Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

50005405 .. 50012456

Gene Structure 7052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG369600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGGTGAAGTCGTACTTGCGATACGAGCAGGGTGCCGCCTTCGGCGTGATAGTTTCTGGCAATTCAAACATCGCCTACGACAGTTCCGGGAAGCACATTTTTGCCCCGGGCCTGGAAAAGGTGGGCGTGTGGAACGTGCGACAAGGCATTTGCATCAAAACCTTAACTCCTTGTGCTGATGGATATTCGCCGCCAGTCACCTCCATCGCAGTCTCGCCTTCTTCTTCTTCTTCTTCTCTGATAGCCGCTGGGTATGGAGATGGGAGCATTAGAATTTGGGACTCTCAGAATAAAATTTGTGAGACCACATTCTACGGTCATACGGGGGCCGTTAGTGTCTTACGGTACAACAAGATTGGAGATAGGCTGGTTTCTGGTGGCCAAGATAAGGACATTATATTGTGGGATGTGGAGAGGGGCGAGGGCATCTATCGCCTTCGCGGGCATGGGAATCAGGTCACTGATCTCGTCTTCTTGGACTGTTGTAAGAAACTCGTTAGTTCCTCAAAAGACAAATTTTTGAAGGTCTGGGATCTCGAAACCCCCCATTGCATGCAGACAATAAGTGACCACCATAGTGAAATTTGGTCCATAGATATCGATCCCGAAGAAAGATATTTGGTCTCTGGCTCTGCTGACTTGGAACTTAGGGTTTACACAATTAAGCATGACCTTAAAGCTTGCCAATCCGCTTCTAATGGAACAGAAATTGCAGACTCTGGAGATCCATCCCTTCATAATAAATGGCAAGTTTTGAAGCTGTTTGGTGAATATCAGCGAAAAAGCAAGAACAGAGTTGCAACTGTGAGATTCAACAAGTCTGGAAATTTGCTGGCATGTCAAGAGGCAGGAAAGGCGGTACATATATTCAACGTACTGGATGAGGCTGAATCTGCCCGTAAAGCAAACCGCAGGATTCGCCGGATCAAAAAGAAAAAGTCTGCCCAAGGGGAAGCTGAGGTGATGAAGGACGATGGAGCTGGAGAAGAGGGAAAGAGGCACGGGGTCATGTTCTCTGATGTTTTTCAACTTTTCCAAACTATCCGACCTGGCAAAAAGATATGTTCCATCTCTTTTTGTCCAAACCCTCCCAAGACTTCCCTAGCCACAATAGCTTTGTCTCTGAGCGATAATCTATGCGTGTTTTATTCTCTTGAGAGCGAAGCAACAAAACAAACACGCGCTATAGACCTCCACGGCCACCGATCATCTGTCACAAGTGTAGCGCTTAGCTCAGACAACACAGTTTTGATGTCAACCAGTCATAATGCAGCAAAGATCTGGAATCCAACCAATGGTTACTGCCTTGGAACTATTGACACAGGATTCGCCATGTGTGCTTTTATCCTTCCTTCTTGCAATAACAAGTTTGCACTTGTTGGAACCAAGGGTGGAACAATGGAAATTATTGACGTTGGGAGTGCAACTGTCACTGAAGTAGTAGAAGCACATGGTGGCTCTGTTCAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGGAGTCAAAGAAGATTCTAAGCGCCTGCTAGTGTCAAATGTAAGAATGAAGGAGATGGATACTGATGTTCGTGTGGTTTCTATCAGTCCTGATGCCAAATATCTTTTGGTGGCGTTGGATACCATAGTAAAGGTATTCTATATGGATTCACTCAAACTTTTCGTCACCTTATATGGTCACAAGCTGCCAGTTCTATGTCTCGATGTCTCATCCGATGGAGAGTTGATAGTGACTGGATCTCAAGACAAAAATGTGAAGATTTGGGGGCTAGATTTTGGTGACTGCCACAAATCAATGTTTGATCATCAGAGCAGCGTTCAGCAAGTACAATTTGTGCCAAATACCCATTACTTTGTTAGTGTTGGGGATGATAAGCAAGTAAACTACTGGGATGCTGATAAATTTGAGTTGCTTTTAACTATGAAGGGACACCATGAGGGTGTTTGTTGCCTCGCTATTAGTAACCGTGGTGATTTCTTTGTCACGGGATCTCATGATCGCTCAATTCGCCGCTGGGATCGTACTGATGAGCCATTTTTCCTTGAGGAAGAGAGGGAAAAACGGGAGTTGGAAAAGATGTACGAGTCTGACTTCAAGGATGAATATGAGAACAATTTTGCACTCAAGGAAAAGATCCCTGCAGAGGGAGCTGTGGCTTTTGCTGGGAAGAAAACCAAAGAAACAATTTCTTTGACCGACTCAATTGTTGCTAAACTAGAAATAGCATGGGAAGAATCAAAGCGACGAGCCAATTATGAGGCGGAAAAAGTCAGTGGAAAGCTGGTTGCTGAGTTTCAACCAAATCCTTTTATGCTAGGGCTGTCTCCTCCTGATTATTTTCTGCATGAACTTTTGAAGGTTAAGACAAGCGATTTGGAGTCGATGCTATTGGGGCTACCCTTCTCGGATGCCTTGAAGATTTTGTCTTTCTGCAAGGATGTTGATCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACATTGCTGCTGCAGATAATTTGTAATCAATTGATTTCCACTCCAGCTGTAAAACCAATATTGACCGGTTTAAAAGAGGTTCTTTATTCCAACTTAAAGGCAAAGAAGGATATCATTGGTTACAACCTTGCAGCAATGACTCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGATGCCATCTCCAAGCGTGGTGTAGGTGCAAGTTGGTATGGAAAGACAGAAGAAGGTAAATGCAAAAAAGTTCGAACATGTGAACCCACGCCTGGCATGCATCGACACAGTTGGTTACAGCCCTGCAGCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

