Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

59215359 .. 59216326

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004420

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGGAGAGGAGTGTTTCGTCAGAGAGAGAGAGAGAGAGAGGCAGAGGAGAGAATCAGAGACCCAGTCCGCGTTGTGCATCAGAGATCCAGATCTTGCGTCGAAGATCCAGTCGCGAAACGGCGTCGTACGTCGTGCGTCGGAGATTCAGTTCTGGCGATCTCGAGCAGAGAGAAAGGAATCATGGTGAAGTCGTACCTGCGATACGAGCAGGGTACCGCCTTCAGCGTCATAGTTTCTGGCAATCAAACATTACCTACGACAGTTCCAGGAAGCACCTTTTTTCACCGGGCCTGGAAAAGGTGGTCGTCTGGAACGTGCGACAAGGCATTTGCGTCAAAACCCTGACTCCTTCTGCTGTTGGATATTCTCCGGGGCCAGTCACCTCCATCGCGGTCTCGCCTTCTTCTTCTCTGATAGCTACCGGGTATGGACATGGTAGCATTAGAATTTGGGACTCCCACAATAAAATATGTGAGACCATATTCAACGGTCATAAGGGGGGCGTTACTGCCTTATGGTACAACAAGATTGGAGATGGGCTGGTTTCTGGAGGCCAAGATAAGGACATTATATTGTGGGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

197

Amino Acids

21.98

Weight (kDa)

9.95

Isoelectric Point (pI)

