Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

15095743 .. 15103152

Gene Structure 7410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGGTGAAGTCGTACCTCCGTTACGAGCAGGCGGCGGTCTTCGGGGTCATTTCCTCCGGCGATTCAAACATCACCTACGACAGCTCCGGTAAGCACCTTCTTGCTCCCGCCCTCGAAAAGGTAGGCGTTTGGCACGTACGACAGGGCGTTTGTACCAAAACCCTCACCCCTTCTTCCGCCACCGCCGGAAAACCCATCTCTGTCACCTCCATCGCTTCCTCTCATACTTCTCTGATAGCTGCTGGGTATTCAGATGGTAGTATAAGAATTTGGGATTCTGAGAAAGGGACCTGTGAGACTACACTCAATGGACATAAAAAGGCTGTCACTGCCTTACGGTATGACAAGCTTGGATCTAAGCTTGCTTCTGGAAGCAAAGATGACGACATTATATTATGGGATGTGGTCGGTGAGAGCGGCCTATATCGCCTCCGTGGGCATCGTGATCAAGTTACGGATCTTGTCTTCTTGGATTCTGGAAAGAAACTCGTTAGTTCCTCAAAAGATAAATTGTTGAAAGTATGGGATCTTGATACCCAGCATTGCATGCAGACAATAAGTGGCCACCATAGTGAAATATGGTCTATAGATAGTGATCCAGAAGAAAGATATTTAGTCTCTGGGTCTGCAGACGCGGAGCTTAGATTTTACACAATTAAGCATGACTCGGAAGATGGCCAATCCATCTCTAATGGGAATGGAACTGTAACTGCGGGGAGTGGAGATCTACCGGTTCATACTAAATGGGAAGTTTTGAAGATGTTTGGTGAGTTACCACGGAAAAACGAGGGTAGAGTCGCAACTGTGAGATTCAACAAGTCCGGAAATTTGCTGGCTTGTCAGGTGGCGGGAAAGACAGTAGATATATTCCATGTACTGGATGAGGATGAATCCAAGCGGAAAGCAAAACGCAGGCTTCACCGGAAGAAAGAAAAAAAATCTGCCAAGGGGGCACCTCAGGTGTTTGAAAATGGAGACACAGATCGTGTAGTTGGAGAAGAAGGAAATAGTCCTGCTGTTACAGTCCTTGATGTTTTTAAGCTTCTTCAAACTATTCGAGCGAGCAAAAAGATATGTTCCATCTCATTCTGTCCAAACACTACAAAGAGTTCGATGGCTACACTAGCTTTGTCATTGAACAATAATTTGTTGGAATTTTATTCTATTGAAAGCAATGCAACGAACAAAACACTTTCTGTAGAGCTTCAAGGACACCGATCTGATGTCAGAAGTGTAGCACTTAGCTCAGACAACACACTCTTGATGTCAACTAGTCACAATGCAGTAAAGATTTGGAATCCAAGTACTGGTTCCTGCCTGCGAACTATTGATTCCGGATATGGCATGTGTGGTTTTATCATTCCTAACAGCGAGTATGCACTTGTTGGAACTAAAAGTGGAACAATGGAAATTATTAACATTGGAAGTGGCACTTGCATTGAAGCAGTGGAAGCACATGGTGGCTCTGTCATGTCAATTGCTGCCATTCCTAATGAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTTAAGTTTTGGGAATATGAAGTTAAACAGAAGTCTGCTCAAGATTCCAAGCAGCTAGTGGTGTCAAATGTAAGGACTATGAAGATGAACGATGATGCCCTTGTGGTTGCTGTCAGCCCTGATGCCAAATATATCTTGGTTGCACTATTGGATTGCACAGTGAAGGTGTTCTTTATGGATTCACTTAAGCTTTTCCTTTCCTTGTATGGTCATAAGTTGCCTGTATTATGTATGGATACATCATCTGACGGAGACCTAATAGTGACTGGATCTGCTGACAAAAATTTGAAGATTTGGGGTTTAGATTTTGGTGATTGTCATAAATCCTTATTCGCTCATGAGGACAGTGTAACAGCTGTTCGATTTGTGCAAAACACACATTACATGTTTAGTGCTGGAAAGGACCGCATTGTAAAATATTGGGATGCTGATAAATTTCAGTTGCTTTTAACGCTTGAGGGACACCATGCTGAAGTTTGGTGCCTCGGAATTAGTAACCGTGGGGACTTCATTGTCACGGGATCTCATGACAGATCAATACGTCGCTGGGATCGCACTGAAGAGCCATTTTTTATTGAGGAAGAAGAAGAAAAAAGGCAGTTGGAAATGATTGAGTCTGAACTTGACAATATGATAGAGAGCAGGTATCAAAAGGAAGAAATCCCTGAGGTGGGAGCTGTGGCCTTAGCAGGGAAGAAATCTAAAGAAACAATTACAGCTGCTGATGCAATTATCGATGCAATAGATATGGCAGACGCAGAATTGAAGCGACTTGCGGAGCATGAGGTATACTTGTATTTTTGCCTGATAATAGCTATTATCATGTGCTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

788

Amino Acids

86.8

Weight (kDa)

5.87

