Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

16787702 .. 16795663

Gene Structure 7962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1106200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGGTGAAGTCGTACCTGCGGTATGAGCAGGCGGTGGCTTTCGGTGTCATTGTCTCCGTCGATTCCAACATCACATACGGCAGCTCCGGGAAGCACCTTCTTGCTCCGGCCTTGGAGAAGGTAGGTGTGTGGCATGTACGGCAAGGCGTTTGTACCAGAACACTAATCCCTGCTGCTGCATCGCGGGGACACTCTCTATCTGTCACCTCCATCGCATCCTCGCATACTTCTATGGTAGCTAGTGGGTATGCTGATGGTAGTATAAGAATTTGGGATTCCGACAAAGGAACCTGCGAGACCACATTGAATGGACATAAAGGAGCTGTCACCGCTTTACGCTACAACAAGCTTGGATCTATGCTTGCATCTGGAGGAAAAGATAATGACATTATATTATGGGATGTGGTTGGTGAGACCGGCCTATATCGCCTCCGTGGCCATCGAGATCAGGTGACTGACCTCCTTTTCCTGGATTCTGGTAAAAAACTCGTCAGTTCCTCAAAAGATAAATTTTTGAGGGTGTGGGATCTTGATACCCAGCATTGCATGCAGACAATTAGTGGCCACCATAGCGAAATTTGGTCCATAGACAGTGATGCAGAAGAAAGATATTTGGTCACTGGGTCTTCGGATCCAGAACTTAGGTTTTACACAATTAAGCATGAAGTGATACATGAGGAATCCATTTCTAATATAGGCGAAAATGAAATTGTGAATGATGGAGAGTCATCGACCAAAAATAAATGGGAAGTTTTGAAACTGTTTGGTGAAGTTCAGCGACAAAGCAAGGATAGAGTTGCAACTGTGAGATTCAACAAGTCTGGTAATTTGTTGGCTTGTCAAGTGGCAGGTAAGACAGTAGATGTATTCCAGGTACTAGATGAGGCTGAATCAAAGCGTAAGGCAAAACGTAGGCTTCACCGGAAGAAAGAAAAAAAATCTGCAAAAGGGGCAACTGAGGTGATGGAAAATGGCGACACAAATCACGGAGCTGGAGAAGAAGGAAATAGTCCTGTGGTTATGGTTCCTGATGTCTTCAAGCTTCTTCAAACTATTCGAGCTAGCAAAAAGATATGCTCCATCTCTTTCTGTCCTAACACTCCAAAGAGTTTGCTAGCTACAATAGCTTTGTCTTTGAACAATAATTCATTGGAATTTTATTCGATTGAAAGCAAAGCAACAACAAAAACACATACTATAGAGCTCCAAGGGCACCGGTCTGATGTCAGAAGTGTTACACTTAGCTCAGACAACACACTCTTGATGTCAACTAGTCACAATGCGGTAAAGATTTGGAATCCAAGCACTGGTTCCTGCCTTCGAACTATTGATTCTGGATATGGCATGTGTGGTTTTATCGTTCCTAATAGCAAGTATGCACTTGTCGGAACTAAAGGCGGAACAGTGGAAATTATTGACATTGGAAGTGGCACTTGCATTGAAGTAGTGGAAGCTCATGGTGGCACTGTTGGCTCCATTGCAGCCATTCCCAATGAAAATGGTTTTGTCACAGGAAGTGCAGATCACGATGTGAAGTTTTGGGAATACCAAGTTAAACAAAAGTCTCCCCAAGACTCTAAGCACCTAACGGTGTCAAATGTAAGGACTATGAAGATGAATGATGATGTCCTTGTGGTTGCTGTCAGCCCTGATGCAAAATATGTTTTGGTTGCTCTGTTGGACTGCACAGTGAAGGTTTACTATATGGATACGTTGAAACCTTTCCTTTCCTTATATGGTCACAAGCTGCCTGTTCTATGCATGGATTTATCATCTGATGGCGATCTATTAGTGACTGGATCTGCTGACAAAAATTTGAAGATTTGGGGTTTAGATTTTGGTGATTGTCATAAATCCATATTCGCTCATGCTGACAGTGTCATGGCGGTGCAATTTGTACGAAATACACATTACATGTTTAGTGTCGGGAAAGATCGCCTAGTCAAATACTGGGACGCTGATAAATTTGAGTTGCTTTTAACTCTTGAGGGACACCATGCGGATGTTTGGTGCCTTGGAATTAGTAACCGTGGTGATTTCATTGTTACGGGATCTCATGACCGATCAATACGTCGTTGGGATCGTACTGAAGAGCCCTTTTTTATCGAGGAAGAGAAAGAGAAAAGGTTGGAAGAGATGTTTGAGTCTGACCTCGATAATGCATTTGAGAACAAGTATGCACCCACGGAAGAAATTCCTGAAGAGGGAGCTGTGGCCTTAGCAGGGAAGAAATCAAAAGAAACAATTACAGCTACTGATTCAATTATTGACGCACTAGATATAGCAGAGGTAGAATTGAAGCGAATCGCCGAACATGAGGAGGAGAAAAGCAAGGGGAAAGTTGCTGAGTTACAACCAAATGTTGTTTTGCTTGGGCTCTCTCCATCTGATTATGTTCTTCGTGCCCTTTCAAATGTTCAGACAAATGATCTGGAACAGACGCTACTGGCTCTATCATTCTCAGACGCTTTGAAGCTCTTGTCTTTCTTGAAGGACTGGACTTCGAATCCTGATAAGATTGAACTTGTTTGCAGGGTTTGTACATTCCTGGTGCAGATACATTATAATCAGTTACTTAGTACGCTGGCAGCCAGACTTGTGTTGTCAGAGTTGGAAGAGATTTATCCAAGAGTTAAGGAATGCAAAGATACTATTGGTTACAACATTGCAGCAATGGAGCATATTAAGCAACTGAGGGCTTCGAAATCAGGTGGATTGTTTCAAGATGCAAAATCAAAGTTACAGGAAATTCGTGCGCAGCATTCTAAGAGTCTAGAAGCAAGGACAAATACGAGAGAAGAAAATGGAAGAAAGAGGAGGAGAAAGAGCAAGAATCCAAGTGACGTACATGTTAGATTGTTCGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

957

Amino Acids

106.15

Weight (kDa)

6.48

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR75_1st	PF23869	17 - 136	6.5e-08	WD repeat-containing protein 75 first beta-propeller
Beta-prop_THOC3	PF25174	25 - 220	1.9e-29	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	29 - 222	2.7e-34	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	31 - 222	1.1e-21	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	31 - 219	7e-73	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	39 - 217	5.5e-13	WDR36/Utp21 first beta-propeller
Beta-prop_TEP1_2nd	PF25047	42 - 216	5.6e-17	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	42 - 182	1.3e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML	PF23409	43 - 135	1.1e-08	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	60 - 120	6.5e-06	Prp19 WD40 domain
WD40_Gbeta	PF25391	61 - 138	1.4e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	63 - 176	1e-17	WDR3 second beta-propeller domain
WDR90_beta-prop_4th	PF23342	67 - 130	6.9e-07	WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	73 - 262	3.1e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2	PF23414	76 - 221	2.9e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP	PF24017	78 - 181	9.8e-14	SCAP Beta-propeller
WD40	PF00400	96 - 134	7.1e-08	WD domain, G-beta repeat
EIF3I	PF24805	101 - 185	1.1e-08	EIF3I
Beta-prop_Aladin	PF25460	107 - 197	8.8e-06	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	108 - 187	2.4e-10	WDHD1 first WD40 domain
WD40_Prp19	PF24814	109 - 222	4.3e-19	Prp19 WD40 domain
WD40_Gbeta	PF25391	126 - 221	3.6e-07	G protein beta WD-40 repeat protein
WD40	PF00400	141 - 176	2.1e-06	WD domain, G-beta repeat
WDR55	PF24796	141 - 217	1.2e-06	WDR55
