Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

7585886 .. 7590998

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGTGAAGGCTTACCAAAGATACGATGCAGCGACCTCTTTCGGTGTGATTTCATCTGTAGATTCGAACATAGCTTACGATTCGACGGGGAAGTATGTGCTTGCTCCGGCGTTGGAGAAGGTCGGAATATGGCACGTCCGGCAAGGTGTCTGCTCCAAAACCCTAACTCCTTCCTCCTCTCGCGGTGGACCATCTCTCGCCGTTACCTCTATAGCCTCCTCTGCTTCTAGCTTGGTGGCAGTTGGGTATGCAGATGGGAGCATAAGAATATGGGATACTGAGAAAGGAACTTGTGAGGTTAATTTTAATAGCCATAAGGGGGCGGTGACTGCTTTGCGGTACAATAAGGTTGGATCGATGCTTGCATCTGGAAGTAAAGATAATGATATTATCTTGTGGGATGTTGTTGGCGAATCAGGTCTTTTTCGTCTCCGTGGGCACCGAGATCAGGTCACAGATCTTGTATTCTTGGATGGTGGTAAGAAACTTGTAAGTTCATCTAAGGACAAGTTCTTGAGAGTCTGGGATCTTGAGACCCAACACTGTATGCAAATAGTTAGTGGTCATCATAGTGAAGTGTGGTCTGTTGATACTGATCCAGAGGAGAGATATGTTGTTACTGGGTCGGCTGATCAAGAACTTAGATTTTATGCTGTCAAGGAATATTCGTCTAACGGATCATTGGTATCTGACTCAAATGCAAATGAAATCAAGGCCAGTGAAGAACATTCGACAGAGAACAAGTGGGAAATTCTAAAGCTGTTTGGGGAAATTCAGAGACAAACTAAGGATAGAGTTGCGAGAGTTAGATTCAATGTTTCGGGAAAACTTCTGGCTTGTCAAATGGCAGGTAAAACTATTGAAATATTCCGGGTTTTGGATGAAGCTGAGGCTAAGCAGAAAGCAAAGCGTAGGCTTCGCAGAAAAGAGAAGAAGAGTTCCAAAGTGGGGGATGAAAATTCAACCGCTAATGGCGAAGCAAGTGCTAAAATTGAACTAGCTGATGCTGTTTCTAGTCCTACTGTCCTTGATGTTTTCAAGCTCTTACAAGTCATTAGAGCTGGGAGAAAAATCAGCTCTTTCTCTTTCTGTCCGACAGCTCCAAAAGAATCCTTAGGAACATTAGCTCTCTCTTTGAACAATAACTCACTGGAATTCTATTCCCTTAAAAGCAGCGAAAACGCGAAAACTGTTACCATTGAACACCAAGGACATCGCTCTGATGTGAGGAGTGTTACCCTCAGTGAAGACAACACCCTTTTGATGTCAACCAGTCACAGTGAAGTAAAAATTTGGAATCCCAGTACAGGTTCCTGCCTCCGGACCATTGATTCAGGATATGGATTATGCAGTTTGATTGTTCCCCAAAACAAGTATGGTATTGTTGGAACCAAGAGTGGGGTACTTGAAATCATTGATATAGGGAGCGCTACCAAAGTGGAAGAAGTGAAGGCTCATGGTGGCACTATTTGGTCAATTACACCTATTCCAAACGATAGCGGGTTTGTCACAGTCAGTGCAGATCATGAAGTCAAATTCTGGGAATACCAAGTCAAACAGAAATCTGGCAAGGCGACCAAGAAACTCACTGTTTCAAATGTTAAGTCCATGAAGATGAATGACGATGTACTTGCTGTTGCTATCAGCCCGGATGCTAAACACATAGCAGTTGCACTGCTTGATTCCACAGTGAAGGTTTTCTACATGGATTCCCTAAAATTCTACCTCTCCTTATATGGCCACAAGTTGCCTGTGATGTGCATTGACATCTCATCAGATGGAGAGTTGATTGTTACTGGTTCTCAGGACAAAAATTTGAAAATTTGGGGTTTGGATTTTGGTGATTGTCATAAGTCTATCTTTGCTCATGGTGACAGTGTCATGGGTGTAAAATTTGTTCGGAATACCCATTATCTGTTCAGCATTGGGAAAGACCGCCTCGTCAAGTATTGGGATGCTGACAAATTCGAGCATTTGTTAACGCTTGAAGGACATCATGCAGAGATTTGGTGCCTTGCTATCAGTAACCGTGGTGATTTTCTCGTAACAGGATCTCATGACCGCTCCATGCGTCGCTGGGATCGCTCTGAAGAACCTTTCTTCCTCGAGGAAGAGAAGGAAAAGAGGTTAGAAGAGCTTTTTGAGTCTGAGATTGATAATGCAGCAGATGACAGGCATGGACCCATGGAGGAAATTCCAGAGGAAGGTGTTGCAGCATTAGCTGGCAAGAAGACGATAGATGTTCTATCAGCTGCTGATTCAATTATAGATGCTCTGGAAGTAGCAGAAGATGAAACAAAGCGTCATGCTGCTTATGAGGAGGAGAAAACAAAGGGAAAAGTTCCTGAATACCTACCCAACGCTGTGATGTTCGGGCTTTCTCCGTCCGAATATGTTCTCAGGGCCATCTCAAATGTGAGAACAAATGATCTTGAGCAGACTTTGCTGGCTCTACCATTCTCAGATTCTTTGAAGTTTCTTTGCTACATGAAAGACTGGAGTTTAATTCCCGAAAAGGTAGAGTTGGTTAGCAGAATCGCAACCATTATATTACAGACACATCACAACCAGTTGGTAACAACACCATCTGCCAGACCAATCTTAAGCGTTCTCAGGGACATTCTTTACTCAGAAATCAAGGCATGCAAAGATACAATCGGTTTCAATTTGGCCGCCATGGATCATGTCAAGCAAATGATGGATGCAAGATCTGATGCTCCCTTCAAAGATGCAAAGGCCAAGCTATTGGAGATAAGGTCACAGCAAGCAAAACGTATGGCATCACGAGGAGATACAAAGATGGAGAAAAAGAGAAAGAAGAAGCAGAAGAAATTAGAGGAAGGACAACATGGCCATGCTTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

955

Amino Acids

106.06

Weight (kDa)

6.86

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR75_1st	PF23869	15 - 135	7.7e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_WDR5	PF25175	23 - 221	1.3e-32	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	23 - 186	1.5e-14	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	31 - 219	1.5e-72	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	32 - 238	2.3e-24	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	40 - 175	5.3e-15	WDR36/Utp21 first beta-propeller
Beta-prop_EML	PF23409	41 - 135	1.9e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd	PF25047	43 - 218	1.2e-14	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	64 - 176	5e-16	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	69 - 181	4.5e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP	PF24017	69 - 179	2.7e-12	SCAP Beta-propeller
WDR90_beta-prop_4th	PF23342	70 - 128	9.7e-07	WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	75 - 280	7.7e-19	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	75 - 208	6.9e-14	WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	76 - 177	7.3e-08	MABP1/WDR62 second WD40 domain
Beta-prop_IFT140_1st	PF23383	77 - 135	9e-06	IFT140 first beta-propeller
WD40_Prp19	PF24814	77 - 135	1.8e-10	Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	81 - 182	3.4e-07	WDR90/POC16, second beta-propeller
WDR55	PF24796	82 - 224	1.7e-13	WDR55
WD40	PF00400	96 - 134	2.1e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	105 - 238	1.6e-21	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	106 - 265	3.9e-07	Aladin seven-bladed propeller
WD40	PF00400	142 - 176	3.7e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	143 - 239	6.6e-14	Prp19 WD40 domain
WD40_Gbeta	PF25391	144 - 226	7.9e-06	G protein beta WD-40 repeat protein