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR75_1st	PF23869	10 - 136	3.3e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_THOC3	PF25174	25 - 218	1.4e-29	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	27 - 222	2e-24	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	27 - 134	1.3e-07	MABP1/WDR62 second WD40 domain
Beta-prop_WDR5	PF25175	28 - 102	4.7e-07	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	30 - 217	2.7e-14	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	31 - 219	3.8e-74	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	40 - 135	8.6e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	41 - 182	1e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	42 - 217	4.6e-15	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	44 - 137	2.4e-06	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	61 - 180	8.1e-15	SCAP Beta-propeller
Beta-prop_EML_2	PF23414	62 - 181	5.4e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_Aladin	PF25460	64 - 225	1.3e-07	Aladin seven-bladed propeller
Beta-prop_WDR3_2nd	PF25172	66 - 175	1.4e-14	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	67 - 137	1.6e-09	WDHD1 first WD40 domain
WDR90_beta-prop_4th	PF23342	69 - 128	1.3e-06	WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	74 - 221	7.7e-14	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	75 - 228	1.8e-15	WDR55
Beta-prop_IFT140_1st	PF23383	76 - 135	5.8e-06	IFT140 first beta-propeller
WD40_Prp19	PF24814	77 - 134	1.8e-09	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	78 - 221	1.5e-14	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	96 - 134	5.6e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	101 - 221	1.9e-25	WDR5 beta-propeller domain
EIF3I	PF24805	101 - 186	2.5e-08	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	118 - 224	8.7e-07	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	119 - 223	1.4e-18	Prp19 WD40 domain
WD40_Gbeta	PF25391	123 - 224	4.3e-10	G protein beta WD-40 repeat protein
WD40	PF00400	141 - 176	8.8e-07	WD domain, G-beta repeat
EIF3I	PF24805	144 - 221	1.7e-10	EIF3I
Beta-prop_WDR3_2nd	PF25172	144 - 218	8.3e-14	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	150 - 224	1.1e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	172 - 228	9.3e-08	WDR3 second beta-propeller domain
WD40	PF00400	181 - 217	8e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	262 - 514	1e-15	CDC20/Fizzy WD40 domain
WDR55	PF24796	351 - 524	5.8e-06	WDR55
Beta-prop_WDR5	PF25175	355 - 565	2e-17	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	356 - 515	2.2e-14	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	378 - 609	5.7e-14	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	401 - 651	1.9e-11	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	408 - 699	1.1e-135	WDR3 second beta-propeller domain