EIF3I	PF24805	144 - 246	7.9e-10	EIF3I
WD40_WDHD1_1st	PF24817	150 - 291	3.3e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	172 - 290	9.2e-08	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	261 - 451	2.5e-06	CDC20/Fizzy WD40 domain
WDR55	PF24796	351 - 520	6.5e-08	WDR55
Beta-prop_WDR5	PF25175	355 - 558	2.1e-16	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	356 - 515	1.1e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	380 - 619	4.8e-26	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	381 - 521	5.7e-08	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	388 - 651	5.2e-12	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	408 - 699	2e-135	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	427 - 693	1.9e-25	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	457 - 656	9.7e-24	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	458 - 640	2e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	484 - 694	7.1e-28	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	484 - 696	2.2e-30	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	493 - 657	2.2e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	499 - 695	3.1e-15	TEP-1 second beta-propeller
WD40_WDHD1_1st	PF24817	537 - 701	3e-16	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	538 - 652	3e-07	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	538 - 694	3.7e-30	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	540 - 693	5.2e-10	G protein beta WD-40 repeat protein
WD40	PF00400	574 - 609	2.9e-08	WD domain, G-beta repeat
EIF3I	PF24805	622 - 695	9.5e-09	EIF3I
WD40_Prp19	PF24814	641 - 708	3.1e-06	Prp19 WD40 domain
WD40	PF00400	657 - 694	1.9e-08	WD domain, G-beta repeat
Utp12	PF04003	796 - 897	5.9e-20	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2565
Acc16I	TGCGCA	1 cut(s)	2757
Acc36I	ACCTGC	3 cut(s)	24, 299, 839
AccB1I	GGYRCC	2 cut(s)	1212, 2010
AccB7I	CCANNNNNTGG	1 cut(s)	1307
AccII	CGCG	1 cut(s)	184
AciI	CCGC	8 cut(s)	19, 32, 184, 330, 1283, 1398, 1886, 2000
AclWI	GGATC	7 cut(s)	361, 534, 626, 639, 1807, 2059, 2088
AcoI	YGGCCR	2 cut(s)	436, 562
AcsI	RAATTY	8 cut(s)	267, 509, 576, 1154, 1813, 1964, 2193, 2748
AcuI	CTGAAG	2 cut(s)	2109, 2220
AdeI	CACNNNGTG	1 cut(s)	1531
AfaI	GTAC	9 cut(s)	14, 138, 154, 876, 1899, 2086, 2542, 2581, 2847
AfiI	CCNNNNNNNGG	4 cut(s)	469, 1307, 2204, 2223
AflIII	ACRYGT	2 cut(s)	1914, 2848
AgeI	ACCGGT	1 cut(s)	1215
AhlI	ACTAGT	1 cut(s)	1271