949

Amino Acids

105.47

Weight (kDa)

7.11

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	19 - 188	2.8e-11	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	23 - 222	4.4e-26	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	25 - 104	8.2e-07	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	29 - 224	1e-20	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	32 - 221	5.8e-67	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	41 - 177	3.5e-11	WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	41 - 213	2.4e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	41 - 182	9.3e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	63 - 178	4.5e-13	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	65 - 278	4.3e-14	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	66 - 234	1.1e-14	WDR55
WD40_MABP1-WDR62_2nd	PF24782	78 - 179	3.9e-08	MABP1/WDR62 second WD40 domain
Beta-prop_IFT140_1st	PF23383	79 - 138	4.8e-06	IFT140 first beta-propeller
Beta-prop_SCAP	PF24017	81 - 181	6.5e-11	SCAP Beta-propeller
EIF3I	PF24805	105 - 189	4.4e-10	EIF3I
WD40_Gbeta	PF25391	106 - 225	2.8e-12	G protein beta WD-40 repeat protein
Beta-prop_Aladin	PF25460	110 - 241	8.9e-06	Aladin seven-bladed propeller
Beta-prop_WDR41	PF25178	118 - 225	4.5e-09	WDR41
WD40_Prp19	PF24814	120 - 229	2.2e-19	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	122 - 224	9.1e-08	TEP-1 second beta-propeller
EIF3I	PF24805	146 - 223	5.7e-08	EIF3I
WD40_WDHD1_1st	PF24817	152 - 224	6.4e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	174 - 288	3.9e-07	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	261 - 512	3.8e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	353 - 552	8.3e-14	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	371 - 602	5.5e-15	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	375 - 630	1e-27	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	405 - 692	1.6e-111	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	447 - 634	1.9e-12	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	454 - 645	5e-23	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	454 - 569	2.6e-07	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	454 - 686	2e-22	CDC20/Fizzy WD40 domain
WDR55	PF24796	462 - 687	3.7e-15	WDR55
