Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

9144434 .. 9148671

Gene Structure 4238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG123400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAAGATGATGGAGCTGGAGAAGAGGGAAAGATGGTCTCCGAAGTCTTTCAACATTTCCAAACTATTCGACCTGGCAAAAAGATATGGTCCATCTCTTTTTGTCCAAACCCTCCTAAGACTTGCCTAGCCACAATAGCCTTGTCTCTGAACGGTCATCTATGCGTATTTTATTCTCTTGAAAGCGAAGCAACAAATCATACACGCGATGACTTGAAGATCTTGTCTCTCTGCAAGGATGTTGGTCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACACTGCTGCTGCAGAAAAGTTGTAATCAGTTGATTTCCACTCCAGCTGTAAAACCAATATTGACTGGTTTAAAAGAGGTTCTTTATCCCAACTTAAAGGCAAAGAAGGATATTATTGGTTACAACCTTGCAGCAATGAATCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGATGCAATCTCCAAGCGTGGTGTAGGTGCAAGTTGGTATGCGAAGACAGAAGAAGGTAAACGTAAAAAAAGTTCGAACATGCGAACCGACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

188

Amino Acids

20.88

Weight (kDa)

9.18

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp12	PF04003	73 - 146	8.5e-08	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	564
AccI	GTMKAC	1 cut(s)	247
AccII	CGCG	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	561
AgsI	TTSAA	5 cut(s)	53, 182, 217, 266, 450
AjnI	CCWGG	2 cut(s)	73, 275
AluBI	AGCT	2 cut(s)	17, 332
AluI	AGCT	2 cut(s)	17, 332
Alw26I	GTCTC	3 cut(s)	43, 150, 231
ApeKI	GCWGC	3 cut(s)	292, 295, 416
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	90
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	279, 282, 428
BccI	CCATC	3 cut(s)	5, 28, 101
BciT130I	CCWGG	2 cut(s)	75, 277
BcoDI	GTCTC	3 cut(s)	43, 150, 231
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	296
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	3 cut(s)	293, 296, 417
BlsI	GCNGC	3 cut(s)	294, 297, 418
Bme1390I	CCNGG	2 cut(s)	75, 277
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	75, 277
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	2 cut(s)	39, 312
Bpu14I	TTCGAA	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	75, 277
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	279, 282, 428
Bsh1236I	CGCG	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	43, 150, 231
Bso31I	GGTCTC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	219, 452
BspFNI	CGCG	1 cut(s)	207
BspMAI	CTGCAG	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	219, 452
BssNI	GRCGYC	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	75, 277
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	545
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	222, 455
BstMAI	GTCTC	3 cut(s)	43, 150, 231
BstMBI	GATC	2 cut(s)	219, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	75, 277
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	2 cut(s)	73, 275
BstSFI	CTRYAG	1 cut(s)	296
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	279, 282, 428
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	2 cut(s)	443, 550
CviJI	RGCY	4 cut(s)	17, 131, 140, 332
CviKI_1	RGCY	4 cut(s)	17, 131, 140, 332
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	221, 454
DpnII	GATC	2 cut(s)	219, 452
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	73, 275
FaeI	CATG	2 cut(s)	446, 553
FaiI	YATR	7 cut(s)	88, 163, 201, 429, 444, 510, 551
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	2 cut(s)	442, 549
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	293, 296, 417
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	293, 296, 417
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	3 cut(s)	293, 296, 417
GsuI	CTGGAG	2 cut(s)	39, 312
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	2 cut(s)	446, 553
HinfI	GANTC	2 cut(s)	424, 446
Hpy166II	GTNNAC	2 cut(s)	248, 530
Hpy188I	TCNGA	3 cut(s)	43, 150, 566
Hpy188III	TCNNGA	4 cut(s)	179, 254, 450, 470
Hpy8I	GTNNAC	2 cut(s)	248, 530
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	2 cut(s)	385, 518
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	3 cut(s)	250, 532, 561
HpyCH4V	TGCA	7 cut(s)	234, 298, 416, 442, 461, 476, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	3 cut(s)	250, 532, 561
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	2 cut(s)	446, 553
Kzo9I	GATC	2 cut(s)	219, 452
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	9 cut(s)	3, 60, 87, 262, 267, 289, 336, 342, 483
Lsp1109I	GCAGC	3 cut(s)	279, 282, 428
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	3 cut(s)	250, 532, 561
MaeIII	GTNAC	2 cut(s)	283, 404
MalI	GATC	2 cut(s)	221, 454
MboI	GATC	2 cut(s)	219, 452
MboII	GAAGA	4 cut(s)	35, 229, 526, 533
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	2 cut(s)	266, 437
MnlI	CCTC	4 cut(s)	19, 123, 253, 355
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	2 cut(s)	356, 380
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	75, 277
MunI	CAATTG	1 cut(s)	437
MvaI	CCWGG	2 cut(s)	75, 277
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	219, 452
NlaIII	CATG	2 cut(s)	446, 553
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	424, 446
PkrI	GCNGC	3 cut(s)	294, 297, 418
Psp6I	CCWGG	2 cut(s)	73, 275
PspGI	CCWGG	2 cut(s)	73, 275
PspPI	GGNCC	1 cut(s)	90
PsrI	GAACNNNNNNTAC	2 cut(s)	526, 558
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	356, 380
SatI	GCNGC	3 cut(s)	293, 296, 417
Sau3AI	GATC	2 cut(s)	219, 452
Sau96I	GGNCC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	75, 277
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	1 cut(s)	90
Sse9I	AATT	2 cut(s)	266, 437
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	73, 275
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	3 cut(s)	253, 535, 564
TaqI	TCGA	2 cut(s)	70, 545
TasI	AATT	2 cut(s)	266, 437
TfiI	GAWTC	2 cut(s)	424, 446
Tru1I	TTAA	2 cut(s)	356, 380
Tru9I	TTAA	2 cut(s)	356, 380
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	3 cut(s)	292, 295, 416
TspDTI	ATGAA	3 cut(s)	17, 259, 437
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.