67.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Gbeta	PF25391	71 - 195	1.6e-08	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	76 - 196	1.9e-14	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	85 - 195	2.6e-08	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	90 - 195	1.6e-10	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	91 - 196	3.5e-10	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	91 - 195	2.3e-09	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	93 - 196	4.2e-28	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	102 - 195	1.1e-06	WDR36/Utp21 first beta-propeller
Beta-prop_VPS8	PF23410	104 - 169	6.7e-07	Vps8 beta-propeller
WD40	PF00400	122 - 153	3.7e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	125 - 196	4e-09	THOC3 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	128 - 195	4.6e-06	IFT140 first beta-propeller
Beta-prop_SCAP	PF24017	137 - 196	4e-06	SCAP Beta-propeller
WD40	PF00400	159 - 195	6.2e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	3 cut(s)	73, 117, 395
AciI	CCGC	3 cut(s)	71, 220, 395
AclWI	GGATC	2 cut(s)	82, 102
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	4 cut(s)	131, 198, 218, 524
AfiI	CCNNNNNNNGG	2 cut(s)	301, 565
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	269, 294
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw26I	GTCTC	3 cut(s)	55, 403, 473
AlwI	GGATC	2 cut(s)	82, 102
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	292, 377, 556
ApoI	RAATTY	1 cut(s)	450
ArsI	GACNNNNNNTTYG	4 cut(s)	97, 129, 315, 347
Asp718I	GGTACC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	292, 377
AsuC2I	CCSGG	3 cut(s)	291, 375, 427
AsuHPI	GGTGA	3 cut(s)	200, 279, 376
AvaI	CYCGRG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	216
BccI	CCATC	2 cut(s)	398, 533
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	2 cut(s)	271, 296
BcnI	CCSGG	3 cut(s)	291, 375, 427
BcoDI	GTCTC	3 cut(s)	55, 403, 473
BfuAI	ACCTGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	93
Bme1390I	CCNGG	5 cut(s)	271, 291, 296, 375, 427
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	292, 377
BmiI	GGNNCC	2 cut(s)	218, 378
BmrFI	CCNGG	5 cut(s)	271, 291, 296, 375, 427
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	573
BpuMI	CCSGG	3 cut(s)	291, 375, 427
BsaBI	GATNNNNATC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	3 cut(s)	55, 403, 473
BsaJI	CCNNGG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 334, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 565
Bse1I	ACTGG	3 cut(s)	66, 111, 380
Bse8I	GATNNNNATC	1 cut(s)	92
BseBI	CCWGG	2 cut(s)	271, 296
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	301, 565
BseNI	ACTGG	3 cut(s)	66, 111, 380
BseRI	GAGGAG	2 cut(s)	25, 63
Bsh1236I	CGCG	3 cut(s)	73, 117, 395
BshFI	GGCC	3 cut(s)	294, 379, 558
BshNI	GGYRCC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	3 cut(s)	290, 374, 426
BsiWI	CGTACG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	301, 565
BsmAI	GTCTC	3 cut(s)	55, 403, 473
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	3 cut(s)	294, 379, 558
Bso31I	GGTCTC	3 cut(s)	55, 403, 473
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	87, 93, 107, 160
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	3 cut(s)	71, 220, 395
BspANI	GGCC	3 cut(s)	294, 379, 558
BspFNI	CGCG	3 cut(s)	73, 117, 395
BspLI	GGNNCC	2 cut(s)	218, 378
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	82, 102
BspT107I	GGYRCC	1 cut(s)	216
BspTNI	GGTCTC	3 cut(s)	55, 403, 473
BsrI	ACTGG	3 cut(s)	66, 111, 380
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	4 cut(s)	87, 93, 107, 160
BssNI	GRCGYC	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	271, 296
Bst4CI	ACNGT	2 cut(s)	266, 494
BstACI	GRCGYC	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	3 cut(s)	73, 117, 395
BstKTI	GATC	4 cut(s)	90, 96, 110, 163
BstMAI	GTCTC	3 cut(s)	55, 403, 473
BstMBI	GATC	4 cut(s)	87, 93, 107, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	2 cut(s)	271, 296
BstSCI	CCNGG	5 cut(s)	269, 289, 294, 373, 425
BstUI	CGCG	3 cut(s)	73, 117, 395
BstX2I	RGATCY	3 cut(s)	87, 93, 107
BstYI	RGATCY	3 cut(s)	87, 93, 107
BsuRI	GGCC	3 cut(s)	294, 379, 558
BtgZI	GCGATG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	589
BtuMI	TCGCGA	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	292, 377
CseI	GACGC	5 cut(s)	89, 114, 128, 218, 325
Csp6I	GTAC	4 cut(s)	130, 197, 217, 523
CviAII	CATG	2 cut(s)	185, 437
CviJI	RGCY	5 cut(s)	294, 379, 422, 544, 558
CviKI_1	RGCY	5 cut(s)	294, 379, 422, 544, 558
CviQI	GTAC	4 cut(s)	130, 197, 217, 523
DpnI	GATC	4 cut(s)	89, 95, 109, 162
DpnII	GATC	4 cut(s)	87, 93, 107, 160
Eco31I	GGTCTC	3 cut(s)	55, 403, 473
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	269, 294
FaeI	CATG	2 cut(s)	188, 440
FaiI	YATR	9 cut(s)	186, 234, 432, 438, 475, 485, 498, 520, 575
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	2 cut(s)	184, 436
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	3 cut(s)	294, 379, 558
HapII	CCGG	3 cut(s)	290, 374, 426
HgaI	GACGC	5 cut(s)	89, 114, 128, 218, 325
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	188, 440
HinfI	GANTC	5 cut(s)	55, 147, 181, 349, 458
HpaII	CCGG	3 cut(s)	290, 374, 426
HphI	GGTGA	3 cut(s)	200, 279, 376
Hpy188I	TCNGA	5 cut(s)	25, 60, 85, 144, 417
Hpy188III	TCNNGA	5 cut(s)	91, 116, 164, 313, 552
Hpy99I	CGWCG	4 cut(s)	105, 130, 137, 144
HpyAV	CCTTC	3 cut(s)	233, 363, 414
HpyCH4III	ACNGT	2 cut(s)	266, 494
HpyCH4IV	ACGT	2 cut(s)	132, 318
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpySE526I	ACGT	2 cut(s)	132, 318
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	188, 440
KpnI	GGTACC	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	87, 93, 107, 160
LweI	GCATC	1 cut(s)	89
MaeII	ACGT	2 cut(s)	132, 318
MaeIII	GTNAC	2 cut(s)	382, 508
MalI	GATC	4 cut(s)	89, 95, 109, 162
MboI	GATC	4 cut(s)	87, 93, 107, 160
MboII	GAAGA	3 cut(s)	117, 399, 402
MflI	RGATCY	3 cut(s)	87, 93, 107
MluCI	AATT	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	343, 452
MmeI	TCCRAC	2 cut(s)	122, 343
MnlI	CCTC	5 cut(s)	3, 35, 41, 397, 548
MspI	CCGG	3 cut(s)	290, 374, 426
MspR9I	CCNGG	5 cut(s)	271, 291, 296, 375, 427
MvaI	CCWGG	2 cut(s)	271, 296
MvnI	CGCG	3 cut(s)	73, 117, 395
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	3 cut(s)	291, 375, 427
NdeII	GATC	4 cut(s)	87, 93, 107, 160
NlaIII	CATG	2 cut(s)	188, 440
NlaIV	GGNNCC	2 cut(s)	218, 378
NmuCI	GTSAC	1 cut(s)	382
NruI	TCGCGA	1 cut(s)	117
PaeR7I	CTCGAG	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	55, 147, 181
Pfl23II	CGTACG	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	269
PleI	GAGTC	2 cut(s)	343, 452
PpsI	GAGTC	2 cut(s)	343, 452
Psp6I	CCWGG	2 cut(s)	269, 294
PspGI	CCWGG	2 cut(s)	269, 294
PspLI	CGTACG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	218, 378
PspPI	GGNCC	2 cut(s)	292, 377
PsuI	RGATCY	3 cut(s)	87, 93, 107
PsyI	GACNNNGTC	1 cut(s)	66
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	4 cut(s)	131, 198, 218, 524
RsaNI	GTAC	4 cut(s)	130, 197, 217, 523
Sau3AI	GATC	4 cut(s)	87, 93, 107, 160
Sau96I	GGNCC	2 cut(s)	292, 377
SchI	GAGTC	2 cut(s)	343, 452
ScrFI	CCNGG	5 cut(s)	271, 291, 296, 375, 427
SetI	ASST	8 cut(s)	135, 202, 260, 282, 306, 321, 389, 424
SfaNI	GCATC	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	3 cut(s)	71, 220, 395
StyD4I	CCNGG	5 cut(s)	269, 289, 294, 373, 425
TaaI	ACNGT	2 cut(s)	266, 494
TaiI	ACGT	2 cut(s)	135, 321
TaqI	TCGA	2 cut(s)	103, 165
TasI	AATT	1 cut(s)	450
TfiI	GAWTC	3 cut(s)	55, 147, 181
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	450
XhoI	CTCGAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.