EIF3I	PF24805	144 - 240	3.7e-10	EIF3I
WD40_WDHD1_1st	PF24817	150 - 241	1.8e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	172 - 290	3.9e-08	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	261 - 514	1.1e-13	CDC20/Fizzy WD40 domain
WDR55	PF24796	356 - 520	1.1e-07	WDR55
Beta-prop_WDR3_1st	PF25173	372 - 515	8.6e-13	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	374 - 521	6.5e-09	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	376 - 520	1e-05	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	379 - 620	4.6e-26	THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	403 - 651	2.9e-11	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	403 - 609	4.7e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd	PF25172	408 - 699	6.8e-135	WDR3 second beta-propeller domain
PEP5_VPS11_N	PF23341	451 - 570	5e-08	PEP5/VPS11 N-terminal
Beta-prop_WDR36-Utp21_2nd	PF25168	459 - 639	1.3e-10	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	461 - 655	1.5e-19	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	490 - 658	2.3e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	500 - 695	1.7e-15	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	532 - 696	4.6e-16	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	533 - 655	1e-13	WDHD1 first WD40 domain
WDR55	PF24796	536 - 706	1.5e-13	WDR55
Beta-prop_WDR36-Utp21_1st	PF25171	537 - 652	8.7e-08	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	538 - 694	8.6e-34	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	540 - 693	1.2e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	541 - 697	1.8e-29	WDR5 beta-propeller domain
WD40	PF00400	576 - 609	3.2e-08	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	617 - 693	3e-10	THOC3 beta-propeller domain
EIF3I	PF24805	623 - 695	1.2e-09	EIF3I
WD40	PF00400	658 - 694	3.5e-08	WD domain, G-beta repeat
Utp12	PF04003	796 - 898	4.9e-21	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1940
AbsI	CCTCGAGG	1 cut(s)	2105
Acc36I	ACCTGC	1 cut(s)	839
AccB1I	GGYRCC	2 cut(s)	438, 2010
AccBSI	CCGCTC	1 cut(s)	2064
AccII	CGCG	2 cut(s)	183, 1184
AccIII	TCCGGA	1 cut(s)	1320
AciI	CCGC	8 cut(s)	183, 323, 337, 966, 1500, 1936, 2062, 2673
AclWI	GGATC	7 cut(s)	361, 534, 590, 685, 2059, 2088, 2688
AcoI	YGGCCR	3 cut(s)	1738, 2670, 2851
AcuI	CTGAAG	1 cut(s)	2109
AfaI	GTAC	4 cut(s)	341, 1306, 1404, 1629
AfeI	AGCGCT	1 cut(s)	1429