AjnI	CCWGG	3 cut(s)	468, 870, 2547
AjuI	GAANNNNNNNTTGG	2 cut(s)	1294, 1326
Alw21I	GWGCWC	1 cut(s)	1206
Alw26I	GTCTC	4 cut(s)	58, 290, 407, 1569
AlwI	GGATC	7 cut(s)	361, 534, 626, 639, 1807, 2059, 2088
AlwNI	CAGNNNCTG	1 cut(s)	2255
AoxI	GGCC	5 cut(s)	108, 418, 436, 562, 2214
ApeKI	GCWGC	8 cut(s)	81, 173, 176, 1481, 1747, 2588, 2669, 2758
ApoI	RAATTY	8 cut(s)	267, 509, 576, 1154, 1813, 1964, 2193, 2748
AsiGI	ACCGGT	1 cut(s)	1215
Asp700I	GAANNNNTTC	2 cut(s)	1721, 2193
AspLEI	GCGC	1 cut(s)	2758
AspS9I	GGNCC	1 cut(s)	582
AsuC2I	CCSGG	1 cut(s)	88
AsuII	TTCGAA	3 cut(s)	1321, 2504, 2702
AsuNHI	GCTAGC	2 cut(s)	1061, 1114
AvaII	GGWCC	1 cut(s)	582
BaeGI	GKGCMC	2 cut(s)	1215, 2407
BalI	TGGCCA	2 cut(s)	438, 564
BamHI	GGATCC	1 cut(s)	631
BanI	GGYRCC	2 cut(s)	1212, 2010
BanII	GRGCYC	3 cut(s)	1206, 2097, 2379
BbsI	GAAGAC	2 cut(s)	618, 1027
Bbv12I	GWGCWC	1 cut(s)	1206
BbvI	GCAGC	8 cut(s)	93, 160, 163, 1493, 1734, 2600, 2681, 2770
BccI	CCATC	8 cut(s)	218, 248, 447, 713, 958, 1088, 1772, 2392
BceAI	ACGGC	2 cut(s)	94, 155
BciT130I	CCWGG	3 cut(s)	470, 872, 2549
BciVI	GTATCC	1 cut(s)	1702
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	4 cut(s)	58, 290, 407, 1569
BcuI	ACTAGT	1 cut(s)	1271
BfaI	CTAG	8 cut(s)	240, 878, 1062, 1115, 1272, 1940, 2276, 2774
BfmI	CTRYAG	1 cut(s)	1197
BfuAI	ACCTGC	3 cut(s)	24, 299, 839
BfuI	GTATCC	1 cut(s)	1702
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	8 cut(s)	82, 174, 177, 1482, 1748, 2589, 2670, 2759
BlsI	GCNGC	8 cut(s)	83, 175, 178, 1483, 1749, 2590, 2671, 2760
Bme1390I	CCNGG	4 cut(s)	88, 470, 872, 2549
Bme18I	GGWCC	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	7 cut(s)	289, 633, 1026, 1214, 1312, 1474, 2012
BmrFI	CCNGG	4 cut(s)	88, 470, 872, 2549
BmrI	ACTGGG	2 cut(s)	630, 1960
BmsI	GCATC	6 cut(s)	188, 224, 374, 586, 1642, 2716
BmtI	GCTAGC	2 cut(s)	1065, 1118
BmuI	ACTGGG	2 cut(s)	630, 1960
BpiI	GAAGAC	2 cut(s)	618, 1027
BpmI	CTGGAG	2 cut(s)	390, 1014
Bpu10I	CCTNAGC	1 cut(s)	2218
Bpu14I	TTCGAA	3 cut(s)	1321, 2504, 2702
BpuEI	CTTGAG	1 cut(s)	2006
BpuMI	CCSGG	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	1782
BsaI	GGTCTC	2 cut(s)	290, 407
BsaJI	CCNNGG	6 cut(s)	111, 433, 1207, 2014, 2029, 2184
BsaWI	WCCGGW	2 cut(s)	921, 1215
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	4 cut(s)	469, 1307, 2204, 2223
Bse118I	RCCGGY	2 cut(s)	416, 1215
Bse1I	ACTGG	6 cut(s)	625, 1312, 1801, 1955, 2451, 2501
Bse3DI	GCAATG	4 cut(s)	541, 1476, 2664, 2679
