Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

15727661 .. 15735132

Gene Structure 7472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG179100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGTGAAGTCGTACCTCCGTTACGAGCAGGCGGCGGTCTTCGGGGTCATTTCCTCCGGCGATTCAAACATCACCTACGACAGCTCCGGTAAGCACCTTCTTGCTCCCGCCCTCGAAAAGGTAGGCGTTTGGCACGTACGACAGGGCGTTTGTACCAAAACCCTCACCCCTTCTTCCGCCACCGCCGGAAAACCCATCTCTGTCACCTCCATCGCTTCCTCTCATACTTCTCTGATAGCTGCTGGGTATTCAGATGGTAGTATAAGAATTTGGGATTCTGAGAAAGGGACCTGTGAGACTACACTCAATGGACATAAAAAGGCTGTCACTGCCTTACGGTATGACAAGCTTGGATCTAAGCTTGCTTCTGGAAGCAAAGATGACGACATTATATTATGGGATGTGGTCGGTGAGAGCGGCCTATATCGCCTCCGTGGGCATCGTGATCAAGTTACGGATCTTGTCTTCTTGGATTCTGGAAAGAAACTCGTTAGTTCCTCAAAAGATAAATTGTTGAAAGTATGGGATCTTGATACCCAGCATTGCATGCAGACAATAAGTGGCCACCATAGTGAAATATGGTCTATAGATAGTGATCCAGAAGAAAGATATTTAGTCTCTGGGTCTGCAGACGCGGAGCTTAGATTTTACACAATTAAGCATGACTCGGAAGATGGCCAATCCATCTCTAATGGGAATGGAACTGTAACTGCGGGGAGTGGAGATCTACCGGTTCATACTAAATGGGAAGTTTTGAAGATGTTTGGTGAGTTACCACGGAAAAACGAGGGTAGAGTCGCAACTGTGAGATTCAACAAGTCCGGAAATTTGCTGGCTTGTCAGGTGGCGGGAAAGACAGTAGATATATTCCATGTACTGGATGAGGATGAATCCAAGCGGAAAGCAAAACGCAGGCTTCACCGGAAGAAAGAAAAAAAATCTGCCAAGGGGGCACCTCAGGTGTTTGAAAATGGAGACACAGATCGTGTAGTTGGAGAAGAAGGAAATAGTCCTGCTGTTACAGTCCTTGATGTTTTTAAGCTTCTTCAAACTATTCGAGCGAGCAAAAAGATATGTTCCATCTCATTCTGTCCAAACACTACAAAGAGTTCGATGGCTACACTAGCTTTGTCATTGAACAATAATTTGTTGGAATTTTATTCTATTGAAAGCAATGCAACGAACAAAACACTTTCTGTAGAGCTTCAAGGACACCGATCTGATGTCAGAAGTGTAGCACTTAGCTCAGACAACACACTCTTGATGTCAACTAGTCACAATGCAGTAAAGATTTGGAATCCAAGTACTGGTTCCTGCCTGCGAACTATTGATTCCGGATATGGCATGTGTGGTTTTATCATTCCTAACAGCGAGTATGCACTTGTTGGAACTAAAAGTGGAACAATGGAAATTATTAACATTGGAAGTGGCACTTGCATTGAAGCAGTGGAAGCACATGGTGGCTCTGTCATGTCAATTGCTGCCATTCCTAATGAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTTAAGTTTTGGGAATATGAAGTTAAACAGAAGTCTGCTCAAGATTCCAAGCAGCTAGTGGTGTCAAATGTAAGGACTATGAAGATGAACGATGATGCCCTTGTGGTTGCTGTCAGCCCTGATGCCAAATATATCTTGGTTGCACTATTGGATTGCACAGTGAAGGTGTTCTTTATGGATTCACTTAAGCTTTTCCTTTCCTTGTATGGTCATAAGTTGCCTGTATTATGTATGGATACATCATCTGACGGAGACCTAATAGTGACTGGATCTGCTGACAAAAATTTGAAGATTTGGGGTTTAGATTTTGGTGATTGTCATAAATCCTTATTCGCTCATGAGGACAGTGTAACAGCTGTTCGATTTGTGCAAAACACACATTACATGTTTAGTGCTGGAAAGGACCGCATTGTAAAATATTGGGATGCTGATAAATTTCAGTTGCTTTTAACGCTTGAGGGACACCATGCTGAAGTTTGGTGCCTCGGAATTAGTAACCGTGGGGACTTCATTGTCACGGGATCTCATGACAGATCAATACGTCGCTGGGATCGCACTGAAGAGCCATTTTTTATTGAGGAAGAAGAAGAAAAAAGGCAGTTGGAAATGATTGAGTCTGAACTTGACAATATGATAGAGAGCAGGTATCAAAAGGAAGAAATCCCTGAGGTGGGAGCTGTGGCCTTAGCAGGGAAGAAATCTAAAGAAACAATTACAGCTGCTGATGCAATTATCGATGCAATAGATATGGCAGACGCAGAATTGAAGCGACTTGCGGAGCATGAGGAGGAGAAAAGCAGGGGCAATGTTGCTGACTTTAAACCAAATAGTCTCATGAATGGGCTCTCTCCATCTGAATATGTTCTTCGCGCATTTTCAAATGTTCAGACAAATGATCTTGAGCAGACGCTACTGGCTTTACCGTTCTCAGATGCTTTGAAGCTTATGTCTTACTTGAAGGACTGGACTTTGAATCCTGATAAGGTTGAACTCGTTTGCAAGATTTCTTTAGTTCTATTGCAGACACATTTTAATCAGTTGGTTAGTACACCAGCAGCAAGACCAATGTTAACTGCCTTGAAAGAGATTCTTTATCCCGAAGTTAAGGAACGGAAAGACATCATTGGTTTCAACCTTGCAGGGTTGGAACATCTTAAGCAACTAATGGCTTTGAGATCAGACGCATTATTTCAAGATGCAAAATCAAAGTTGCAGGTAATTCGTGCACAGCATTCCAAGCGCCTAGATGCAAGGACAGGCACAGGCAGAGAAGAAAATCAAAGTAAGAAGAGAAAGACAAAAAACAATAAATTGAATGATGGTCACGCTTGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

955

Amino Acids

105.62

Weight (kDa)

6.36

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR75_1st	PF23869	10 - 136	4.8e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_THOC3	PF25174	24 - 218	1.9e-29	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	27 - 222	2.8e-24	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	28 - 102	4.9e-07	WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	28 - 134	1.7e-07	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	31 - 219	5.3e-74	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	31 - 217	4.6e-14	WDR36/Utp21 first beta-propeller
Beta-prop_EML	PF23409	40 - 135	1.1e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	41 - 181	1.8e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	42 - 217	6e-15	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	44 - 137	2.8e-06	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	61 - 180	1.1e-14	SCAP Beta-propeller
Beta-prop_EML_2	PF23414	62 - 181	7.1e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	66 - 176	1.4e-14	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	67 - 137	2.1e-09	WDHD1 first WD40 domain
WDR90_beta-prop_4th	PF23342	69 - 128	1.6e-06	WDR90, 4th beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	74 - 221	9.8e-14	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	75 - 228	2.4e-15	WDR55
Beta-prop_IFT140_1st	PF23383	76 - 135	7.3e-06	IFT140 first beta-propeller
WD40_Prp19	PF24814	78 - 134	5.9e-09	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	78 - 221	2.7e-14	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	96 - 134	7.1e-07	WD domain, G-beta repeat
EIF3I	PF24805	101 - 186	3.2e-08	EIF3I
Beta-prop_WDR5	PF25175	101 - 221	2.6e-25	WDR5 beta-propeller domain
Beta-prop_Aladin	PF25460	106 - 229	2.4e-06	Aladin seven-bladed propeller