AfiI	CCNNNNNNNGG	8 cut(s)	319, 448, 877, 948, 1307, 1320, 1398, 2204
AflII	CTTAAG	1 cut(s)	2602
AjiI	CACGTC	1 cut(s)	136
AloI	GAACNNNNNNTCC	2 cut(s)	2085, 2117
Alw26I	GTCTC	3 cut(s)	434, 527, 772
AlwI	GGATC	7 cut(s)	361, 534, 590, 685, 2059, 2088, 2688
AlwNI	CAGNNNCTG	1 cut(s)	2255
Ama87I	CYCGRG	1 cut(s)	2105
Aor13HI	TCCGGA	1 cut(s)	1320
Aor51HI	AGCGCT	1 cut(s)	1429
AoxI	GGCC	6 cut(s)	714, 1738, 2403, 2670, 2736, 2851
ApeKI	GCWGC	6 cut(s)	29, 1173, 2162, 2213, 2252, 2309
ArsI	GACNNNNNNTTYG	2 cut(s)	1589, 1621
Asp700I	GAANNNNTTC	2 cut(s)	1697, 2394
AspLEI	GCGC	1 cut(s)	1430
AspS9I	GGNCC	4 cut(s)	188, 1323, 2180, 2403
AsuC2I	CCSGG	2 cut(s)	872, 1649
AsuHPI	GGTGA	5 cut(s)	16, 337, 1853, 1883, 2045
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	2105
AvaII	GGWCC	3 cut(s)	188, 1323, 2180
AxyI	CCTNAGG	1 cut(s)	1114
BaeGI	GKGCMC	1 cut(s)	441
BalI	TGGCCA	2 cut(s)	1740, 2853
BanI	GGYRCC	2 cut(s)	438, 2010
BarI	GAAGNNNNNNTAC	2 cut(s)	1685, 1717
BauI	CACGAG	1 cut(s)	2784
BbsI	GAAGAC	2 cut(s)	1254, 2237
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	6 cut(s)	41, 1185, 2174, 2225, 2239, 2296
BccI	CCATC	8 cut(s)	199, 248, 467, 1772, 2414, 2593, 2692, 2794
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	4 cut(s)	965, 999, 1613, 1647
BciVI	GTATCC	1 cut(s)	268
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	2 cut(s)	872, 1649
BcoDI	GTCTC	3 cut(s)	434, 527, 772
BfaI	CTAG	3 cut(s)	228, 998, 1014
BfmI	CTRYAG	2 cut(s)	57, 210
BfoI	RGCGCY	1 cut(s)	1431
BfrI	CTTAAG	1 cut(s)	2602
BfuAI	ACCTGC	1 cut(s)	839
BfuI	GTATCC	1 cut(s)	268
BglII	AGATCT	2 cut(s)	457, 2708
BisI	GCNGC	7 cut(s)	30, 1174, 2163, 2214, 2253, 2310, 2673
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	7 cut(s)	31, 1175, 2164, 2215, 2254, 2311, 2674
Bme1390I	CCNGG	2 cut(s)	872, 1649
Bme18I	GGWCC	3 cut(s)	188, 1323, 2180
BmeT110I	CYCGRG	1 cut(s)	2105
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	4 cut(s)	188, 1323, 2180, 2403
BmiI	GGNNCC	5 cut(s)	440, 1312, 1390, 2012, 2182
BmrFI	CCNGG	2 cut(s)	872, 1649
BmrI	ACTGGG	2 cut(s)	630, 1296
BmuI	ACTGGG	2 cut(s)	630, 1296
BpiI	GAAGAC	2 cut(s)	1254, 2237
BpmI	CTGGAG	1 cut(s)	2518
Bpu10I	CCTNAGC	1 cut(s)	888
Bpu1102I	GCTNAGC	1 cut(s)	894
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	3 cut(s)	535, 551, 2453
BpuMI	CCSGG	2 cut(s)	872, 1649
Bsa29I	ATCGAT	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	5 cut(s)	433, 1207, 2029, 2184, 2676
BsaWI	WCCGGW	1 cut(s)	1320