Bse8I	GATNNNNATC	1 cut(s)	1782
BseBI	CCWGG	3 cut(s)	470, 872, 2549
BseDI	CCNNGG	6 cut(s)	111, 433, 1207, 2014, 2029, 2184
BseGI	GGATG	3 cut(s)	215, 406, 2008
BseJI	GATNNNNATC	1 cut(s)	1782
BseLI	CCNNNNNNNGG	4 cut(s)	469, 1307, 2204, 2223
BseMI	GCAATG	4 cut(s)	541, 1476, 2664, 2679
BseMII	CTCAG	5 cut(s)	948, 1260, 2337, 2475, 2684
BseNI	ACTGG	6 cut(s)	625, 1312, 1801, 1955, 2451, 2501
BseRI	GAGGAG	4 cut(s)	2333, 2336, 2830, 2833
BseSI	GKGCMC	2 cut(s)	1215, 2407
BseXI	GCAGC	8 cut(s)	93, 160, 163, 1493, 1734, 2600, 2681, 2770
BseYI	CCCAGC	1 cut(s)	537
BsgI	GTGCAG	3 cut(s)	1539, 1669, 2573
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	5 cut(s)	110, 420, 438, 564, 2216
BshNI	GGYRCC	2 cut(s)	1212, 2010
BshTI	ACCGGT	1 cut(s)	1215
BsiHKAI	GWGCWC	1 cut(s)	1206
BsiSI	CCGG	5 cut(s)	87, 107, 417, 922, 1216
BslFI	GGGAC	3 cut(s)	201, 1967, 2004
BslI	CCNNNNNNNGG	4 cut(s)	469, 1307, 2204, 2223
BsmAI	GTCTC	4 cut(s)	58, 290, 407, 1569
BsmFI	GGGAC	3 cut(s)	201, 1967, 2004
BsmI	GAATGC	2 cut(s)	2645, 2761
BsnI	GGCC	5 cut(s)	110, 420, 438, 564, 2216
Bso31I	GGTCTC	2 cut(s)	290, 407
Bsp119I	TTCGAA	3 cut(s)	1321, 2504, 2702
Bsp1286I	GDGCHC	5 cut(s)	1206, 1215, 2097, 2379, 2407
Bsp1407I	TGTACA	1 cut(s)	2540
BspACI	CCGC	8 cut(s)	19, 32, 184, 330, 1283, 1398, 1886, 2000
BspANI	GGCC	5 cut(s)	110, 420, 438, 564, 2216
BspCNI	CTCAG	5 cut(s)	949, 1259, 2338, 2474, 2685
BspFNI	CGCG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	2056
BspLI	GGNNCC	7 cut(s)	289, 633, 1026, 1214, 1312, 1474, 2012
BspMI	ACCTGC	3 cut(s)	24, 299, 839
BspOI	GCTAGC	2 cut(s)	1065, 1118
BspPI	GGATC	7 cut(s)	361, 534, 626, 639, 1807, 2059, 2088
BspQI	GCTCTTC	1 cut(s)	2085
BspT104I	TTCGAA	3 cut(s)	1321, 2504, 2702
BspT107I	GGYRCC	2 cut(s)	1212, 2010
BspTNI	GGTCTC	2 cut(s)	290, 407
BsrDI	GCAATG	4 cut(s)	541, 1476, 2664, 2679
BsrFI	RCCGGY	2 cut(s)	416, 1215
BsrGI	TGTACA	1 cut(s)	2540
BsrI	ACTGG	6 cut(s)	625, 1312, 1801, 1955, 2451, 2501
BssAI	RCCGGY	2 cut(s)	416, 1215
BssECI	CCNNGG	6 cut(s)	111, 433, 1207, 2014, 2029, 2184
BssT1I	CCWWGG	3 cut(s)	111, 1207, 2014
Bst2UI	CCWGG	3 cut(s)	470, 872, 2549
Bst6I	CTCTTC	5 cut(s)	2085, 2106, 2127, 2196, 2610
BstAPI	GCANNNNNTGC	1 cut(s)	547
BstAUI	TGTACA	1 cut(s)	2540
BstBI	TTCGAA	3 cut(s)	1321, 2504, 2702
BstC8I	GCNNGC	6 cut(s)	30, 363, 548, 1063, 1116, 2586
BstDSI	CCRYGG	3 cut(s)	433, 2029, 2184
BstF5I	GGATG	3 cut(s)	215, 406, 2008
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	2758