WD40_MABP1-WDR62_2nd	PF24782	118 - 224	1.1e-06	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	119 - 223	1.9e-18	Prp19 WD40 domain
WD40_Gbeta	PF25391	127 - 224	2.5e-09	G protein beta WD-40 repeat protein
WD40	PF00400	141 - 176	1.1e-06	WD domain, G-beta repeat
EIF3I	PF24805	144 - 221	2.1e-10	EIF3I
Beta-prop_WDR3_2nd	PF25172	144 - 218	9.6e-14	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	150 - 224	2e-10	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	172 - 228	1e-07	WDR3 second beta-propeller domain
WD40	PF00400	181 - 217	1e-05	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	262 - 514	1.4e-15	CDC20/Fizzy WD40 domain
WDR55	PF24796	351 - 524	7.8e-06	WDR55
Beta-prop_WDR5	PF25175	355 - 566	1.7e-17	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	357 - 515	3.1e-14	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	375 - 618	2.3e-24	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	377 - 609	7.7e-14	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	401 - 651	2e-11	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	408 - 699	1.7e-135	WDR3 second beta-propeller domain
PEP5_VPS11_N	PF23341	455 - 718	4.4e-07	PEP5/VPS11 N-terminal
WD40_WDHD1_1st	PF24817	456 - 571	4.3e-06	WDHD1 first WD40 domain
WD40_Prp19	PF24814	457 - 653	1.3e-22	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	458 - 639	6.4e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	492 - 657	2.2e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	499 - 696	1.1e-15	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	533 - 694	3.4e-23	THOC3 beta-propeller domain
WDR55	PF24796	537 - 711	8.7e-11	WDR55
Beta-prop_WDR3_1st	PF25173	539 - 694	1.5e-31	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	540 - 693	7.5e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	545 - 696	4.2e-29	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	555 - 693	3.3e-06	WDR36/Utp21 first beta-propeller
WD40	PF00400	576 - 609	1.1e-07	WD domain, G-beta repeat
Beta-prop_EML	PF23409	584 - 655	5.3e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	597 - 694	1.4e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	614 - 652	8e-06	WD domain, G-beta repeat
EIF3I	PF24805	620 - 697	3e-10	EIF3I
WD40_Prp19	PF24814	641 - 800	2.3e-08	Prp19 WD40 domain
WD40	PF00400	657 - 694	2.9e-08	WD domain, G-beta repeat
Utp12	PF04003	795 - 897	4.6e-23	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2042
Acc36I	ACCTGC	2 cut(s)	2163, 2734
AccB1I	GGYRCC	2 cut(s)	952, 2010
AccB7I	CCANNNNNTGG	2 cut(s)	877, 1307
AccBSI	CCGCTC	1 cut(s)	417
AccII	CGCG	2 cut(s)	635, 2400