BsaXI	ACNNNNNCTCC	4 cut(s)	151, 181, 2741, 2771
Bsc4I	CCNNNNNNNGG	8 cut(s)	319, 448, 877, 948, 1307, 1320, 1398, 2204
Bse1I	ACTGG	8 cut(s)	625, 717, 1155, 1272, 1302, 1801, 2501, 2569
Bse21I	CCTNAGG	1 cut(s)	1114
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	1320
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	5 cut(s)	433, 1207, 2029, 2184, 2676
BseGI	GGATG	7 cut(s)	406, 478, 886, 958, 1657, 1960, 2707
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	8 cut(s)	319, 448, 877, 948, 1307, 1320, 1398, 2204
BseMII	CTCAG	9 cut(s)	270, 879, 1255, 1817, 2139, 2413, 2475, 2626, 2643
BseNI	ACTGG	8 cut(s)	625, 717, 1155, 1272, 1302, 1801, 2501, 2569
BseRI	GAGGAG	7 cut(s)	166, 208, 617, 1243, 2333, 2336, 2802
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	6 cut(s)	41, 1185, 2174, 2225, 2239, 2296
BseYI	CCCAGC	2 cut(s)	1061, 2076
BsgI	GTGCAG	1 cut(s)	1539
Bsh1236I	CGCG	2 cut(s)	183, 1184
BshFI	GGCC	6 cut(s)	716, 1740, 2405, 2672, 2738, 2853
BshNI	GGYRCC	2 cut(s)	438, 2010
BshVI	ATCGAT	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	2105
BsiSI	CCGG	5 cut(s)	107, 139, 871, 1321, 1649
BslFI	GGGAC	1 cut(s)	2630
BslI	CCNNNNNNNGG	8 cut(s)	319, 448, 877, 948, 1307, 1320, 1398, 2204
BsmAI	GTCTC	3 cut(s)	434, 527, 772
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	2630
BsnI	GGCC	6 cut(s)	716, 1740, 2405, 2672, 2738, 2853
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	1 cut(s)	2105
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	1320
Bsp1720I	GCTNAGC	1 cut(s)	894
Bsp19I	CCATGG	2 cut(s)	2184, 2676
BspACI	CCGC	8 cut(s)	183, 323, 337, 966, 1500, 1936, 2062, 2673
BspANI	GGCC	6 cut(s)	716, 1740, 2405, 2672, 2738, 2853
BspCNI	CTCAG	9 cut(s)	271, 880, 1254, 1816, 2140, 2412, 2474, 2625, 2642
BspDI	ATCGAT	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	1320
BspFNI	CGCG	2 cut(s)	183, 1184
BspHI	TCATGA	2 cut(s)	1525, 2056
BspLI	GGNNCC	5 cut(s)	440, 1312, 1390, 2012, 2182
BspMI	ACCTGC	1 cut(s)	839
BspPI	GGATC	7 cut(s)	361, 534, 590, 685, 2059, 2088, 2688
BspQI	GCTCTTC	1 cut(s)	2127
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	2 cut(s)	438, 2010
BspTI	CTTAAG	1 cut(s)	2602
BspTNI	GGTCTC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	2064
BsrI	ACTGG	8 cut(s)	625, 717, 1155, 1272, 1302, 1801, 2501, 2569
BssECI	CCNNGG	5 cut(s)	433, 1207, 2029, 2184, 2676
BssSI	CACGAG	1 cut(s)	2784
BssT1I	CCWWGG	3 cut(s)	1207, 2184, 2676
Bst2BI	CACGAG	1 cut(s)	2784