PEP5_VPS11_N	PF23341	455 - 719	3e-07	PEP5/VPS11 N-terminal
Beta-prop_THOC3	PF25174	456 - 547	2e-07	THOC3 beta-propeller domain
WD40_Prp19	PF24814	457 - 653	9.3e-23	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	458 - 639	4.5e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	491 - 657	2e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	499 - 696	8.6e-16	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	533 - 694	2.5e-23	THOC3 beta-propeller domain
WDR55	PF24796	537 - 711	6.5e-11	WDR55
Beta-prop_WDR3_1st	PF25173	539 - 694	1.1e-31	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	540 - 693	5e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	545 - 696	4.2e-29	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	555 - 693	1.8e-06	WDR36/Utp21 first beta-propeller
WD40	PF00400	576 - 609	8.4e-08	WD domain, G-beta repeat
Beta-prop_EML	PF23409	584 - 655	4.1e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	594 - 694	1.8e-07	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	614 - 652	6.4e-06	WD domain, G-beta repeat
EIF3I	PF24805	620 - 697	2.3e-10	EIF3I
WD40_Prp19	PF24814	640 - 700	3.2e-07	Prp19 WD40 domain
WD40	PF00400	657 - 694	2.3e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2042
Acc36I	ACCTGC	1 cut(s)	2163
AccB1I	GGYRCC	2 cut(s)	952, 2010
AccB7I	CCANNNNNTGG	2 cut(s)	877, 1307
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	2319
AccII	CGCG	1 cut(s)	635
AccIII	TCCGGA	2 cut(s)	821, 1334
AclWI	GGATC	7 cut(s)	361, 465, 534, 590, 1807, 2059, 2088
AcoI	YGGCCR	2 cut(s)	562, 676
AcsI	RAATTY	5 cut(s)	267, 826, 1154, 1813, 1964
AcuI	CTGAAG	2 cut(s)	2022, 2109
AdeI	CACNNNGTG	1 cut(s)	1460
AfaI	GTAC	5 cut(s)	14, 138, 154, 876, 1306
AfiI	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
AflII	CTTAAG	1 cut(s)	1715
AflIII	ACRYGT	1 cut(s)	1914
AgeI	ACCGGT	1 cut(s)	730
AhlI	ACTAGT	1 cut(s)	1271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1294, 1326
AleI	CACNNNNGTG	1 cut(s)	570
Alw26I	GTCTC	4 cut(s)	290, 622, 969, 1776
AlwI	GGATC	7 cut(s)	361, 465, 534, 590, 1807, 2059, 2088
AlwNI	CAGNNNCTG	1 cut(s)	2252
Aor13HI	TCCGGA	2 cut(s)	821, 1334
AoxI	GGCC	4 cut(s)	418, 562, 676, 2211
ApeKI	GCWGC	4 cut(s)	239, 1481, 1582, 2249
ApoI	RAATTY	5 cut(s)	267, 826, 1154, 1813, 1964
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	1 cut(s)	730
Asp700I	GAANNNNTTC	1 cut(s)	1697
AspS9I	GGNCC	2 cut(s)	288, 1933
AsuHPI	GGTGA	8 cut(s)	16, 64, 157, 196, 422, 779, 911, 1853
AvaII	GGWCC	2 cut(s)	288, 1933
AxyI	CCTNAGG	2 cut(s)	957, 2196
BaeGI	GKGCMC	1 cut(s)	955
BalI	TGGCCA	2 cut(s)	564, 678