Beta-prop_EML_2	PF23414	490 - 650	1.6e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	497 - 689	2.2e-15	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	530 - 686	1.3e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	530 - 687	5.5e-28	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	533 - 693	1.3e-17	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	534 - 689	1.8e-30	WDR5 beta-propeller domain
Beta-prop_IFT122_1st	PF23381	538 - 637	4.4e-07	IFT122 first beta-propeller
WD40_Gbeta	PF25391	547 - 688	1.5e-11	G protein beta WD-40 repeat protein
EIF3I	PF24805	551 - 633	9.7e-09	EIF3I
WD40	PF00400	568 - 602	1e-08	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	569 - 647	4.8e-06	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	578 - 686	2.3e-09	MABP1/WDR62 first WD40 domain
EIF3I	PF24805	615 - 688	2.2e-06	EIF3I
Beta-prop_THOC3	PF25174	616 - 687	2.3e-11	THOC3 beta-propeller domain
WD40_Prp19	PF24814	631 - 692	1.2e-07	Prp19 WD40 domain
WD40	PF00400	650 - 687	1.3e-08	WD domain, G-beta repeat
Utp12	PF04003	793 - 893	2.8e-15	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	1295
AccII	CGCG	2 cut(s)	441, 1182
AciI	CCGC	9 cut(s)	36, 191, 246, 441, 690, 857, 910, 2053, 2303
AclWI	GGATC	8 cut(s)	540, 596, 719, 932, 1786, 2038, 2067, 2170
AcoI	YGGCCR	2 cut(s)	379, 1198
AcsI	RAATTY	8 cut(s)	273, 294, 515, 582, 826, 1479, 1943, 2507
AcuI	CTGAAG	1 cut(s)	1455
AdeI	CACNNNGTG	1 cut(s)	1454
AfaI	GTAC	7 cut(s)	14, 347, 861, 876, 1869, 2065, 2123
AfeI	AGCGCT	1 cut(s)	1227
AfiI	CCNNNNNNNGG	7 cut(s)	112, 118, 388, 1295, 2185, 2186, 2804
AflIII	ACRYGT	1 cut(s)	2789
AgeI	ACCGGT	1 cut(s)	2591
AjnI	CCWGG	4 cut(s)	111, 1048, 2516, 2803
AleI	CACNNNNGTG	1 cut(s)	576
Alw26I	GTCTC	7 cut(s)	217, 296, 628, 1125, 1745, 1753, 2370
AlwI	GGATC	8 cut(s)	540, 596, 719, 932, 1786, 2038, 2067, 2170
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	106
Aor51HI	AGCGCT	1 cut(s)	1227
AoxI	GGCC	4 cut(s)	109, 327, 379, 1198
ApeKI	GCWGC	7 cut(s)	1271, 1726, 1854, 2533, 2536, 2657, 2838
ApoI	RAATTY	8 cut(s)	273, 294, 515, 582, 826, 1479, 1943, 2507
ArsI	GACNNNNNNTTYG	8 cut(s)	132, 164, 1310, 1342, 1689, 1721, 2398, 2430
AsiGI	ACCGGT	1 cut(s)	2591
AspLEI	GCGC	3 cut(s)	1184, 1228, 1566
AspS9I	GGNCC	3 cut(s)	109, 327, 588
AsuC2I	CCSGG	3 cut(s)	88, 107, 108
AsuHPI	GGTGA	7 cut(s)	16, 190, 779, 973, 1699, 1832, 2024
AsuII	TTCGAA	1 cut(s)	2785
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	588
BaeI	ACNNNNGTAYC	4 cut(s)	1593, 1626, 1653, 1686
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	463
BbvCI	CCTCAGC	1 cut(s)	957
BbvI	GCAGC	6 cut(s)	1283, 1713, 1866, 2520, 2523, 2669
BceAI	ACGGC	2 cut(s)	314, 1213
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	4 cut(s)	113, 1050, 2518, 2805