Bst4CI	ACNGT	9 cut(s)	545, 1024, 1192, 1280, 1513, 1591, 1690, 1877, 2030
Bst6I	CTCTTC	3 cut(s)	929, 2106, 2127
BstAFI	CTTAAG	1 cut(s)	2602
BstAPI	GCANNNNNTGC	1 cut(s)	2443
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	6 cut(s)	102, 363, 2224, 2448, 2644, 2766
BstDSI	CCRYGG	4 cut(s)	433, 2029, 2184, 2676
BstF5I	GGATG	7 cut(s)	406, 478, 886, 958, 1657, 1960, 2707
BstFNI	CGCG	2 cut(s)	183, 1184
BstH2I	RGCGCY	1 cut(s)	1431
BstHHI	GCGC	1 cut(s)	1430
BstMAI	GTCTC	3 cut(s)	434, 527, 772
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 221, 329, 2082, 2219, 2443
BstNSI	RCATGY	1 cut(s)	2646
BstSCI	CCNGG	2 cut(s)	870, 1647
BstSFI	CTRYAG	2 cut(s)	57, 210
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	2 cut(s)	183, 1184
BstV1I	GCAGC	6 cut(s)	41, 1185, 2174, 2225, 2239, 2296
BstV2I	GAAGAC	2 cut(s)	1254, 2237
BstX2I	RGATCY	4 cut(s)	457, 526, 2051, 2708
BstXI	CCANNNNNNTGG	1 cut(s)	2746
BstYI	RGATCY	4 cut(s)	457, 526, 2051, 2708
Bsu15I	ATCGAT	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	1114
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	6 cut(s)	716, 1740, 2405, 2672, 2738, 2853
BsuTUI	ATCGAT	1 cut(s)	356
BtgI	CCRYGG	4 cut(s)	433, 2029, 2184, 2676
BtgZI	GCGATG	1 cut(s)	1199
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	7 cut(s)	406, 478, 886, 958, 1657, 1960, 2707
BtsI	GCAGTG	1 cut(s)	1673
BveI	ACCTGC	1 cut(s)	839
Cac8I	GCNNGC	6 cut(s)	102, 363, 2224, 2448, 2644, 2766
CaiI	CAGNNNCTG	1 cut(s)	2255
CciI	TCATGA	2 cut(s)	1525, 2056
CfoI	GCGC	1 cut(s)	1430
Cfr13I	GGNCC	4 cut(s)	188, 1323, 2180, 2403
ClaI	ATCGAT	1 cut(s)	356
CseI	GACGC	2 cut(s)	2060, 2291
Csp6I	GTAC	4 cut(s)	340, 1305, 1403, 1628
CviQI	GTAC	4 cut(s)	340, 1305, 1403, 1628
DrdI	GACNNNNNNGTC	1 cut(s)	1940
DseDI	GACNNNNNNGTC	1 cut(s)	1940
EaeI	YGGCCR	3 cut(s)	1738, 2670, 2851
Eam1104I	CTCTTC	3 cut(s)	929, 2106, 2127
EarI	CTCTTC	3 cut(s)	929, 2106, 2127
Eco130I	CCWWGG	3 cut(s)	1207, 2184, 2676
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	3 cut(s)	188, 1323, 2180
Eco47III	AGCGCT	1 cut(s)	1429
Eco57I	CTGAAG	1 cut(s)	2109
Eco81I	CCTNAGG	1 cut(s)	1114
Eco88I	CYCGRG	1 cut(s)	2105
EcoRI	GAATTC	1 cut(s)	1154
EcoT14I	CCWWGG	3 cut(s)	1207, 2184, 2676
ErhI	CCWWGG	3 cut(s)	1207, 2184, 2676
Esp3I	CGTCTC	1 cut(s)	434
FalI	AAGNNNNNCTT	2 cut(s)	1844, 1876
FaqI	GGGAC	1 cut(s)	2630
FauI	CCCGC	1 cut(s)	1493
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	7 cut(s)	30, 1174, 2163, 2214, 2253, 2310, 2673