BanI	GGYRCC	2 cut(s)	952, 2010
BbsI	GAAGAC	2 cut(s)	31, 457
BbvI	GCAGC	4 cut(s)	226, 1468, 1594, 2236
BccI	CCATC	7 cut(s)	203, 218, 248, 668, 692, 1088, 1108
BciVI	GTATCC	1 cut(s)	1759
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	4 cut(s)	290, 622, 969, 1776
BcuI	ACTAGT	1 cut(s)	1271
BfaI	CTAG	3 cut(s)	1124, 1272, 1586
BfmI	CTRYAG	3 cut(s)	585, 627, 1197
BfrI	CTTAAG	1 cut(s)	1715
BfuAI	ACCTGC	1 cut(s)	2163
BfuI	GTATCC	1 cut(s)	1759
BglI	GCCNNNNNGGC	1 cut(s)	950
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	6 cut(s)	33, 240, 418, 1482, 1583, 2250
BlsI	GCNGC	6 cut(s)	34, 241, 419, 1483, 1584, 2251
BmcAI	AGTACT	1 cut(s)	1306
Bme18I	GGWCC	2 cut(s)	288, 1933
BmgT120I	GGNCC	2 cut(s)	288, 1933
BmiI	GGNNCC	4 cut(s)	289, 954, 1312, 2012
BmsI	GCATC	6 cut(s)	448, 1615, 1642, 1945, 2245, 2257
BpiI	GAAGAC	2 cut(s)	31, 457
Bpu10I	CCTNAGC	1 cut(s)	2215
BpuEI	CTTGAG	2 cut(s)	1554, 2006
Bsa29I	ATCGAT	1 cut(s)	2265
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	1776
BsaJI	CCNNGG	5 cut(s)	433, 776, 945, 2014, 2029
BsaWI	WCCGGW	5 cut(s)	86, 730, 821, 921, 1334
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	3 cut(s)	882, 1312, 1801
Bse21I	CCTNAGG	2 cut(s)	957, 2196
Bse3DI	GCAATG	2 cut(s)	541, 1180
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	2 cut(s)	821, 1334
BseCI	ATCGAT	1 cut(s)	2265
BseDI	CCNNGG	5 cut(s)	433, 776, 945, 2014, 2029
BseGI	GGATG	4 cut(s)	406, 886, 892, 1960
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
BseMI	GCAATG	2 cut(s)	541, 1180
BseMII	CTCAG	4 cut(s)	270, 971, 1260, 2187
BseNI	ACTGG	3 cut(s)	882, 1312, 1801
BseSI	GKGCMC	1 cut(s)	955
BseXI	GCAGC	4 cut(s)	226, 1468, 1594, 2236
BseYI	CCCAGC	3 cut(s)	242, 537, 2076
BsgI	GTGCAG	1 cut(s)	1539
Bsh1236I	CGCG	1 cut(s)	635
BshFI	GGCC	4 cut(s)	420, 564, 678, 2213
BshNI	GGYRCC	2 cut(s)	952, 2010
BshTI	ACCGGT	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	2265
BsiSI	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
BsiWI	CGTACG	1 cut(s)	136
BslFI	GGGAC	3 cut(s)	301, 2004, 2048
BslI	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
BsmAI	GTCTC	4 cut(s)	290, 622, 969, 1776
BsmFI	GGGAC	3 cut(s)	301, 2004, 2048
BsnI	GGCC	4 cut(s)	420, 564, 678, 2213
Bso31I	GGTCTC	1 cut(s)	1776
Bsp1286I	GDGCHC	1 cut(s)	955
Bsp13I	TCCGGA	2 cut(s)	821, 1334
BspANI	GGCC	4 cut(s)	420, 564, 678, 2213
BspCNI	CTCAG	4 cut(s)	271, 970, 1259, 2188
BspDI	ATCGAT	1 cut(s)	2265
BspEI	TCCGGA	2 cut(s)	821, 1334
BspFNI	CGCG	1 cut(s)	635
BspHI	TCATGA	3 cut(s)	1525, 1867, 2056
BspLI	GGNNCC	4 cut(s)	289, 954, 1312, 2012
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	2163
BspPI	GGATC	7 cut(s)	361, 465, 534, 590, 1807, 2059, 2088