BstMAI	GTCTC	4 cut(s)	58, 290, 407, 1569
BstNI	CCWGG	3 cut(s)	470, 872, 2549
BstNSI	RCATGY	5 cut(s)	137, 550, 1348, 1918, 2852
BstSCI	CCNGG	4 cut(s)	86, 468, 870, 2547
BstSFI	CTRYAG	1 cut(s)	1197
BstSLI	GKGCMC	2 cut(s)	1215, 2407
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	8 cut(s)	93, 160, 163, 1493, 1734, 2600, 2681, 2770
BstV2I	GAAGAC	2 cut(s)	618, 1027
BstX2I	RGATCY	5 cut(s)	353, 526, 631, 1799, 2051
BstYI	RGATCY	5 cut(s)	353, 526, 631, 1799, 2051
BsuI	GTATCC	1 cut(s)	1702
BsuRI	GGCC	5 cut(s)	110, 420, 438, 564, 2216
BtgI	CCRYGG	3 cut(s)	433, 2029, 2184
BtgZI	GCGATG	2 cut(s)	165, 196
BtsCI	GGATG	3 cut(s)	215, 406, 2008
BtsIMutI	CAGTG	7 cut(s)	598, 618, 1305, 1410, 1464, 1695, 1882
BveI	ACCTGC	3 cut(s)	24, 299, 839
Cac8I	GCNNGC	6 cut(s)	30, 363, 548, 1063, 1116, 2586
CaiI	CAGNNNCTG	1 cut(s)	2255
CciI	TCATGA	1 cut(s)	2056
CfoI	GCGC	1 cut(s)	2758
Cfr10I	RCCGGY	2 cut(s)	416, 1215
Cfr13I	GGNCC	1 cut(s)	582
CseI	GACGC	4 cut(s)	1964, 2279, 2449, 2474
Csp6I	GTAC	9 cut(s)	13, 137, 153, 875, 1898, 2085, 2541, 2580, 2846
CspAI	ACCGGT	1 cut(s)	1215
CviQI	GTAC	9 cut(s)	13, 137, 153, 875, 1898, 2085, 2541, 2580, 2846
DraIII	CACNNNGTG	1 cut(s)	1531
EaeI	YGGCCR	2 cut(s)	436, 562
Eam1104I	CTCTTC	5 cut(s)	2085, 2106, 2127, 2196, 2610
EarI	CTCTTC	5 cut(s)	2085, 2106, 2127, 2196, 2610
EciI	GGCGGA	1 cut(s)	1413
Ecl136II	GAGCTC	1 cut(s)	1204
Eco130I	CCWWGG	3 cut(s)	111, 1207, 2014
Eco24I	GRGCYC	3 cut(s)	1206, 2097, 2379
Eco31I	GGTCTC	2 cut(s)	290, 407
Eco47I	GGWCC	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	1204
Eco57I	CTGAAG	2 cut(s)	2109, 2220
EcoICRI	GAGCTC	1 cut(s)	1204
EcoRII	CCWGG	3 cut(s)	468, 870, 2547
EcoT14I	CCWWGG	3 cut(s)	111, 1207, 2014
EcoT22I	ATGCAT	2 cut(s)	1763, 2164
EcoT38I	GRGCYC	3 cut(s)	1206, 2097, 2379
ErhI	CCWWGG	3 cut(s)	111, 1207, 2014
FalI	AAGNNNNNCTT	2 cut(s)	1417, 1449
FaqI	GGGAC	3 cut(s)	201, 1967, 2004
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	8 cut(s)	82, 174, 177, 1482, 1748, 2589, 2670, 2759
FokI	GGATG	3 cut(s)	202, 413, 2015
FriOI	GRGCYC	3 cut(s)	1206, 2097, 2379
Fsp4HI	GCNGC	8 cut(s)	82, 174, 177, 1482, 1748, 2589, 2670, 2759
FspBI	CTAG	8 cut(s)	240, 878, 1062, 1115, 1272, 1940, 2276, 2774
FspI	TGCGCA	1 cut(s)	2757
GlaI	GCGC	1 cut(s)	2757
GluI	GCNGC	8 cut(s)	82, 174, 177, 1482, 1748, 2589, 2670, 2759
GsaI	CCCAGC	1 cut(s)	541
GsuI	CTGGAG	2 cut(s)	390, 1014
HaeIII	GGCC	5 cut(s)	110, 420, 438, 564, 2216
HapII	CCGG	5 cut(s)	87, 107, 417, 922, 1216