FokI	GGATG	7 cut(s)	413, 485, 893, 965, 1664, 1967, 2714
Fsp4HI	GCNGC	7 cut(s)	30, 1174, 2163, 2214, 2253, 2310, 2673
FspBI	CTAG	3 cut(s)	228, 998, 1014
GlaI	GCGC	1 cut(s)	1429
GluI	GCNGC	7 cut(s)	30, 1174, 2163, 2214, 2253, 2310, 2673
GsaI	CCCAGC	2 cut(s)	1065, 2080
GsuI	CTGGAG	1 cut(s)	2518
HaeII	RGCGCY	1 cut(s)	1431
HaeIII	GGCC	6 cut(s)	716, 1740, 2405, 2672, 2738, 2853
HapII	CCGG	5 cut(s)	107, 139, 871, 1321, 1649
HgaI	GACGC	2 cut(s)	2060, 2291
HhaI	GCGC	1 cut(s)	1430
Hin6I	GCGC	1 cut(s)	1428
HinP1I	GCGC	1 cut(s)	1428
HincII	GTYRAC	2 cut(s)	1269, 1980
HindII	GTYRAC	2 cut(s)	1269, 1980
HpaI	GTTAAC	1 cut(s)	1980
HpaII	CCGG	5 cut(s)	107, 139, 871, 1321, 1649
HphI	GGTGA	5 cut(s)	16, 337, 1853, 1883, 2045
Hpy166II	GTNNAC	3 cut(s)	188, 1269, 1980
Hpy8I	GTNNAC	3 cut(s)	188, 1269, 1980
Hpy99I	CGWCG	2 cut(s)	88, 2076
HpyAV	CCTTC	9 cut(s)	112, 180, 1444, 1687, 1982, 2110, 2198, 2731, 2834
HpyCH4III	ACNGT	9 cut(s)	545, 1024, 1192, 1280, 1513, 1591, 1690, 1877, 2030
HpyCH4IV	ACGT	2 cut(s)	135, 2773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 221, 329, 2082, 2219, 2443
HpySE526I	ACGT	2 cut(s)	135, 2773
HspAI	GCGC	1 cut(s)	1428
Kpn2I	TCCGGA	1 cut(s)	1320
Ksp22I	TGATCA	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	1980
LguI	GCTCTTC	1 cut(s)	2127
LmnI	GCTCC	7 cut(s)	109, 158, 258, 1105, 1425, 2069, 2722
Lsp1109I	GCAGC	6 cut(s)	41, 1185, 2174, 2225, 2239, 2296
MaeI	CTAG	3 cut(s)	228, 998, 1014
MaeII	ACGT	2 cut(s)	135, 2773
MbiI	CCGCTC	1 cut(s)	2064
MflI	RGATCY	4 cut(s)	457, 526, 2051, 2708
MhlI	GDGCHC	1 cut(s)	441
MlsI	TGGCCA	2 cut(s)	1740, 2853
MluNI	TGGCCA	2 cut(s)	1740, 2853
MlyI	GAGTC	3 cut(s)	528, 686, 2153
MmeI	TCCRAC	5 cut(s)	93, 103, 331, 1118, 1366
Mox20I	TGGCCA	2 cut(s)	1740, 2853
MroI	TCCGGA	1 cut(s)	1320
MroXI	GAANNNNTTC	2 cut(s)	1697, 2394
MscI	TGGCCA	2 cut(s)	1740, 2853
MseI	TTAA	7 cut(s)	300, 306, 1167, 1602, 1979, 2504, 2603
MslI	CAYNNNNRTG	3 cut(s)	570, 1613, 2853
Msp20I	TGGCCA	2 cut(s)	1740, 2853
MspA1I	CMGCKG	1 cut(s)	2252
MspCI	CTTAAG	1 cut(s)	2602
MspI	CCGG	5 cut(s)	107, 139, 871, 1321, 1649
MspR9I	CCNGG	2 cut(s)	872, 1649
MvnI	CGCG	2 cut(s)	183, 1184
MwoI	GCNNNNNNNGC	6 cut(s)	139, 221, 329, 2082, 2219, 2443
NciI	CCSGG	2 cut(s)	872, 1649
NcoI	CCATGG	2 cut(s)	2184, 2676
NlaIV	GGNNCC	5 cut(s)	440, 1312, 1390, 2012, 2182
NmuCI	GTSAC	6 cut(s)	325, 451, 1274, 1507, 1871, 2757
NspI	RCATGY	1 cut(s)	2646
NspV	TTCGAA	1 cut(s)	65
