Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

14152043 .. 14152519

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTTAGCTCCTTCTTAAACATTGATGGTGCTTTTGTTAATCATTCAAAGAAGGGTGGACTTGGTTTTTTAGTAAGGGACTCTGCAGCTATTATTGAGACTGATTGTCTCCTTCTGCAACAACAACTATGTCAAAGGGGTATGAGCAATACATCTGAGTTGGGAAGAATTTATGAAGACCTGAAGCATGAAATGGCGTTGCTCCACCAGTTGCGGGTAGTCCATGTTAAACGTGATGATGCTAAGAAAGCTGCACATGCAATAGCCGCTTATGCTGCTATTAATAGCCAGGAATTCTCTTGGTCTAATGTCCCTAGTTTTATTCAAGATGTCATTGCTTCAGAACTATGTACCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

6.17

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	214, 267
AcsI	RAATTY	2 cut(s)	168, 293
AcuI	CTGAAG	2 cut(s)	203, 324
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	48, 326
AhdI	GACNNNNNGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	9, 89, 251
AluI	AGCT	3 cut(s)	9, 89, 251
Alw26I	GTCTC	2 cut(s)	92, 113
ApeKI	GCWGC	3 cut(s)	86, 251, 275
ApoI	RAATTY	2 cut(s)	168, 293
AseI	ATTAAT	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	98, 238, 262
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	92, 113
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	4 cut(s)	87, 252, 267, 276
BlsI	GCNGC	4 cut(s)	88, 253, 268, 277
Bme1390I	CCNGG	1 cut(s)	290
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	98, 238, 262
BsgI	GTGCAG	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	92, 296
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	92, 113
BsmFI	GGGAC	2 cut(s)	92, 296
BspACI	CCGC	2 cut(s)	214, 267
BspCNI	CTCAG	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	156, 243
BstMAI	GTCTC	2 cut(s)	92, 113
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 257, 266, 272, 275
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	98, 238, 262
BstV2I	GAAGAC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	3 cut(s)	188, 224, 257
CviJI	RGCY	5 cut(s)	9, 89, 251, 266, 288
CviKI_1	RGCY	5 cut(s)	9, 89, 251, 266, 288
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	156, 243
DriI	GACNNNNNGTC	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	203, 324
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	3 cut(s)	191, 227, 260
FaiI	YATR	8 cut(s)	130, 143, 174, 189, 225, 258, 273, 349
FaqI	GGGAC	2 cut(s)	92, 296
FatI	CATG	3 cut(s)	187, 223, 256
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	87, 252, 267, 276
Fsp4HI	GCNGC	4 cut(s)	87, 252, 267, 276
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	4 cut(s)	87, 252, 267, 276
Hin1II	CATG	3 cut(s)	191, 227, 260
HinfI	GANTC	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	157, 343
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	22, 46, 122
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	86, 118, 254, 260
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 257, 266, 272, 275
HpyF3I	CTNAG	2 cut(s)	156, 243
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	191, 227, 260
LmnI	GCTCC	2 cut(s)	14, 207
LpnPI	CCDG	4 cut(s)	194, 221, 275, 302
Lsp1109I	GCAGC	3 cut(s)	98, 238, 262
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	232
MboII	GAAGA	2 cut(s)	177, 188
MluCI	AATT	2 cut(s)	168, 293
MlyI	GAGTC	1 cut(s)	74
MseI	TTAA	5 cut(s)	17, 39, 228, 282, 358
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	248, 257, 266, 272, 275
NlaIII	CATG	3 cut(s)	191, 227, 260
NspI	RCATGY	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	88, 253, 268, 277
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PshBI	ATTAAT	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	5 cut(s)	17, 39, 228, 282, 358
SatI	GCNGC	4 cut(s)	87, 252, 267, 276
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	5 cut(s)	11, 91, 183, 235, 253
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	168, 293
SsiI	CCGC	2 cut(s)	214, 267
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	235
TasI	AATT	2 cut(s)	168, 293
TauI	GCSGC	1 cut(s)	269
Tru1I	TTAA	5 cut(s)	17, 39, 228, 282, 358
Tru9I	TTAA	5 cut(s)	17, 39, 228, 282, 358
TseI	GCWGC	3 cut(s)	86, 251, 275
TspDTI	ATGAA	2 cut(s)	189, 204
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	2 cut(s)	168, 293
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.