AccIII	TCCGGA	2 cut(s)	821, 1334
AclWI	GGATC	7 cut(s)	361, 465, 534, 590, 1807, 2059, 2088
AcoI	YGGCCR	2 cut(s)	562, 676
AcsI	RAATTY	5 cut(s)	267, 826, 1154, 1813, 1964
AcuI	CTGAAG	2 cut(s)	2022, 2109
AdeI	CACNNNGTG	1 cut(s)	1460
AfaI	GTAC	6 cut(s)	14, 138, 154, 876, 1306, 2578
AfiI	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
AflII	CTTAAG	2 cut(s)	1715, 2684
AflIII	ACRYGT	1 cut(s)	1914
AgeI	ACCGGT	1 cut(s)	730
AhlI	ACTAGT	1 cut(s)	1271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1294, 1326
AleI	CACNNNNGTG	1 cut(s)	570
Alw21I	GWGCWC	1 cut(s)	2758
Alw26I	GTCTC	5 cut(s)	290, 622, 969, 1776, 2366
Alw44I	GTGCAC	1 cut(s)	2754
AlwI	GGATC	7 cut(s)	361, 465, 534, 590, 1807, 2059, 2088
AlwNI	CAGNNNCTG	1 cut(s)	2252
Aor13HI	TCCGGA	2 cut(s)	821, 1334
AoxI	GGCC	4 cut(s)	418, 562, 676, 2211
ApaLI	GTGCAC	1 cut(s)	2754
ApeKI	GCWGC	5 cut(s)	239, 1481, 1582, 2249, 2585
ApoI	RAATTY	5 cut(s)	267, 826, 1154, 1813, 1964
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	1 cut(s)	730
Asp700I	GAANNNNTTC	2 cut(s)	1697, 2391
AspLEI	GCGC	2 cut(s)	2402, 2772
AspS9I	GGNCC	2 cut(s)	288, 1933
AsuHPI	GGTGA	8 cut(s)	16, 64, 157, 196, 422, 779, 911, 1853
AvaII	GGWCC	2 cut(s)	288, 1933
AxyI	CCTNAGG	2 cut(s)	957, 2196
BaeGI	GKGCMC	2 cut(s)	955, 2758
BalI	TGGCCA	2 cut(s)	564, 678
BanI	GGYRCC	2 cut(s)	952, 2010
BanII	GRGCYC	1 cut(s)	2376
BbsI	GAAGAC	2 cut(s)	31, 457
Bbv12I	GWGCWC	1 cut(s)	2758
BbvI	GCAGC	5 cut(s)	226, 1468, 1594, 2236, 2597
BccI	CCATC	9 cut(s)	203, 218, 248, 668, 692, 1088, 1108, 2389, 2843
BcgI	CGANNNNNNTGC	2 cut(s)	2732, 2766
BciVI	GTATCC	1 cut(s)	1759
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	5 cut(s)	290, 622, 969, 1776, 2366
BcuI	ACTAGT	1 cut(s)	1271
BfaI	CTAG	4 cut(s)	1124, 1272, 1586, 2774
BfmI	CTRYAG	3 cut(s)	585, 627, 1197
BfoI	RGCGCY	1 cut(s)	2773
BfrI	CTTAAG	2 cut(s)	1715, 2684
BfuAI	ACCTGC	2 cut(s)	2163, 2734
BfuI	GTATCC	1 cut(s)	1759
BglI	GCCNNNNNGGC	1 cut(s)	950
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	7 cut(s)	33, 240, 418, 1482, 1583, 2250, 2586
BlsI	GCNGC	7 cut(s)	34, 241, 419, 1483, 1584, 2251, 2587
BmcAI	AGTACT	1 cut(s)	1306
Bme18I	GGWCC	2 cut(s)	288, 1933
BmgT120I	GGNCC	2 cut(s)	288, 1933
BmiI	GGNNCC	4 cut(s)	289, 954, 1312, 2012
BmsI	GCATC	9 cut(s)	448, 1615, 1642, 1945, 2245, 2257, 2452, 2716, 2767
BpiI	GAAGAC	2 cut(s)	31, 457
Bpu10I	CCTNAGC	1 cut(s)	2215
BpuEI	CTTGAG	3 cut(s)	1554, 2006, 2450
Bsa29I	ATCGAT	1 cut(s)	2265
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	1776
BsaJI	CCNNGG	5 cut(s)	433, 776, 945, 2014, 2029
