Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037202.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 722

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037202.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

gttacggatcttgtcttcttggattctggaaagaaacttgttagttcctcaaaagataaatttctgaaagtatgggatcttgatacccagcattgcatgcagacaattagtggccaccatagtgaaatctggtctatagatagtgatccagaagaaagatatttagtctctgggtctgcagacgcggagcttagattttacacaattaagcatgactcggaagatggccaatccatctctaatgggaatggaactgtaactgcggggagtggagatccaccggttcatgctaaatgggaagttttgcagatgtttggtgagttaccacggaaaaacaacgagggtagagtcgcaactgtgagattcaacaagtctggaaatttgctggcttgtcaggtggcgggaaagacagtagatatattccatgtactggatgaggatgaatcaaagaggaaagcaaaacgcaggcttcaccggaagaaagaaaaaaaatctgccaagggggcacctcagtccttgatgtttttaagcttcttcaaactattcgagcaagcaaaaagatatgttccatctcgttctgtccaaacactacaaagagttcgatggctacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

204

Amino Acids

23.16

Weight (kDa)

9.39

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccII	CGCG	1 cut(s)	185
AciI	CCGC	3 cut(s)	185, 263, 401
AclWI	GGATC	4 cut(s)	15, 84, 140, 269
AcoI	YGGCCR	2 cut(s)	112, 226
AcsI	RAATTY	2 cut(s)	59, 379
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	367, 538
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	190, 531
AluI	AGCT	2 cut(s)	190, 531
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	4 cut(s)	15, 84, 140, 269
AoxI	GGCC	2 cut(s)	112, 226
ApoI	RAATTY	2 cut(s)	59, 379
AsiGI	ACCGGT	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	329, 464
BaeGI	GKGCMC	1 cut(s)	508
BalI	TGGCCA	2 cut(s)	114, 228
BanI	GGYRCC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	7
BccI	CCATC	4 cut(s)	218, 242, 577, 597
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	613
BfmI	CTRYAG	2 cut(s)	135, 177
BglI	GCCNNNNNGGC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	326, 498
BsaWI	WCCGGW	2 cut(s)	280, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	326, 498
BseGI	GGATG	2 cut(s)	439, 445
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	114, 228
BshNI	GGYRCC	1 cut(s)	505
BshTI	ACCGGT	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	281, 475
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	114, 228
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	7, 76, 145, 274
BspACI	CCGC	3 cut(s)	185, 263, 401
BspANI	GGCC	2 cut(s)	114, 228
BspCNI	CTCAG	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	4 cut(s)	15, 84, 140, 269
BspT107I	GGYRCC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	326, 498
BssMI	GATC	4 cut(s)	7, 76, 145, 274
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	256, 358, 412
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	98, 387, 467, 552
BstDEI	CTNAG	2 cut(s)	191, 510
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	439, 445
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	4 cut(s)	10, 79, 148, 277
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	4 cut(s)	7, 76, 145, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 503
BstNSI	RCATGY	1 cut(s)	100
BstSFI	CTRYAG	2 cut(s)	135, 177
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	7
BstX2I	RGATCY	3 cut(s)	7, 76, 274
BstYI	RGATCY	3 cut(s)	7, 76, 274
BsuRI	GGCC	2 cut(s)	114, 228
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	439, 445
Cac8I	GCNNGC	4 cut(s)	98, 387, 467, 552
Cfr10I	RCCGGY	1 cut(s)	280
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	428
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	4 cut(s)	97, 212, 287, 425
CviJI	RGCY	7 cut(s)	114, 190, 228, 389, 469, 531, 607
CviKI_1	RGCY	7 cut(s)	114, 190, 228, 389, 469, 531, 607
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	2 cut(s)	191, 510
DpnI	GATC	4 cut(s)	9, 78, 147, 276
DpnII	GATC	4 cut(s)	7, 76, 145, 274
EaeI	YGGCCR	2 cut(s)	112, 226
Eco130I	CCWWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	100, 215, 290, 428
FaiI	YATR	9 cut(s)	73, 98, 120, 137, 213, 288, 419, 426, 564
FatI	CATG	4 cut(s)	96, 211, 286, 424
FauI	CCCGC	2 cut(s)	256, 394
FokI	GGATG	2 cut(s)	446, 452
FspBI	CTAG	1 cut(s)	613
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	114, 228
HapII	CCGG	2 cut(s)	281, 475
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	100, 215, 290, 428
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	5 cut(s)	23, 215, 348, 363, 443
HpaII	CCGG	2 cut(s)	281, 475
HphI	GGTGA	2 cut(s)	329, 464
Hpy188I	TCNGA	2 cut(s)	66, 220
Hpy188III	TCNNGA	4 cut(s)	27, 80, 149, 375
HpyCH4III	ACNGT	3 cut(s)	256, 358, 412
HpyCH4V	TGCA	4 cut(s)	96, 100, 179, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 503
HpyF3I	CTNAG	2 cut(s)	191, 510
Hsp92II	CATG	4 cut(s)	100, 215, 290, 428
Kzo9I	GATC	4 cut(s)	7, 76, 145, 274
LmnI	GCTCC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	613
MaeIII	GTNAC	2 cut(s)	256, 321
MalI	GATC	4 cut(s)	9, 78, 147, 276
MboI	GATC	4 cut(s)	7, 76, 145, 274
MboII	GAAGA	5 cut(s)	7, 164, 233, 490, 526
MflI	RGATCY	3 cut(s)	7, 76, 274
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	2 cut(s)	114, 228
MluCI	AATT	4 cut(s)	59, 105, 204, 379
MluNI	TGGCCA	2 cut(s)	114, 228
MlyI	GAGTC	2 cut(s)	209, 357
MnlI	CCTC	5 cut(s)	58, 334, 430, 444, 519
Mox20I	TGGCCA	2 cut(s)	114, 228
MscI	TGGCCA	2 cut(s)	114, 228
MseI	TTAA	2 cut(s)	207, 527
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	2 cut(s)	114, 228
MspI	CCGG	2 cut(s)	281, 475
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	97, 503
NdeII	GATC	4 cut(s)	7, 76, 145, 274
NlaIII	CATG	4 cut(s)	100, 215, 290, 428
NlaIV	GGNNCC	1 cut(s)	507
NspI	RCATGY	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	23, 363, 443
PflMI	CCANNNNNTGG	1 cut(s)	430
PinAI	ACCGGT	1 cut(s)	280
PleI	GAGTC	2 cut(s)	209, 356
PpsI	GAGTC	2 cut(s)	209, 356
PspFI	CCCAGC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	3 cut(s)	7, 76, 274
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	207, 527
Sau3AI	GATC	4 cut(s)	7, 76, 145, 274
SchI	GAGTC	2 cut(s)	209, 357
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	4 cut(s)	192, 399, 511, 533
SfcI	CTRYAG	2 cut(s)	135, 177
SmiMI	CAYNNNNRTG	1 cut(s)	120
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	4 cut(s)	59, 105, 204, 379
SsiI	CCGC	3 cut(s)	185, 263, 401
SspMI	CTAG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	256, 358, 412
TaqI	TCGA	2 cut(s)	546, 601
TasI	AATT	4 cut(s)	59, 105, 204, 379
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	3 cut(s)	23, 363, 443
Tru1I	TTAA	2 cut(s)	207, 527
Tru9I	TTAA	2 cut(s)	207, 527
TspDTI	ATGAA	2 cut(s)	275, 456
TspGWI	ACGGA	2 cut(s)	20, 343
Van91I	CCANNNNNTGG	1 cut(s)	430
XapI	RAATTY	2 cut(s)	59, 379
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.