BspQI	GCTCTTC	1 cut(s)	2085
BspT107I	GGYRCC	2 cut(s)	952, 2010
BspTI	CTTAAG	1 cut(s)	1715
BspTNI	GGTCTC	1 cut(s)	1776
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	2 cut(s)	541, 1180
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	3 cut(s)	882, 1312, 1801
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	5 cut(s)	433, 776, 945, 2014, 2029
BssNAI	GTATAC	1 cut(s)	2320
BssT1I	CCWWGG	1 cut(s)	945
Bst1107I	GTATAC	1 cut(s)	2320
Bst4CI	ACNGT	8 cut(s)	339, 706, 805, 859, 1024, 1690, 1877, 2030
Bst6I	CTCTTC	1 cut(s)	2085
BstAFI	CTTAAG	1 cut(s)	1715
BstAPI	GCANNNNNTGC	1 cut(s)	547
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	7 cut(s)	30, 363, 548, 834, 914, 1063, 1319
BstDEI	CTNAG	8 cut(s)	279, 357, 641, 957, 1241, 1246, 2196, 2215
BstDSI	CCRYGG	3 cut(s)	433, 776, 2029
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	4 cut(s)	406, 886, 892, 1960
BstFNI	CGCG	1 cut(s)	635
BstMAI	GTCTC	4 cut(s)	290, 622, 969, 1776
BstMWI	GCNNNNNNNGC	9 cut(s)	329, 426, 547, 950, 1124, 1451, 1981, 2082, 2255
BstNSI	RCATGY	3 cut(s)	550, 1348, 1918
BstSFI	CTRYAG	3 cut(s)	585, 627, 1197
BstSLI	GKGCMC	1 cut(s)	955
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	4 cut(s)	226, 1468, 1594, 2236
BstV2I	GAAGAC	2 cut(s)	31, 457
BstX2I	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
BstYI	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
BstZ17I	GTATAC	1 cut(s)	2320
Bsu15I	ATCGAT	1 cut(s)	2265
Bsu36I	CCTNAGG	2 cut(s)	957, 2196
BsuI	GTATCC	1 cut(s)	1759
BsuRI	GGCC	4 cut(s)	420, 564, 678, 2213
BsuTUI	ATCGAT	1 cut(s)	2265
BtgI	CCRYGG	3 cut(s)	433, 776, 2029
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	406, 886, 892, 1960
BtsI	GCAGTG	2 cut(s)	327, 1452
BtsIMutI	CAGTG	5 cut(s)	327, 1452, 1695, 1882, 2085
BveI	ACCTGC	1 cut(s)	2163
Cac8I	GCNNGC	7 cut(s)	30, 363, 548, 834, 914, 1063, 1319
CaiI	CAGNNNCTG	1 cut(s)	2252
CciI	TCATGA	3 cut(s)	1525, 1867, 2056
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	2 cut(s)	288, 1933
ClaI	ATCGAT	1 cut(s)	2265
CseI	GACGC	2 cut(s)	641, 2294
Csp6I	GTAC	5 cut(s)	13, 137, 153, 875, 1305
CspAI	ACCGGT	1 cut(s)	730
CviQI	GTAC	5 cut(s)	13, 137, 153, 875, 1305
DdeI	CTNAG	8 cut(s)	279, 357, 641, 957, 1241, 1246, 2196, 2215
DraIII	CACNNNGTG	1 cut(s)	1460
DrdI	GACNNNNNNGTC	1 cut(s)	2042
DseDI	GACNNNNNNGTC	1 cut(s)	2042
EaeI	YGGCCR	2 cut(s)	562, 676
Eam1104I	CTCTTC	1 cut(s)	2085
EarI	CTCTTC	1 cut(s)	2085
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	945
Eco31I	GGTCTC	1 cut(s)	1776
Eco47I	GGWCC	2 cut(s)	288, 1933
Eco57I	CTGAAG	2 cut(s)	2022, 2109
Eco81I	CCTNAGG	2 cut(s)	957, 2196
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	945
ErhI	CCWWGG	1 cut(s)	945
