Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

57412508 .. 57414930

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTATCCAAGGTATTAAAAAGCGCGCCGCGCCTCAGGCGCGACTTGAGGCGTGAAAGGCTGGATTTCTCCATTAAAACGCCTGTGTTTTCCCAGCAAGGCGCAGAGGCGTACAAAACGTATGCTTTTTCCCGTAAGGCGCAAAAAAGCGCTGAAAACATGATCAAGGCGTACGCCCCATCTGATGCTGCTGCAGTTTGGAGGTTCAGAACTTCTTTCTCTCTCCTTAGTGCAGATGGAGAGAAAAGGCAGAGTCCAGCAAAGAAGGATATTATTGGTTACAACCTTGCAGCAATGAATCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGATGCCATCTCCAAGCGTGGTGTAGGTGCAAGTTGTCACCAAAATCTAGCCCCCAAATCTTCACATTTTTGTCTTCAGATCCAGTCACTATCAGATCTCCGTCGGATGAGACATCCAGACATAGCACTGGCAGCTTGTGACCATAAGGTTAGGAAAAGTTTGAGTGAATCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

173

Amino Acids

19.38

Weight (kDa)

10.22

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	26, 31, 42
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	113, 173
AfeI	AGCGCT	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	324
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	1 cut(s)	418
Aor51HI	AGCGCT	1 cut(s)	151
ApeKI	GCWGC	4 cut(s)	188, 191, 290, 476
AspLEI	GCGC	7 cut(s)	26, 28, 33, 42, 104, 142, 152
AsuHPI	GGTGA	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	175, 178, 302, 488
BccI	CCATC	3 cut(s)	187, 230, 359
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	153
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	5 cut(s)	29, 189, 192, 291, 477
BlsI	GCNGC	5 cut(s)	30, 190, 193, 292, 478
BmsI	GCATC	2 cut(s)	175, 337
BpiI	GAAGAC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	9
Bse1I	ACTGG	2 cut(s)	427, 477
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	456, 457
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	2 cut(s)	427, 477
BsePI	GCGCGC	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	175, 178, 302, 488
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	3 cut(s)	26, 31, 42
BsiWI	CGTACG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	162, 326, 423, 439
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	3 cut(s)	26, 31, 42
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	427, 477
BssECI	CCNNGG	1 cut(s)	9
BssHII	GCGCGC	1 cut(s)	24
BssMI	GATC	4 cut(s)	162, 326, 423, 439
BssT1I	CCWWGG	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	35, 227
BstF5I	GGATG	2 cut(s)	456, 457
BstFNI	CGCG	3 cut(s)	26, 31, 42
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	7 cut(s)	26, 28, 33, 42, 104, 142, 152
BstKTI	GATC	4 cut(s)	165, 329, 426, 442
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	4 cut(s)	162, 326, 423, 439
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 37, 39, 58, 476
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	3 cut(s)	26, 31, 42
BstV1I	GCAGC	4 cut(s)	175, 178, 302, 488
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	423, 439
BstYI	RGATCY	2 cut(s)	423, 439
Bsu36I	CCTNAGG	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	456, 457
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	7 cut(s)	26, 28, 33, 42, 104, 142, 152
Csp6I	GTAC	2 cut(s)	112, 172
CviAII	CATG	2 cut(s)	160, 317
CviJI	RGCY	3 cut(s)	61, 395, 479
CviKI_1	RGCY	3 cut(s)	61, 395, 479
CviQI	GTAC	2 cut(s)	112, 172
DdeI	CTNAG	2 cut(s)	35, 227
DpnI	GATC	4 cut(s)	164, 328, 425, 441
DpnII	GATC	4 cut(s)	162, 326, 423, 439
Eco130I	CCWWGG	1 cut(s)	9
Eco47III	AGCGCT	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	404
Eco81I	CCTNAGG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	163, 320
FaiI	YATR	8 cut(s)	123, 161, 303, 318, 467, 489, 518, 520
FatI	CATG	2 cut(s)	159, 316
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	29, 189, 192, 291, 477
FokI	GGATG	2 cut(s)	444, 463
Fsp4HI	GCNGC	5 cut(s)	29, 189, 192, 291, 477
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	7 cut(s)	25, 27, 32, 41, 103, 141, 151
GluI	GCNGC	5 cut(s)	29, 189, 192, 291, 477
GsaI	CCCAGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	153
HhaI	GCGC	7 cut(s)	26, 28, 33, 42, 104, 142, 152
Hin1II	CATG	2 cut(s)	163, 320
Hin6I	GCGC	7 cut(s)	24, 26, 31, 40, 102, 140, 150
HinP1I	GCGC	7 cut(s)	24, 26, 31, 40, 102, 140, 150
HinfI	GANTC	4 cut(s)	253, 298, 320, 512
HphI	GGTGA	1 cut(s)	374
Hpy188I	TCNGA	5 cut(s)	184, 209, 423, 439, 450
Hpy188III	TCNNGA	3 cut(s)	324, 344, 461
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	6 cut(s)	194, 233, 290, 316, 335, 374
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 37, 39, 58, 476
HpyF3I	CTNAG	2 cut(s)	35, 227
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	163, 320
HspAI	GCGC	7 cut(s)	24, 26, 31, 40, 102, 140, 150
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	162, 326, 423, 439
LpnPI	CCDG	9 cut(s)	22, 47, 96, 107, 270, 357, 440, 458, 474
Lsp1109I	GCAGC	4 cut(s)	175, 178, 302, 488
LweI	GCATC	2 cut(s)	175, 337
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	4 cut(s)	278, 380, 429, 482
MalI	GATC	4 cut(s)	164, 328, 425, 441
MboI	GATC	4 cut(s)	162, 326, 423, 439
MboII	GAAGA	2 cut(s)	396, 410
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	2 cut(s)	423, 439
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	4 cut(s)	42, 44, 100, 195
MseI	TTAA	2 cut(s)	17, 75
MteI	GCGCNGCGC	1 cut(s)	29
MunI	CAATTG	1 cut(s)	311
MvnI	CGCG	3 cut(s)	26, 31, 42
MwoI	GCNNNNNNNGC	5 cut(s)	30, 37, 39, 58, 476
NdeII	GATC	4 cut(s)	162, 326, 423, 439
NlaIII	CATG	2 cut(s)	163, 320
NmuCI	GTSAC	3 cut(s)	380, 429, 482
PauI	GCGCGC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	298, 320, 512
Pfl23II	CGTACG	1 cut(s)	171
PkrI	GCNGC	5 cut(s)	30, 190, 193, 292, 478
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	93
PspLI	CGTACG	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	423, 439
PteI	GCGCGC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	113, 173
RsaNI	GTAC	2 cut(s)	112, 172
SaqAI	TTAA	2 cut(s)	17, 75
SatI	GCNGC	5 cut(s)	29, 189, 192, 291, 477
Sau3AI	GATC	4 cut(s)	162, 326, 423, 439
SchI	GAGTC	1 cut(s)	262
SetI	ASST	7 cut(s)	15, 122, 206, 288, 373, 481, 495
SfaNI	GCATC	2 cut(s)	175, 337
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	122
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	298, 320, 512
Tru1I	TTAA	2 cut(s)	17, 75
Tru9I	TTAA	2 cut(s)	17, 75
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	3 cut(s)	380, 429, 482
TseI	GCWGC	4 cut(s)	188, 191, 290, 476
Tsp45I	GTSAC	3 cut(s)	380, 429, 482
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	477
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.