BsaWI	WCCGGW	5 cut(s)	86, 730, 821, 921, 1334
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	5 cut(s)	882, 1312, 1801, 2448, 2498
Bse21I	CCTNAGG	2 cut(s)	957, 2196
Bse3DI	GCAATG	3 cut(s)	541, 1180, 2341
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	2 cut(s)	821, 1334
BseCI	ATCGAT	1 cut(s)	2265
BseDI	CCNNGG	5 cut(s)	433, 776, 945, 2014, 2029
BseGI	GGATG	4 cut(s)	406, 886, 892, 1960
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
BseMI	GCAATG	3 cut(s)	541, 1180, 2341
BseMII	CTCAG	5 cut(s)	270, 971, 1260, 2187, 2472
BseNI	ACTGG	5 cut(s)	882, 1312, 1801, 2448, 2498
BseRI	GAGGAG	2 cut(s)	2330, 2333
BseSI	GKGCMC	2 cut(s)	955, 2758
BseXI	GCAGC	5 cut(s)	226, 1468, 1594, 2236, 2597
BseYI	CCCAGC	3 cut(s)	242, 537, 2076
BsgI	GTGCAG	1 cut(s)	1539
Bsh1236I	CGCG	2 cut(s)	635, 2400
BshFI	GGCC	4 cut(s)	420, 564, 678, 2213
BshNI	GGYRCC	2 cut(s)	952, 2010
BshTI	ACCGGT	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	2265
BsiHKAI	GWGCWC	1 cut(s)	2758
BsiSI	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
BsiWI	CGTACG	1 cut(s)	136
BslFI	GGGAC	3 cut(s)	301, 2004, 2048
BslI	CCNNNNNNNGG	6 cut(s)	118, 877, 1307, 2200, 2201, 2220
BsmAI	GTCTC	5 cut(s)	290, 622, 969, 1776, 2366
BsmFI	GGGAC	3 cut(s)	301, 2004, 2048
BsmI	GAATGC	1 cut(s)	2761
BsnI	GGCC	4 cut(s)	420, 564, 678, 2213
Bso31I	GGTCTC	1 cut(s)	1776
Bsp1286I	GDGCHC	3 cut(s)	955, 2376, 2758
Bsp13I	TCCGGA	2 cut(s)	821, 1334
BspANI	GGCC	4 cut(s)	420, 564, 678, 2213
BspCNI	CTCAG	5 cut(s)	271, 970, 1259, 2188, 2471
BspDI	ATCGAT	1 cut(s)	2265
BspEI	TCCGGA	2 cut(s)	821, 1334
BspFNI	CGCG	2 cut(s)	635, 2400
BspHI	TCATGA	4 cut(s)	1525, 1867, 2056, 2364
BspLI	GGNNCC	4 cut(s)	289, 954, 1312, 2012
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	2 cut(s)	2163, 2734
BspPI	GGATC	7 cut(s)	361, 465, 534, 590, 1807, 2059, 2088
BspQI	GCTCTTC	1 cut(s)	2085
BspT107I	GGYRCC	2 cut(s)	952, 2010
BspTI	CTTAAG	2 cut(s)	1715, 2684
BspTNI	GGTCTC	1 cut(s)	1776
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	3 cut(s)	541, 1180, 2341
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	5 cut(s)	882, 1312, 1801, 2448, 2498
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	5 cut(s)	433, 776, 945, 2014, 2029
BssT1I	CCWWGG	1 cut(s)	945
Bst4CI	ACNGT	9 cut(s)	339, 706, 805, 859, 1024, 1690, 1877, 2030, 2454
Bst6I	CTCTTC	2 cut(s)	2085, 2813
BstAFI	CTTAAG	2 cut(s)	1715, 2684
BstAPI	GCANNNNNTGC	1 cut(s)	547
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	7 cut(s)	30, 363, 548, 834, 914, 1063, 1319