FalI	AAGNNNNNCTT	4 cut(s)	1417, 1449, 1685, 1717
FaqI	GGGAC	3 cut(s)	301, 2004, 2048
FauI	CCCGC	3 cut(s)	115, 706, 841
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	2319
Fnu4HI	GCNGC	6 cut(s)	33, 240, 418, 1482, 1583, 2250
FokI	GGATG	4 cut(s)	413, 893, 899, 1967
Fsp4HI	GCNGC	6 cut(s)	33, 240, 418, 1482, 1583, 2250
FspBI	CTAG	3 cut(s)	1124, 1272, 1586
GluI	GCNGC	6 cut(s)	33, 240, 418, 1482, 1583, 2250
GsaI	CCCAGC	3 cut(s)	246, 541, 2080
HaeIII	GGCC	4 cut(s)	420, 564, 678, 2213
HapII	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
HgaI	GACGC	2 cut(s)	641, 2294
HincII	GTYRAC	1 cut(s)	1269
HindII	GTYRAC	1 cut(s)	1269
HindIII	AAGCTT	4 cut(s)	347, 359, 1040, 1718
HpaII	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
HphI	GGTGA	8 cut(s)	16, 64, 157, 196, 422, 779, 911, 1853
Hpy166II	GTNNAC	2 cut(s)	1269, 2320
Hpy8I	GTNNAC	2 cut(s)	1269, 2320
Hpy99I	CGWCG	1 cut(s)	2076
HpyAV	CCTTC	4 cut(s)	107, 180, 995, 1687
HpyCH4III	ACNGT	8 cut(s)	339, 706, 805, 859, 1024, 1690, 1877, 2030
HpyCH4IV	ACGT	2 cut(s)	135, 2071
HpyF10VI	GCNNNNNNNGC	9 cut(s)	329, 426, 547, 950, 1124, 1451, 1981, 2082, 2255
HpyF3I	CTNAG	8 cut(s)	279, 357, 641, 957, 1241, 1246, 2196, 2215
HpySE526I	ACGT	2 cut(s)	135, 2071
Kpn2I	TCCGGA	2 cut(s)	821, 1334
Ksp22I	TGATCA	1 cut(s)	445
LguI	GCTCTTC	1 cut(s)	2085
LmnI	GCTCC	5 cut(s)	89, 109, 637, 2204, 2308
Lsp1109I	GCAGC	4 cut(s)	226, 1468, 1594, 2236
LweI	GCATC	6 cut(s)	448, 1615, 1642, 1945, 2245, 2257
MaeI	CTAG	3 cut(s)	1124, 1272, 1586
MaeII	ACGT	2 cut(s)	135, 2071
MbiI	CCGCTC	1 cut(s)	417
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
MhlI	GDGCHC	1 cut(s)	955
MlsI	TGGCCA	2 cut(s)	564, 678
MluNI	TGGCCA	2 cut(s)	564, 678
MlyI	GAGTC	3 cut(s)	659, 804, 2153
MmeI	TCCRAC	4 cut(s)	973, 1131, 1366, 2112
Mox20I	TGGCCA	2 cut(s)	564, 678
MroI	TCCGGA	2 cut(s)	821, 1334
MroXI	GAANNNNTTC	1 cut(s)	1697
MscI	TGGCCA	2 cut(s)	564, 678
MseI	TTAA	7 cut(s)	657, 1038, 1416, 1533, 1554, 1716, 1979
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	2 cut(s)	564, 678
MspA1I	CMGCKG	2 cut(s)	1886, 2249
MspCI	CTTAAG	1 cut(s)	1715
MspI	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
MunI	CAATTG	1 cut(s)	1476
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	9 cut(s)	329, 426, 547, 950, 1124, 1451, 1981, 2082, 2255
NlaIV	GGNNCC	4 cut(s)	289, 954, 1312, 2012
NmuCI	GTSAC	6 cut(s)	202, 325, 1274, 1507, 1792, 2044
NspI	RCATGY	3 cut(s)	550, 1348, 1918
OliI	CACNNNNGTG	1 cut(s)	570
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	3 cut(s)	1525, 1867, 2056
PciI	ACATGT	1 cut(s)	1914
PciSI	GCTCTTC	1 cut(s)	2085
PdmI	GAANNNNTTC	1 cut(s)	1697
PfeI	GAWTC	9 cut(s)	62, 275, 473, 810, 890, 1297, 1331, 1574, 1709
Pfl23II	CGTACG	1 cut(s)	136
