Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

10550234 .. 10553274

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTACGTGGCTCTGTTGAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGAAGTCAAACAAGATTCTAAGCGCCTGCTGGTGTCAAATGTAAGAATGAAGAAGATGGATACTGATGTTCGTGTGGTTTCTGTCAGCCCTGATGCCAAACATCTTTTGGTGGCTTTGGATACCACACTAAAGGTGTTCTATATGGATTCACTCAAACTTTTCCTAACCTTATATGGTCACAAGCTGCCAGTGCTATGTCTGGATGTCTCATCCGACGGAGATCTGATAGTGACTGGATCTGAAGACAAAAATGTGAAGATTTGGAGGCTAGATTTTGGTGACTGCCACAAATCAATGTTTGATCATAAGAGCAGTGTTCAGCGAGTACAATTTGTGCCAAATACCCATTACTTCGTCAGTGTTGGGCAAGATAAGCAAGTAAACTACTTGGTTGCTGATAAATTTGAGTTGCTTTTAGCTATGAAGGGACACCATGAGGGTGTTTGTTGCCTTGCTATTAGTAATTACCATGGTAATTTCTTTGTCACGGATCTCACGATCGATCAATTCGCCGCTGGGATCGTACTGATGAGCCATTTTTTCTTGAGGAAGAGAGAGAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

220

Amino Acids

25.02

Weight (kDa)