BstDEI	CTNAG	9 cut(s)	279, 357, 641, 957, 1241, 1246, 2196, 2215, 2458
BstDSI	CCRYGG	3 cut(s)	433, 776, 2029
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	4 cut(s)	406, 886, 892, 1960
BstFNI	CGCG	2 cut(s)	635, 2400
BstH2I	RGCGCY	1 cut(s)	2773
BstHHI	GCGC	2 cut(s)	2402, 2772
BstMAI	GTCTC	5 cut(s)	290, 622, 969, 1776, 2366
BstNSI	RCATGY	3 cut(s)	550, 1348, 1918
BstSFI	CTRYAG	3 cut(s)	585, 627, 1197
BstSLI	GKGCMC	2 cut(s)	955, 2758
BstUI	CGCG	2 cut(s)	635, 2400
BstV1I	GCAGC	5 cut(s)	226, 1468, 1594, 2236, 2597
BstV2I	GAAGAC	2 cut(s)	31, 457
BstX2I	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
BstYI	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
Bsu15I	ATCGAT	1 cut(s)	2265
Bsu36I	CCTNAGG	2 cut(s)	957, 2196
BsuI	GTATCC	1 cut(s)	1759
BsuRI	GGCC	4 cut(s)	420, 564, 678, 2213
BsuTUI	ATCGAT	1 cut(s)	2265
BtgI	CCRYGG	3 cut(s)	433, 776, 2029
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	406, 886, 892, 1960
BtsI	GCAGTG	2 cut(s)	327, 1452
BtsIMutI	CAGTG	5 cut(s)	327, 1452, 1695, 1882, 2085
BveI	ACCTGC	2 cut(s)	2163, 2734
Cac8I	GCNNGC	7 cut(s)	30, 363, 548, 834, 914, 1063, 1319
CaiI	CAGNNNCTG	1 cut(s)	2252
CciI	TCATGA	4 cut(s)	1525, 1867, 2056, 2364
CfoI	GCGC	2 cut(s)	2402, 2772
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	2 cut(s)	288, 1933
ClaI	ATCGAT	1 cut(s)	2265
CseI	GACGC	4 cut(s)	641, 2294, 2446, 2720
Csp6I	GTAC	6 cut(s)	13, 137, 153, 875, 1305, 2577
CspAI	ACCGGT	1 cut(s)	730
CviQI	GTAC	6 cut(s)	13, 137, 153, 875, 1305, 2577
DdeI	CTNAG	9 cut(s)	279, 357, 641, 957, 1241, 1246, 2196, 2215, 2458
DraI	TTTAAA	1 cut(s)	2350
DraIII	CACNNNGTG	1 cut(s)	1460
DrdI	GACNNNNNNGTC	1 cut(s)	2042
DseDI	GACNNNNNNGTC	1 cut(s)	2042
EaeI	YGGCCR	2 cut(s)	562, 676
Eam1104I	CTCTTC	2 cut(s)	2085, 2813
EarI	CTCTTC	2 cut(s)	2085, 2813
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	945
Eco24I	GRGCYC	1 cut(s)	2376
Eco31I	GGTCTC	1 cut(s)	1776
Eco47I	GGWCC	2 cut(s)	288, 1933
Eco57I	CTGAAG	2 cut(s)	2022, 2109
Eco81I	CCTNAGG	2 cut(s)	957, 2196
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	945
EcoT38I	GRGCYC	1 cut(s)	2376
ErhI	CCWWGG	1 cut(s)	945
FalI	AAGNNNNNCTT	6 cut(s)	1417, 1449, 1685, 1717, 2604, 2636
FaqI	GGGAC	3 cut(s)	301, 2004, 2048
FauI	CCCGC	3 cut(s)	115, 706, 841
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	7 cut(s)	33, 240, 418, 1482, 1583, 2250, 2586
FokI	GGATG	4 cut(s)	413, 893, 899, 1967
FriOI	GRGCYC	1 cut(s)	2376
Fsp4HI	GCNGC	7 cut(s)	33, 240, 418, 1482, 1583, 2250, 2586
FspBI	CTAG	4 cut(s)	1124, 1272, 1586, 2774