HgaI	GACGC	4 cut(s)	1964, 2279, 2449, 2474
HhaI	GCGC	1 cut(s)	2758
Hin6I	GCGC	1 cut(s)	2756
HinP1I	GCGC	1 cut(s)	2756
HincII	GTYRAC	1 cut(s)	1269
HindII	GTYRAC	1 cut(s)	1269
HindIII	AAGCTT	2 cut(s)	347, 1040
HpaII	CCGG	5 cut(s)	87, 107, 417, 922, 1216
Hpy166II	GTNNAC	2 cut(s)	1269, 1699
Hpy8I	GTNNAC	2 cut(s)	1269, 1699
Hpy99I	CGWCG	2 cut(s)	62, 2076
HpyAV	CCTTC	6 cut(s)	107, 112, 995, 1328, 1687, 2485
HpyCH4IV	ACGT	4 cut(s)	910, 1712, 2071, 2844
HpySE526I	ACGT	4 cut(s)	910, 1712, 2071, 2844
HspAI	GCGC	1 cut(s)	2756
LguI	GCTCTTC	1 cut(s)	2085
LmnI	GCTCC	9 cut(s)	89, 109, 320, 989, 1082, 1209, 1478, 2207, 2677
Lsp1109I	GCAGC	8 cut(s)	93, 160, 163, 1493, 1734, 2600, 2681, 2770
LweI	GCATC	6 cut(s)	188, 224, 374, 586, 1642, 2716
MaeI	CTAG	8 cut(s)	240, 878, 1062, 1115, 1272, 1940, 2276, 2774
MaeII	ACGT	4 cut(s)	910, 1712, 2071, 2844
MflI	RGATCY	5 cut(s)	353, 526, 631, 1799, 2051
MhlI	GDGCHC	5 cut(s)	1206, 1215, 2097, 2379, 2407
MlsI	TGGCCA	2 cut(s)	438, 564
MluNI	TGGCCA	2 cut(s)	438, 564
MlyI	GAGTC	4 cut(s)	734, 1568, 2153, 2779
MmeI	TCCRAC	6 cut(s)	90, 303, 1366, 1659, 2109, 2592
Mox20I	TGGCCA	2 cut(s)	438, 564
Mph1103I	ATGCAT	2 cut(s)	1763, 2164
MroXI	GAANNNNTTC	2 cut(s)	1721, 2193
MscI	TGGCCA	2 cut(s)	438, 564
MseI	TTAA	5 cut(s)	657, 1554, 1979, 2634, 2685
MslI	CAYNNNNRTG	2 cut(s)	1886, 2001
Msp20I	TGGCCA	2 cut(s)	438, 564
MspI	CCGG	5 cut(s)	87, 107, 417, 922, 1216
MspR9I	CCNGG	4 cut(s)	88, 470, 872, 2549
Mva1269I	GAATGC	2 cut(s)	2645, 2761
MvaI	CCWGG	3 cut(s)	470, 872, 2549
MvnI	CGCG	1 cut(s)	184
NciI	CCSGG	1 cut(s)	88
NheI	GCTAGC	2 cut(s)	1061, 1114
NlaIV	GGNNCC	7 cut(s)	289, 633, 1026, 1214, 1312, 1474, 2012
NmuCI	GTSAC	9 cut(s)	202, 325, 451, 616, 1274, 1507, 1739, 1792, 2840
NsbI	TGCGCA	1 cut(s)	2757
NsiI	ATGCAT	2 cut(s)	1763, 2164
NspI	RCATGY	5 cut(s)	137, 550, 1348, 1918, 2852
NspV	TTCGAA	3 cut(s)	1321, 2504, 2702
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	1 cut(s)	2056
PciI	ACATGT	2 cut(s)	1914, 2848
PciSI	GCTCTTC	1 cut(s)	2085
PcsI	WCGNNNNNNNCGW	1 cut(s)	2080
PctI	GAATGC	2 cut(s)	2645, 2761
PdmI	GAANNNNTTC	2 cut(s)	1721, 2193
PflFI	GACNNNGTC	1 cut(s)	1877
PflMI	CCANNNNNTGG	1 cut(s)	1307
PfoI	TCCNGGA	2 cut(s)	86, 468
PinAI	ACCGGT	1 cut(s)	1215
PkrI	GCNGC	8 cut(s)	83, 175, 178, 1483, 1749, 2590, 2671, 2760
PleI	GAGTC	4 cut(s)	733, 1568, 2152, 2778
PpsI	GAGTC	4 cut(s)	733, 1568, 2152, 2778
PscI	ACATGT	2 cut(s)	1914, 2848
PsiI	TTATAA	1 cut(s)	2565