7.72

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	4 - 195	2.3e-71	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	5 - 195	2.4e-13	CDC20/Fizzy WD40 domain
WDR55	PF24796	6 - 120	3.2e-08	WDR55
WDR90_beta-prop_4th	PF23342	8 - 137	2.8e-06	WDR90, 4th beta-propeller
Beta-prop_EML_2	PF23414	9 - 165	6.6e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	15 - 186	3.7e-11	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	16 - 166	1.4e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	19 - 165	4.1e-07	WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	46 - 155	1.1e-07	WDR90/POC16, second beta-propeller
Beta-prop_THOC3	PF25174	47 - 160	3.7e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	47 - 188	4.6e-19	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	50 - 187	1.6e-13	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	50 - 167	1.2e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR5	PF25175	52 - 194	7.4e-21	WDR5 beta-propeller domain
Beta-prop_IFT122_1st	PF23381	52 - 154	1.1e-08	IFT122 first beta-propeller
WD40_Gbeta	PF25391	67 - 184	9.5e-10	G protein beta WD-40 repeat protein
EIF3I	PF24805	69 - 156	2.9e-10	EIF3I
WD40_Prp19	PF24814	72 - 183	6e-15	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	72 - 186	3e-06	Echinoderm microtubule-associated protein second beta-propeller
NBCH_WD40	PF20426	75 - 183	4.1e-07	Neurobeachin beta propeller domain
WD40	PF00400	86 - 120	3.4e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	87 - 161	5.5e-07	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	96 - 195	2.3e-07	MABP1/WDR62 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	609
AclWI	GGATC	3 cut(s)	340, 594, 623
AcsI	RAATTY	2 cut(s)	33, 497
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	3 cut(s)	6, 423, 621
AluBI	AGCT	3 cut(s)	66, 280, 515
AluI	AGCT	3 cut(s)	66, 280, 515
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	3 cut(s)	340, 594, 623
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	33, 497
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	2 cut(s)	65, 145
BciVI	GTATCC	2 cut(s)	148, 208
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	121
BfuI	GTATCC	2 cut(s)	148, 208
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	2 cut(s)	281, 609
BlsI	GCNGC	2 cut(s)	282, 610
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	565
Bse1I	ACTGG	2 cut(s)	284, 334
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	2 cut(s)	304, 305
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	284, 334
BseXI	GCAGC	1 cut(s)	267
BseYI	CCCAGC	1 cut(s)	611
Bsh1285I	CGRYCG	1 cut(s)	597
BshVI	ATCGAT	1 cut(s)	597
BsiEI	CGRYCG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	537
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	537
Bsp143I	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	597
BspPI	GGATC	3 cut(s)	340, 594, 623
BsrI	ACTGG	2 cut(s)	284, 334
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
BssT1I	CCWWGG	1 cut(s)	565
Bst6I	CTCTTC	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	67, 114
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	2 cut(s)	304, 305
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	7 cut(s)	319, 335, 400, 589, 597, 601, 618
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 469
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	316, 332, 586
BstYI	RGATCY	3 cut(s)	316, 332, 586
Bsu15I	ATCGAT	1 cut(s)	597
BsuI	GTATCC	2 cut(s)	148, 208
BsuTUI	ATCGAT	1 cut(s)	597
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	304, 305
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	3 cut(s)	291, 415, 460
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	5, 422, 620
CviAII	CATG	2 cut(s)	530, 566
CviJI	RGCY	8 cut(s)	12, 66, 183, 209, 280, 364, 515, 630
CviKI_1	RGCY	8 cut(s)	12, 66, 183, 209, 280, 364, 515, 630
CviQI	GTAC	3 cut(s)	5, 422, 620
DdeI	CTNAG	2 cut(s)	67, 114
DpnI	GATC	7 cut(s)	318, 334, 399, 588, 596, 600, 617
DpnII	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	2 cut(s)	533, 569
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	2 cut(s)	529, 565
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	281, 609
FokI	GGATG	2 cut(s)	292, 311
Fsp4HI	GCNGC	2 cut(s)	281, 609
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	281, 609
GsaI	CCCAGC	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	121
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	533, 569
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	20, 110, 242
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	4 cut(s)	70, 310, 321, 337
Hpy188III	TCNNGA	3 cut(s)	296, 592, 640
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 469
HpyF3I	CTNAG	2 cut(s)	67, 114
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	533, 569
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
LpnPI	CCDG	9 cut(s)	45, 73, 110, 134, 198, 281, 297, 315, 597
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	5 cut(s)	55, 272, 325, 374, 580
MalI	GATC	7 cut(s)	318, 334, 399, 588, 596, 600, 617
MboI	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
MboII	GAAGA	5 cut(s)	157, 160, 350, 364, 658
MflI	RGATCY	3 cut(s)	316, 332, 586
MluCI	AATT	6 cut(s)	33, 425, 497, 559, 571, 602
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	3 cut(s)	354, 526, 636
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	611
MwoI	GCNNNNNNNGC	2 cut(s)	286, 469
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
NlaIII	CATG	2 cut(s)	533, 569
NmuCI	GTSAC	5 cut(s)	55, 272, 325, 374, 580
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	110, 242
PkrI	GCNGC	2 cut(s)	282, 610
Ple19I	CGATCG	1 cut(s)	597
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	611
PsuI	RGATCY	3 cut(s)	316, 332, 586
PvuI	CGATCG	1 cut(s)	597
RsaI	GTAC	3 cut(s)	6, 423, 621
RsaNI	GTAC	3 cut(s)	5, 422, 620
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	281, 609
Sau3AI	GATC	7 cut(s)	316, 332, 397, 586, 594, 598, 615
SchI	GAGTC	1 cut(s)	29
SetI	ASST	6 cut(s)	10, 68, 231, 266, 282, 517
SfaNI	GCATC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
Sse9I	AATT	6 cut(s)	33, 425, 497, 559, 571, 602
SsiI	CCGC	1 cut(s)	609
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	565
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	597
TasI	AATT	6 cut(s)	33, 425, 497, 559, 571, 602
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	2 cut(s)	110, 242
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	3 cut(s)	291, 415, 460
TseFI	GTSAC	5 cut(s)	55, 272, 325, 374, 580
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	5 cut(s)	55, 272, 325, 374, 580
TspDTI	ATGAA	4 cut(s)	57, 111, 158, 533
TspGWI	ACGGA	2 cut(s)	327, 599
TspRI	CASTG	3 cut(s)	291, 415, 460
XapI	RAATTY	2 cut(s)	33, 497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.