Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038402.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

2155 .. 2496

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038402.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgtcaactagtgatactgaagtcaagctttggaatcctagtaccggtaactgccttcatactattgacattccaaatctagtgagtggttttatccttcccaataacaaatatgcactcgttggatctaagagtggaaatatggagattattgacaccgggaatgccactgtcactgaagtagtggaagctcatggtggttctgttcaatctattgtaagacttcccaatgaaaatggttttgtcgcaggaagtttggatggttatgttaagttctgggaatatgaagccaaacaaaagtctccccaagtatgtattctctaccttcttcaaatcctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

113

Amino Acids

12.29

Weight (kDa)

4.95

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	39, 198
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	209, 332
AhlI	ACTAGT	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	2 cut(s)	28, 191
AluI	AGCT	2 cut(s)	28, 191
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	133
AsiGI	ACCGGT	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	160
BaeI	ACNNNNGTAYC	1 cut(s)	39
BccI	CCATC	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	306
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	3 cut(s)	9, 39, 80
BfmI	CTRYAG	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	44
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	45, 159
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	168, 174
Cfr10I	RCCGGY	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	42
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	3 cut(s)	28, 191, 290
CviKI_1	RGCY	3 cut(s)	28, 191, 290
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	39, 198
FaeI	CATG	1 cut(s)	197
FaiI	YATR	8 cut(s)	60, 114, 143, 195, 267, 285, 313, 340
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	1 cut(s)	193
FokI	GGATG	1 cut(s)	272
FspBI	CTAG	3 cut(s)	9, 39, 80
HapII	CCGG	2 cut(s)	45, 159
Hin1II	CATG	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	2 cut(s)	45, 159
Hpy166II	GTNNAC	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	65, 107, 335
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	58, 172, 234, 262
MaeI	CTAG	3 cut(s)	9, 39, 80
MaeIII	GTNAC	2 cut(s)	47, 172
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	103
MseI	TTAA	1 cut(s)	270
MspI	CCGG	2 cut(s)	45, 159
MspR9I	CCNGG	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	125
NlaIII	CATG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	172
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	3 cut(s)	30, 193, 327
SfcI	CTRYAG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	8
SspMI	CTAG	3 cut(s)	9, 39, 80
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	175, 181
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	47, 246, 300
TspRI	CASTG	2 cut(s)	175, 181
XspI	CTAG	3 cut(s)	9, 39, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.