GlaI	GCGC	2 cut(s)	2401, 2771
GluI	GCNGC	7 cut(s)	33, 240, 418, 1482, 1583, 2250, 2586
GsaI	CCCAGC	3 cut(s)	246, 541, 2080
HaeII	RGCGCY	1 cut(s)	2773
HaeIII	GGCC	4 cut(s)	420, 564, 678, 2213
HapII	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
HgaI	GACGC	4 cut(s)	641, 2294, 2446, 2720
HhaI	GCGC	2 cut(s)	2402, 2772
Hin6I	GCGC	2 cut(s)	2400, 2770
HinP1I	GCGC	2 cut(s)	2400, 2770
HincII	GTYRAC	2 cut(s)	1269, 2601
HindII	GTYRAC	2 cut(s)	1269, 2601
HindIII	AAGCTT	5 cut(s)	347, 359, 1040, 1718, 2471
HpaI	GTTAAC	1 cut(s)	2601
HpaII	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
HphI	GGTGA	8 cut(s)	16, 64, 157, 196, 422, 779, 911, 1853
Hpy166II	GTNNAC	4 cut(s)	1269, 2579, 2601, 2756
Hpy8I	GTNNAC	4 cut(s)	1269, 2579, 2601, 2756
Hpy99I	CGWCG	1 cut(s)	2076
HpyAV	CCTTC	5 cut(s)	107, 180, 995, 1687, 2482
HpyCH4III	ACNGT	9 cut(s)	339, 706, 805, 859, 1024, 1690, 1877, 2030, 2454
HpyCH4IV	ACGT	2 cut(s)	135, 2071
HpyF3I	CTNAG	9 cut(s)	279, 357, 641, 957, 1241, 1246, 2196, 2215, 2458
HpySE526I	ACGT	2 cut(s)	135, 2071
HspAI	GCGC	2 cut(s)	2400, 2770
Kpn2I	TCCGGA	2 cut(s)	821, 1334
Ksp22I	TGATCA	1 cut(s)	445
KspAI	GTTAAC	1 cut(s)	2601
LguI	GCTCTTC	1 cut(s)	2085
LmnI	GCTCC	5 cut(s)	89, 109, 637, 2204, 2308
Lsp1109I	GCAGC	5 cut(s)	226, 1468, 1594, 2236, 2597
LweI	GCATC	9 cut(s)	448, 1615, 1642, 1945, 2245, 2257, 2452, 2716, 2767
MaeI	CTAG	4 cut(s)	1124, 1272, 1586, 2774
MaeII	ACGT	2 cut(s)	135, 2071
MbiI	CCGCTC	1 cut(s)	417
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
MhlI	GDGCHC	3 cut(s)	955, 2376, 2758
MlsI	TGGCCA	2 cut(s)	564, 678
MluNI	TGGCCA	2 cut(s)	564, 678
MlyI	GAGTC	3 cut(s)	659, 804, 2153
MmeI	TCCRAC	5 cut(s)	973, 1131, 1366, 2112, 2655
Mox20I	TGGCCA	2 cut(s)	564, 678
MroI	TCCGGA	2 cut(s)	821, 1334
MroXI	GAANNNNTTC	2 cut(s)	1697, 2391
MscI	TGGCCA	2 cut(s)	564, 678
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	2 cut(s)	564, 678
MspA1I	CMGCKG	2 cut(s)	1886, 2249
MspCI	CTTAAG	2 cut(s)	1715, 2684
MspI	CCGG	7 cut(s)	57, 87, 186, 731, 822, 922, 1335
MunI	CAATTG	1 cut(s)	1476
Mva1269I	GAATGC	1 cut(s)	2761
MvnI	CGCG	2 cut(s)	635, 2400
NlaIV	GGNNCC	4 cut(s)	289, 954, 1312, 2012
NmuCI	GTSAC	7 cut(s)	202, 325, 1274, 1507, 1792, 2044, 2852
NspI	RCATGY	3 cut(s)	550, 1348, 1918
OliI	CACNNNNGTG	1 cut(s)	570
PaeI	GCATGC	1 cut(s)	550
PagI	TCATGA	4 cut(s)	1525, 1867, 2056, 2364
PciI	ACATGT	1 cut(s)	1914
PciSI	GCTCTTC	1 cut(s)	2085
PctI	GAATGC	1 cut(s)	2761
PdmI	GAANNNNTTC	2 cut(s)	1697, 2391
Pfl23II	CGTACG	1 cut(s)	136
PflMI	CCANNNNNTGG	2 cut(s)	877, 1307
