cut(s)	47, 97, 251
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	3 cut(s)	68, 232, 256
BseNI	ACTGG	3 cut(s)	47, 97, 251
BseXI	GCAGC	2 cut(s)	30, 183
BseYI	CCCAGC	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	62, 70
BsmFI	GGGAC	1 cut(s)	300
Bsp143I	GATC	5 cut(s)	95, 160, 347, 355, 376
BspACI	CCGC	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	352
BspPI	GGATC	3 cut(s)	103, 355, 384
BsrI	ACTGG	3 cut(s)	47, 97, 251
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	5 cut(s)	95, 160, 347, 355, 376
Bst4CI	ACNGT	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	3 cut(s)	68, 232, 256
BstKTI	GATC	5 cut(s)	98, 163, 350, 358, 379
BstMAI	GTCTC	2 cut(s)	62, 70
BstMBI	GATC	5 cut(s)	95, 160, 347, 355, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	30, 183
BstX2I	RGATCY	2 cut(s)	95, 347
BstYI	RGATCY	2 cut(s)	95, 347
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	68, 232, 256
CciI	TCATGA	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	185, 381
CviAII	CATG	2 cut(s)	293, 353
CviJI	RGCY	3 cut(s)	43, 127, 391
CviKI_1	RGCY	3 cut(s)	43, 127, 391
CviQI	GTAC	2 cut(s)	185, 381
DpnI	GATC	5 cut(s)	97, 162, 349, 357, 378
DpnII	GATC	5 cut(s)	95, 160, 347, 355, 376
FaeI	CATG	2 cut(s)	296, 356
FaiI	YATR	6 cut(s)	31, 33, 55, 281, 294, 354
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	292, 352
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	44, 172, 370
FokI	GGATG	3 cut(s)	55, 239, 263
Fsp4HI	GCNGC	3 cut(s)	44, 172, 370
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	3 cut(s)	44, 172, 370
GsaI	CCCAGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	296, 356
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	3 cut(s)	16, 149, 341
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	73, 168
Hpy188III	TCNNGA	3 cut(s)	59, 101, 353
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	296, 356
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	95, 160, 347, 355, 376
LpnPI	CCDG	4 cut(s)	60, 78, 232, 358
Lsp1109I	GCAGC	2 cut(s)	30, 183
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	6 cut(s)	22, 35, 88, 137, 320, 340
MalI	GATC	5 cut(s)	97, 162, 349, 357, 378
MboI	GATC	5 cut(s)	95, 160, 347, 355, 376
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	2 cut(s)	95, 347
MluCI	AATT	3 cut(s)	188, 260, 363
MnlI	CCTC	3 cut(s)	289, 320, 397
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeII	GATC	5 cut(s)	95, 160, 347, 355, 376
NlaIII	CATG	2 cut(s)	296, 356
NmuCI	GTSAC	5 cut(s)	22, 35, 88, 137, 340
PagI	TCATGA	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	45, 173, 371
PspFI	CCCAGC	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	95, 347
RsaI	GTAC	2 cut(s)	186, 382
RsaNI	GTAC	2 cut(s)	185, 381
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	44, 172, 370
Sau3AI	GATC	5 cut(s)	95, 160, 347, 355, 376
SetI	ASST	3 cut(s)	29, 45, 408
SfaNI	GCATC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	99, 401
SmoI	CTYRAG	2 cut(s)	99, 401
Sse9I	AATT	3 cut(s)	188, 260, 363
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	1 cut(s)	60
TasI	AATT	3 cut(s)	188, 260, 363
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseFI	GTSAC	5 cut(s)	22, 35, 88, 137, 340
TseI	GCWGC	2 cut(s)	43, 171
Tsp45I	GTSAC	5 cut(s)	22, 35, 88, 137, 340
TspDTI	ATGAA	1 cut(s)	296
XapI	RAATTY	1 cut(s)	260
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.