BciVI	GTATCC	2 cut(s)	1594, 1654
BclI	TGATCA	1 cut(s)	1843
BcnI	CCSGG	3 cut(s)	88, 107, 108
BcoDI	GTCTC	7 cut(s)	217, 296, 628, 1125, 1745, 1753, 2370
BfaI	CTAG	5 cut(s)	1103, 1571, 1811, 2258, 2357
BfmI	CTRYAG	4 cut(s)	1185, 2181, 2537, 2836
BfoI	RGCGCY	2 cut(s)	1229, 1567
BfuI	GTATCC	2 cut(s)	1594, 1654
BglII	AGATCT	1 cut(s)	1278
BlpI	GCTNAGC	1 cut(s)	1229
Bme1390I	CCNGG	7 cut(s)	88, 107, 108, 113, 1050, 2518, 2805
Bme18I	GGWCC	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	109, 327, 588
BmiI	GGNNCC	3 cut(s)	34, 328, 1384
BmrFI	CCNGG	7 cut(s)	88, 107, 108, 113, 1050, 2518, 2805
BmrI	ACTGGG	1 cut(s)	1939
BmsI	GCATC	8 cut(s)	162, 435, 1624, 1924, 2415, 2440, 2704, 2821
BmuI	ACTGGG	1 cut(s)	1939
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	3 cut(s)	741, 1002, 2553
Bpu10I	CCTNAGC	1 cut(s)	957
Bpu1102I	GCTNAGC	1 cut(s)	1229
Bpu14I	TTCGAA	1 cut(s)	2785
BpuEI	CTTGAG	4 cut(s)	1175, 1767, 2105, 2150
BpuMI	CCSGG	3 cut(s)	88, 107, 108
Bsa29I	ATCGAT	1 cut(s)	600
BsaBI	GATNNNNATC	2 cut(s)	600, 2484
BsaI	GGTCTC	2 cut(s)	296, 628
BsaJI	CCNNGG	8 cut(s)	105, 106, 946, 1195, 1306, 1386, 2008, 2517
BsaWI	WCCGGW	1 cut(s)	2591
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	7 cut(s)	112, 118, 388, 1295, 2185, 2186, 2804
Bse118I	RCCGGY	1 cut(s)	2591
Bse1I	ACTGG	6 cut(s)	194, 882, 1260, 1730, 1780, 1934
Bse3DI	GCAATG	3 cut(s)	547, 2528, 2667
Bse8I	GATNNNNATC	2 cut(s)	600, 2484
BseBI	CCWGG	4 cut(s)	113, 1050, 2518, 2805
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	8 cut(s)	105, 106, 946, 1195, 1306, 1386, 2008, 2517
BseGI	GGATG	9 cut(s)	412, 728, 886, 1751, 1915, 1939, 2146, 2455, 2485
BseJI	GATNNNNATC	2 cut(s)	600, 2484
BseLI	CCNNNNNNNGG	7 cut(s)	112, 118, 388, 1295, 2185, 2186, 2804
BseMI	GCAATG	3 cut(s)	547, 2528, 2667
BseMII	CTCAG	6 cut(s)	299, 948, 1115, 1248, 1527, 2322
BseNI	ACTGG	6 cut(s)	194, 882, 1260, 1730, 1780, 1934
BseRI	GAGGAG	1 cut(s)	2358
BseXI	GCAGC	6 cut(s)	1283, 1713, 1866, 2520, 2523, 2669
BseYI	CCCAGC	3 cut(s)	248, 2055, 2204
Bsh1236I	CGCG	2 cut(s)	441, 1182
BshFI	GGCC	4 cut(s)	111, 329, 381, 1200
BshNI	GGYRCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	2591
BshVI	ATCGAT	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	4 cut(s)	87, 107, 922, 2592
BslFI	GGGAC	2 cut(s)	293, 1983
BslI	CCNNNNNNNGG	7 cut(s)	112, 118, 388, 1295, 2185, 2186, 2804
BsmAI	GTCTC	7 cut(s)	217, 296, 628, 1125, 1745, 1753, 2370
BsmFI	GGGAC	2 cut(s)	293, 1983
BsnI	GGCC	4 cut(s)	111, 329, 381, 1200
Bso31I	GGTCTC	2 cut(s)	296, 628
BsoBI	CYCGRG	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	2785
Bsp1720I	GCTNAGC	1 cut(s)	1229
BspACI	CCGC	9 cut(s)	36, 191, 246, 441, 690, 857, 910, 2053, 2303
BspANI	GGCC	4 cut(s)	111, 329, 381, 1200