Psp124BI	GAGCTC	1 cut(s)	1206
Psp6I	CCWGG	3 cut(s)	468, 870, 2547
PspFI	CCCAGC	1 cut(s)	537
PspGI	CCWGG	3 cut(s)	468, 870, 2547
PspN4I	GGNNCC	7 cut(s)	289, 633, 1026, 1214, 1312, 1474, 2012
PspPI	GGNCC	1 cut(s)	582
PsrI	GAACNNNNNNTAC	2 cut(s)	2427, 2459
PstNI	CAGNNNCTG	1 cut(s)	2255
PsuI	RGATCY	5 cut(s)	353, 526, 631, 1799, 2051
PsyI	GACNNNGTC	1 cut(s)	1877
RsaI	GTAC	9 cut(s)	14, 138, 154, 876, 1899, 2086, 2542, 2581, 2847
RsaNI	GTAC	9 cut(s)	13, 137, 153, 875, 1898, 2085, 2541, 2580, 2846
RseI	CAYNNNNRTG	2 cut(s)	1886, 2001
SacI	GAGCTC	1 cut(s)	1206
SapI	GCTCTTC	1 cut(s)	2085
SaqAI	TTAA	5 cut(s)	657, 1554, 1979, 2634, 2685
SatI	GCNGC	8 cut(s)	82, 174, 177, 1482, 1748, 2589, 2670, 2759
Sau96I	GGNCC	1 cut(s)	582
SchI	GAGTC	4 cut(s)	734, 1568, 2153, 2779
ScrFI	CCNGG	4 cut(s)	88, 470, 872, 2549
SduI	GDGCHC	5 cut(s)	1206, 1215, 2097, 2379, 2407
SfaNI	GCATC	6 cut(s)	188, 224, 374, 586, 1642, 2716
SfcI	CTRYAG	1 cut(s)	1197
SfuI	TTCGAA	3 cut(s)	1321, 2504, 2702
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	1886, 2001
SmlI	CTYRAG	1 cut(s)	1985
SmoI	CTYRAG	1 cut(s)	1985
SpeI	ACTAGT	1 cut(s)	1271
SphI	GCATGC	1 cut(s)	550
SsiI	CCGC	8 cut(s)	19, 32, 184, 330, 1283, 1398, 1886, 2000
SspMI	CTAG	8 cut(s)	240, 878, 1062, 1115, 1272, 1940, 2276, 2774
SstI	GAGCTC	1 cut(s)	1206
StyD4I	CCNGG	4 cut(s)	86, 468, 870, 2547
StyI	CCWWGG	3 cut(s)	111, 1207, 2014
TaiI	ACGT	4 cut(s)	913, 1715, 2074, 2847
TaqII	GACCGA	1 cut(s)	2076
TatI	WGTACW	1 cut(s)	2540
Tru1I	TTAA	5 cut(s)	657, 1554, 1979, 2634, 2685
Tru9I	TTAA	5 cut(s)	657, 1554, 1979, 2634, 2685
TscAI	CASTG	7 cut(s)	598, 625, 1312, 1410, 1471, 1695, 1882
TseFI	GTSAC	9 cut(s)	202, 325, 451, 616, 1274, 1507, 1739, 1792, 2840
TseI	GCWGC	8 cut(s)	81, 173, 176, 1481, 1747, 2588, 2669, 2758
Tsp45I	GTSAC	9 cut(s)	202, 325, 451, 616, 1274, 1507, 1739, 1792, 2840
TspDTI	ATGAA	7 cut(s)	678, 720, 1137, 1509, 1625, 1631, 2029
TspGWI	ACGGA	4 cut(s)	46, 422, 1002, 2201
TspRI	CASTG	7 cut(s)	598, 625, 1312, 1410, 1471, 1695, 1882
Tth111I	GACNNNGTC	1 cut(s)	1877
Van91I	CCANNNNNTGG	1 cut(s)	1307
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	8 cut(s)	267, 509, 576, 1154, 1813, 1964, 2193, 2748
XbaI	TCTAGA	1 cut(s)	2773
XceI	RCATGY	5 cut(s)	137, 550, 1348, 1918, 2852
XmnI	GAANNNNTTC	2 cut(s)	1721, 2193
XspI	CTAG	8 cut(s)	240, 878, 1062, 1115, 1272, 1940, 2276, 2774
Zsp2I	ATGCAT	2 cut(s)	1763, 2164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.