PflMI	CCANNNNNTGG	2 cut(s)	877, 1307
PinAI	ACCGGT	1 cut(s)	730
PkrI	GCNGC	6 cut(s)	34, 241, 419, 1483, 1584, 2251
PleI	GAGTC	3 cut(s)	659, 803, 2152
PpsI	GAGTC	3 cut(s)	659, 803, 2152
Ppu21I	YACGTR	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	288
PscI	ACATGT	1 cut(s)	1914
Psp5II	RGGWCCY	1 cut(s)	288
PspFI	CCCAGC	3 cut(s)	242, 537, 2076
PspLI	CGTACG	1 cut(s)	136
PspN4I	GGNNCC	4 cut(s)	289, 954, 1312, 2012
PspPI	GGNCC	2 cut(s)	288, 1933
PspPPI	RGGWCCY	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	1872, 1904
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	2252
PsuI	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
PvuII	CAGCTG	2 cut(s)	1886, 2249
RsaI	GTAC	5 cut(s)	14, 138, 154, 876, 1306
RsaNI	GTAC	5 cut(s)	13, 137, 153, 875, 1305
RseI	CAYNNNNRTG	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	2085
SaqAI	TTAA	7 cut(s)	657, 1038, 1416, 1533, 1554, 1716, 1979
SatI	GCNGC	6 cut(s)	33, 240, 418, 1482, 1583, 2250
Sau96I	GGNCC	2 cut(s)	288, 1933
ScaI	AGTACT	1 cut(s)	1306
SchI	GAGTC	3 cut(s)	659, 804, 2153
SduI	GDGCHC	1 cut(s)	955
SfaNI	GCATC	6 cut(s)	448, 1615, 1642, 1945, 2245, 2257
SfcI	CTRYAG	3 cut(s)	585, 627, 1197
SinI	GGWCC	2 cut(s)	288, 1933
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	3 cut(s)	1569, 1715, 1985
SmoI	CTYRAG	3 cut(s)	1569, 1715, 1985
SpeI	ACTAGT	1 cut(s)	1271
SphI	GCATGC	1 cut(s)	550
SspI	AATATT	1 cut(s)	1949
SspMI	CTAG	3 cut(s)	1124, 1272, 1586
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	8 cut(s)	339, 706, 805, 859, 1024, 1690, 1877, 2030
TaiI	ACGT	2 cut(s)	138, 2074
TaqI	TCGA	5 cut(s)	114, 1057, 1112, 1891, 2265
TatI	WGTACW	2 cut(s)	874, 1304
TauI	GCSGC	2 cut(s)	35, 420
TfiI	GAWTC	9 cut(s)	62, 275, 473, 810, 890, 1297, 1331, 1574, 1709
Tru1I	TTAA	7 cut(s)	657, 1038, 1416, 1533, 1554, 1716, 1979
Tru9I	TTAA	7 cut(s)	657, 1038, 1416, 1533, 1554, 1716, 1979
TscAI	CASTG	5 cut(s)	334, 1452, 1695, 1882, 2092
TseFI	GTSAC	6 cut(s)	202, 325, 1274, 1507, 1792, 2044
TseI	GCWGC	4 cut(s)	239, 1481, 1582, 2249
Tsp45I	GTSAC	6 cut(s)	202, 325, 1274, 1507, 1792, 2044
TspDTI	ATGAA	7 cut(s)	725, 903, 1509, 1563, 1625, 1631, 2029
TspGWI	ACGGA	5 cut(s)	8, 422, 470, 793, 1794
TspRI	CASTG	5 cut(s)	334, 1452, 1695, 1882, 2092
Van91I	CCANNNNNTGG	2 cut(s)	877, 1307
Vha464I	CTTAAG	1 cut(s)	1715
VpaK11BI	GGWCC	2 cut(s)	288, 1933
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	5 cut(s)	267, 826, 1154, 1813, 1964
XceI	RCATGY	3 cut(s)	550, 1348, 1918
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1585, 1663
XmiI	GTMKAC	1 cut(s)	2319
XmnI	GAANNNNTTC	1 cut(s)	1697
XspI	CTAG	3 cut(s)	1124, 1272, 1586
ZrmI	AGTACT	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.