BspCNI	CTCAG	6 cut(s)	298, 949, 1116, 1247, 1526, 2323
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	2 cut(s)	441, 1182
BspHI	TCATGA	1 cut(s)	2035
BspLI	GGNNCC	3 cut(s)	34, 328, 1384
BspMAI	CTGCAG	3 cut(s)	2185, 2541, 2840
BspPI	GGATC	8 cut(s)	540, 596, 719, 932, 1786, 2038, 2067, 2170
BspT104I	TTCGAA	1 cut(s)	2785
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	2 cut(s)	296, 628
BsrDI	GCAATG	3 cut(s)	547, 2528, 2667
BsrFI	RCCGGY	1 cut(s)	2591
BsrI	ACTGG	6 cut(s)	194, 882, 1260, 1730, 1780, 1934
BssAI	RCCGGY	1 cut(s)	2591
BssECI	CCNNGG	8 cut(s)	105, 106, 946, 1195, 1306, 1386, 2008, 2517
BssT1I	CCWWGG	3 cut(s)	946, 1306, 1386
Bst2UI	CCWGG	4 cut(s)	113, 1050, 2518, 2805
Bst4CI	ACNGT	9 cut(s)	83, 317, 345, 482, 805, 1246, 1429, 2009, 2822
Bst6I	CTCTTC	2 cut(s)	981, 2085
BstBI	TTCGAA	1 cut(s)	2785
BstC8I	GCNNGC	6 cut(s)	443, 554, 682, 834, 1568, 2810
BstDEI	CTNAG	9 cut(s)	285, 647, 957, 1124, 1229, 1234, 1513, 1560, 2331
BstDSI	CCRYGG	2 cut(s)	1195, 2008
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	9 cut(s)	412, 728, 886, 1751, 1915, 1939, 2146, 2455, 2485
BstFNI	CGCG	2 cut(s)	441, 1182
BstH2I	RGCGCY	2 cut(s)	1229, 1567
BstHHI	GCGC	3 cut(s)	1184, 1228, 1566
BstMAI	GTCTC	7 cut(s)	217, 296, 628, 1125, 1745, 1753, 2370
BstNI	CCWGG	4 cut(s)	113, 1050, 2518, 2805
BstNSI	RCATGY	4 cut(s)	556, 840, 2793, 2812
BstSCI	CCNGG	7 cut(s)	86, 105, 106, 111, 1048, 2516, 2803
BstSFI	CTRYAG	4 cut(s)	1185, 2181, 2537, 2836
BstUI	CGCG	2 cut(s)	441, 1182
BstV1I	GCAGC	6 cut(s)	1283, 1713, 1866, 2520, 2523, 2669
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	6 cut(s)	532, 724, 1278, 1778, 2030, 2175
BstYI	RGATCY	6 cut(s)	532, 724, 1278, 1778, 2030, 2175
Bsu15I	ATCGAT	1 cut(s)	600
BsuI	GTATCC	2 cut(s)	1594, 1654
BsuRI	GGCC	4 cut(s)	111, 329, 381, 1200
BsuTUI	ATCGAT	1 cut(s)	600
BtgI	CCRYGG	2 cut(s)	1195, 2008
BtgZI	GCGATG	2 cut(s)	55, 190
BtsCI	GGATG	9 cut(s)	412, 728, 886, 1751, 1915, 1939, 2146, 2455, 2485
BtsIMutI	CAGTG	3 cut(s)	459, 1431, 2320
Cac8I	GCNNGC	6 cut(s)	443, 554, 682, 834, 1568, 2810
CaiI	CAGNNNCTG	1 cut(s)	719
CciI	TCATGA	1 cut(s)	2035
CfoI	GCGC	3 cut(s)	1184, 1228, 1566
Cfr10I	RCCGGY	1 cut(s)	2591
Cfr13I	GGNCC	3 cut(s)	109, 327, 588
Cfr9I	CCCGGG	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	600
Csp6I	GTAC	7 cut(s)	13, 346, 860, 875, 1868, 2064, 2122
CspAI	ACCGGT	1 cut(s)	2591
CviQI	GTAC	7 cut(s)	13, 346, 860, 875, 1868, 2064, 2122
DdeI	CTNAG	9 cut(s)	285, 647, 957, 1124, 1229, 1234, 1513, 1560, 2331
DraI	TTTAAA	1 cut(s)	2598
DraIII	CACNNNGTG	1 cut(s)	1454
EaeI	YGGCCR	2 cut(s)	379, 1198
Eam1104I	CTCTTC	2 cut(s)	981, 2085
EarI	CTCTTC	2 cut(s)	981, 2085
EciI	GGCGGA	1 cut(s)	2318
Eco130I	CCWWGG	3 cut(s)	946, 1306, 1386
Eco31I	GGTCTC	2 cut(s)	296, 628