PinAI	ACCGGT	1 cut(s)	730
PkrI	GCNGC	7 cut(s)	34, 241, 419, 1483, 1584, 2251, 2587
PleI	GAGTC	3 cut(s)	659, 803, 2152
PpsI	GAGTC	3 cut(s)	659, 803, 2152
Ppu21I	YACGTR	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	288
PscI	ACATGT	1 cut(s)	1914
Psp5II	RGGWCCY	1 cut(s)	288
PspFI	CCCAGC	3 cut(s)	242, 537, 2076
PspLI	CGTACG	1 cut(s)	136
PspN4I	GGNNCC	4 cut(s)	289, 954, 1312, 2012
PspPI	GGNCC	2 cut(s)	288, 1933
PspPPI	RGGWCCY	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	1872, 1904
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	2252
PsuI	RGATCY	6 cut(s)	353, 457, 526, 724, 1799, 2051
PvuII	CAGCTG	2 cut(s)	1886, 2249
RsaI	GTAC	6 cut(s)	14, 138, 154, 876, 1306, 2578
RsaNI	GTAC	6 cut(s)	13, 137, 153, 875, 1305, 2577
RseI	CAYNNNNRTG	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	2085
SatI	GCNGC	7 cut(s)	33, 240, 418, 1482, 1583, 2250, 2586
Sau96I	GGNCC	2 cut(s)	288, 1933
ScaI	AGTACT	1 cut(s)	1306
SchI	GAGTC	3 cut(s)	659, 804, 2153
SduI	GDGCHC	3 cut(s)	955, 2376, 2758
SfaNI	GCATC	9 cut(s)	448, 1615, 1642, 1945, 2245, 2257, 2452, 2716, 2767
SfcI	CTRYAG	3 cut(s)	585, 627, 1197
SinI	GGWCC	2 cut(s)	288, 1933
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	5 cut(s)	1569, 1715, 1985, 2429, 2684
SmoI	CTYRAG	5 cut(s)	1569, 1715, 1985, 2429, 2684
SpeI	ACTAGT	1 cut(s)	1271
SphI	GCATGC	1 cut(s)	550
SspI	AATATT	1 cut(s)	1949
SspMI	CTAG	4 cut(s)	1124, 1272, 1586, 2774
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	9 cut(s)	339, 706, 805, 859, 1024, 1690, 1877, 2030, 2454
TaiI	ACGT	2 cut(s)	138, 2074
TaqI	TCGA	5 cut(s)	114, 1057, 1112, 1891, 2265
TatI	WGTACW	3 cut(s)	874, 1304, 2576
TauI	GCSGC	2 cut(s)	35, 420
TscAI	CASTG	5 cut(s)	334, 1452, 1695, 1882, 2092
TseFI	GTSAC	7 cut(s)	202, 325, 1274, 1507, 1792, 2044, 2852
TseI	GCWGC	5 cut(s)	239, 1481, 1582, 2249, 2585
Tsp45I	GTSAC	7 cut(s)	202, 325, 1274, 1507, 1792, 2044, 2852
TspDTI	ATGAA	8 cut(s)	725, 903, 1509, 1563, 1625, 1631, 2029, 2381
TspGWI	ACGGA	6 cut(s)	8, 422, 470, 793, 1794, 2656
TspRI	CASTG	5 cut(s)	334, 1452, 1695, 1882, 2092
Van91I	CCANNNNNTGG	2 cut(s)	877, 1307
Vha464I	CTTAAG	2 cut(s)	1715, 2684
VneI	GTGCAC	1 cut(s)	2754
VpaK11BI	GGWCC	2 cut(s)	288, 1933
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	5 cut(s)	267, 826, 1154, 1813, 1964
XceI	RCATGY	3 cut(s)	550, 1348, 1918
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1585, 1663
XmnI	GAANNNNTTC	2 cut(s)	1697, 2391
XspI	CTAG	4 cut(s)	1124, 1272, 1586, 2774
ZrmI	AGTACT	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.