PaeI	GCATGC	1 cut(s)	2646
PaeR7I	CTCGAG	1 cut(s)	2105
PagI	TCATGA	2 cut(s)	1525, 2056
PciSI	GCTCTTC	1 cut(s)	2127
PdmI	GAANNNNTTC	2 cut(s)	1697, 2394
PflFI	GACNNNGTC	1 cut(s)	1877
PkrI	GCNGC	7 cut(s)	31, 1175, 2164, 2215, 2254, 2311, 2674
PleI	GAGTC	3 cut(s)	527, 686, 2152
PpsI	GAGTC	3 cut(s)	527, 686, 2152
PspFI	CCCAGC	2 cut(s)	1061, 2076
PspN4I	GGNNCC	5 cut(s)	440, 1312, 1390, 2012, 2182
PspPI	GGNCC	4 cut(s)	188, 1323, 2180, 2403
PspXI	VCTCGAGB	1 cut(s)	2105
PsrI	GAACNNNNNNTAC	4 cut(s)	59, 91, 1881, 1913
PstNI	CAGNNNCTG	1 cut(s)	2255
PsuI	RGATCY	4 cut(s)	457, 526, 2051, 2708
PsyI	GACNNNGTC	1 cut(s)	1877
PvuII	CAGCTG	1 cut(s)	2252
RsaI	GTAC	4 cut(s)	341, 1306, 1404, 1629
RsaNI	GTAC	4 cut(s)	340, 1305, 1403, 1628
RseI	CAYNNNNRTG	3 cut(s)	570, 1613, 2853
SapI	GCTCTTC	1 cut(s)	2127
SaqAI	TTAA	7 cut(s)	300, 306, 1167, 1602, 1979, 2504, 2603
SatI	GCNGC	7 cut(s)	30, 1174, 2163, 2214, 2253, 2310, 2673
Sau96I	GGNCC	4 cut(s)	188, 1323, 2180, 2403
SchI	GAGTC	3 cut(s)	528, 686, 2153
ScrFI	CCNGG	2 cut(s)	872, 1649
SduI	GDGCHC	1 cut(s)	441
SfcI	CTRYAG	2 cut(s)	57, 210
Sfr274I	CTCGAG	1 cut(s)	2105
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	3 cut(s)	188, 1323, 2180
SlaI	CTCGAG	1 cut(s)	2105
SmiMI	CAYNNNNRTG	3 cut(s)	570, 1613, 2853
SmlI	CTYRAG	5 cut(s)	514, 530, 2105, 2432, 2602
SmoI	CTYRAG	5 cut(s)	514, 530, 2105, 2432, 2602
SphI	GCATGC	1 cut(s)	2646
SsiI	CCGC	8 cut(s)	183, 323, 337, 966, 1500, 1936, 2062, 2673
SspI	AATATT	2 cut(s)	665, 867
SspMI	CTAG	3 cut(s)	228, 998, 1014
StyD4I	CCNGG	2 cut(s)	870, 1647
StyI	CCWWGG	3 cut(s)	1207, 2184, 2676
TaaI	ACNGT	9 cut(s)	545, 1024, 1192, 1280, 1513, 1591, 1690, 1877, 2030
TaiI	ACGT	2 cut(s)	138, 2776
TaqI	TCGA	6 cut(s)	65, 83, 356, 731, 1968, 2106
TatI	WGTACW	2 cut(s)	1304, 1627
TauI	GCSGC	1 cut(s)	2675
Tru1I	TTAA	7 cut(s)	300, 306, 1167, 1602, 1979, 2504, 2603
Tru9I	TTAA	7 cut(s)	300, 306, 1167, 1602, 1979, 2504, 2603
TseFI	GTSAC	6 cut(s)	325, 451, 1274, 1507, 1871, 2757
TseI	GCWGC	6 cut(s)	29, 1173, 2162, 2213, 2252, 2309
Tsp45I	GTSAC	6 cut(s)	325, 451, 1274, 1507, 1871, 2757
TspGWI	ACGGA	3 cut(s)	422, 690, 2373
Tth111I	GACNNNGTC	1 cut(s)	1877
Vha464I	CTTAAG	1 cut(s)	2602
VpaK11BI	GGWCC	3 cut(s)	188, 1323, 2180
XceI	RCATGY	1 cut(s)	2646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1373
XhoI	CTCGAG	1 cut(s)	2105
XmnI	GAANNNNTTC	2 cut(s)	1697, 2394
XspI	CTAG	3 cut(s)	228, 998, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.