Eco32I	GATATC	2 cut(s)	598, 2638
Eco47I	GGWCC	1 cut(s)	588
Eco47III	AGCGCT	1 cut(s)	1227
Eco57I	CTGAAG	1 cut(s)	1455
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	1479, 2507
EcoRII	CCWGG	4 cut(s)	111, 1048, 2516, 2803
EcoRV	GATATC	2 cut(s)	598, 2638
EcoT14I	CCWWGG	3 cut(s)	946, 1306, 1386
EcoT22I	ATGCAT	1 cut(s)	2814
ErhI	CCWWGG	3 cut(s)	946, 1306, 1386
FalI	AAGNNNNNCTT	3 cut(s)	31, 2592, 2624
FaqI	GGGAC	2 cut(s)	293, 1983
FauI	CCCGC	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	1843
FokI	GGATG	9 cut(s)	419, 715, 893, 1738, 1922, 1946, 2153, 2462, 2492
FspBI	CTAG	5 cut(s)	1103, 1571, 1811, 2258, 2357
GlaI	GCGC	3 cut(s)	1183, 1227, 1565
GsaI	CCCAGC	3 cut(s)	252, 2059, 2208
GsuI	CTGGAG	3 cut(s)	741, 1002, 2553
HaeII	RGCGCY	2 cut(s)	1229, 1567
HaeIII	GGCC	4 cut(s)	111, 329, 381, 1200
HapII	CCGG	4 cut(s)	87, 107, 922, 2592
HhaI	GCGC	3 cut(s)	1184, 1228, 1566
Hin6I	GCGC	3 cut(s)	1182, 1226, 1564
HinP1I	GCGC	3 cut(s)	1182, 1226, 1564
HincII	GTYRAC	1 cut(s)	1257
HindII	GTYRAC	1 cut(s)	1257
HindIII	AAGCTT	1 cut(s)	678
HpaII	CCGG	4 cut(s)	87, 107, 922, 2592
HphI	GGTGA	7 cut(s)	16, 190, 779, 973, 1699, 1832, 2024
Hpy166II	GTNNAC	4 cut(s)	655, 1257, 1924, 2795
Hpy8I	GTNNAC	4 cut(s)	655, 1257, 1924, 2795
Hpy99I	CGWCG	1 cut(s)	2289
HpyCH4III	ACNGT	9 cut(s)	83, 317, 345, 482, 805, 1246, 1429, 2009, 2822
HpyCH4IV	ACGT	4 cut(s)	135, 873, 1413, 2491
HpyF3I	CTNAG	9 cut(s)	285, 647, 957, 1124, 1229, 1234, 1513, 1560, 2331
HpySE526I	ACGT	4 cut(s)	135, 873, 1413, 2491
HspAI	GCGC	3 cut(s)	1182, 1226, 1564
Ksp22I	TGATCA	1 cut(s)	1843
LmnI	GCTCC	3 cut(s)	264, 977, 2189
Lsp1109I	GCAGC	6 cut(s)	1283, 1713, 1866, 2520, 2523, 2669
LweI	GCATC	8 cut(s)	162, 435, 1624, 1924, 2415, 2440, 2704, 2821
MaeI	CTAG	5 cut(s)	1103, 1571, 1811, 2258, 2357
MaeII	ACGT	4 cut(s)	135, 873, 1413, 2491
MfeI	CAATTG	3 cut(s)	2244, 2555, 2678
MflI	RGATCY	6 cut(s)	532, 724, 1278, 1778, 2030, 2175
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	7 cut(s)	275, 710, 1554, 2135, 2234, 2429, 2659
MmeI	TCCRAC	6 cut(s)	1069, 1313, 1360, 1638, 2091, 2640
Mox20I	TGGCCA	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	2814
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	8 cut(s)	164, 663, 675, 1527, 1958, 2403, 2597, 2621
MslI	CAYNNNNRTG	2 cut(s)	576, 1980
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	3 cut(s)	248, 2055, 2573
MspI	CCGG	4 cut(s)	87, 107, 922, 2592
MspR9I	CCNGG	7 cut(s)	88, 107, 108, 113, 1050, 2518, 2805
MunI	CAATTG	3 cut(s)	2244, 2555, 2678
MvaI	CCWGG	4 cut(s)	113, 1050, 2518, 2805
MvnI	CGCG	2 cut(s)	441, 1182
NciI	CCSGG	3 cut(s)	88, 107, 108
NlaIV	GGNNCC	3 cut(s)	34, 328, 1384
NsiI	ATGCAT	1 cut(s)	2814
NspI	RCATGY	4 cut(s)	556, 840, 2793, 2812
NspV	TTCGAA	1 cut(s)	2785
OliI	CACNNNNGTG	1 cut(s)	576
PaeI	GCATGC	2 cut(s)	556, 2812
PagI	TCATGA	1 cut(s)	2035
PciI	ACATGT	1 cut(s)	2789
PflMI	CCANNNNNTGG	1 cut(s)	1295
PfoI	TCCNGGA	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	2591
PleI	GAGTC	7 cut(s)	275, 710, 1553, 2134, 2234, 2428, 2659
PpsI	GAGTC	7 cut(s)	275, 710, 1553, 2134, 2234, 2428, 2659
PscI	ACATGT	1 cut(s)	2789
Psp6I	CCWGG	4 cut(s)	111, 1048, 2516, 2803
PspFI	CCCAGC	3 cut(s)	248, 2055, 2204
PspGI	CCWGG	4 cut(s)	111, 1048, 2516, 2803
PspN4I	GGNNCC	3 cut(s)	34, 328, 1384
PspPI	GGNCC	3 cut(s)	109, 327, 588
PstI	CTGCAG	3 cut(s)	2185, 2541, 2840
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	6 cut(s)	532, 724, 1278, 1778, 2030, 2175
PvuII	CAGCTG	1 cut(s)	2573
RsaI	GTAC	7 cut(s)	14, 347, 861, 876, 1869, 2065, 2123
RsaNI	GTAC	7 cut(s)	13, 346, 860, 875, 1868, 2064, 2122
RseI	CAYNNNNRTG	2 cut(s)	576, 1980
SaqAI	TTAA	8 cut(s)	164, 663, 675, 1527, 1958, 2403, 2597, 2621
Sau96I	GGNCC	3 cut(s)	109, 327, 588
SchI	GAGTC	7 cut(s)	275, 710, 1554, 2135, 2234, 2429, 2659
ScrFI	CCNGG	7 cut(s)	88, 107, 108, 113, 1050, 2518, 2805
SfaNI	GCATC	8 cut(s)	162, 435, 1624, 1924, 2415, 2440, 2704, 2821
SfcI	CTRYAG	4 cut(s)	1185, 2181, 2537, 2836
SfuI	TTCGAA	1 cut(s)	2785
SinI	GGWCC	1 cut(s)	588
SmaI	CCCGGG	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	576, 1980
SmlI	CTYRAG	4 cut(s)	1154, 1782, 2084, 2165
SmoI	CTYRAG	4 cut(s)	1154, 1782, 2084, 2165
SphI	GCATGC	2 cut(s)	556, 2812
SsiI	CCGC	9 cut(s)	36, 191, 246, 441, 690, 857, 910, 2053, 2303
SspI	AATATT	1 cut(s)	2586
SspMI	CTAG	5 cut(s)	1103, 1571, 1811, 2258, 2357
StyD4I	CCNGG	7 cut(s)	86, 105, 106, 111, 1048, 2516, 2803
StyI	CCWWGG	3 cut(s)	946, 1306, 1386
TaaI	ACNGT	9 cut(s)	83, 317, 345, 482, 805, 1246, 1429, 2009, 2822
TaiI	ACGT	4 cut(s)	138, 876, 1416, 2494
TaqI	TCGA	6 cut(s)	537, 600, 1743, 2423, 2785, 2815
TaqII	GACCGA	1 cut(s)	2252
TatI	WGTACW	1 cut(s)	1867
TauI	GCSGC	4 cut(s)	38, 193, 248, 2055
Tru1I	TTAA	8 cut(s)	164, 663, 675, 1527, 1958, 2403, 2597, 2621
Tru9I	TTAA	8 cut(s)	164, 663, 675, 1527, 1958, 2403, 2597, 2621
TscAI	CASTG	3 cut(s)	466, 1438, 2320
TseI	GCWGC	7 cut(s)	1271, 1726, 1854, 2533, 2536, 2657, 2838
TspDTI	ATGAA	8 cut(s)	725, 980, 1503, 1604, 1979, 2157, 2403, 2500
TspMI	CCCGGG	1 cut(s)	106
TspRI	CASTG	3 cut(s)	466, 1438, 2320
Van91I	CCANNNNNTGG	1 cut(s)	1295
VpaK11BI	GGWCC	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	8 cut(s)	273, 294, 515, 582, 826, 1479, 1943, 2507
XceI	RCATGY	4 cut(s)	556, 840, 2793, 2812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1645
XmaI	CCCGGG	1 cut(s)	106
XspI	CTAG	5 cut(s)	1103, 1571, 1811, 2258, 2357
Zsp2I	ATGCAT	1 cut(s)	2814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.