Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8279299.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 251

Gene Structure 251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8279299.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atggtgaagtcgtacctccgttacgagcaggcggcggtcttcggggtcatttcctccggcgattcaaacatcacctacgacagctccggcaagcaccttcttgctcccgccctcgaaaaggtaggcgtttggcacgtacgacagggcgtttgtaccaaaaccctcaccccttcttccgccaccgccggaaaacccatctctgtcacctccatcgcttcctctcatacttctctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

78

Amino Acids

8.19

Weight (kDa)

9.3

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	32, 35, 108, 177, 183
AfaI	GTAC	3 cut(s)	14, 138, 154
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	66
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsuHPI	GGTGA	4 cut(s)	16, 64, 157, 196
BbsI	GAAGAC	1 cut(s)	31
BccI	CCATC	2 cut(s)	203, 218
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	57, 87, 186
BsiWI	CGTACG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	118
BspACI	CCGC	5 cut(s)	32, 35, 108, 177, 183
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	30, 92
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	30, 92
Csp6I	GTAC	3 cut(s)	13, 137, 153
CviJI	RGCY	1 cut(s)	84
CviKI_1	RGCY	1 cut(s)	84
CviQI	GTAC	3 cut(s)	13, 137, 153
EciI	GGCGGA	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	116
FaiI	YATR	1 cut(s)	225
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
HapII	CCGG	3 cut(s)	57, 87, 186
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	57, 87, 186
HphI	GGTGA	4 cut(s)	16, 64, 157, 196
HpyAV	CCTTC	2 cut(s)	107, 180
HpyCH4IV	ACGT	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	89, 109
LpnPI	CCDG	5 cut(s)	14, 70, 100, 128, 199
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	20, 202
MboII	GAAGA	2 cut(s)	31, 165
MnlI	CCTC	6 cut(s)	26, 64, 122, 173, 217, 229
MspI	CCGG	3 cut(s)	57, 87, 186
NmuCI	GTSAC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	62
Pfl23II	CGTACG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	136
PspLI	CGTACG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	14, 138, 154
RsaNI	GTAC	3 cut(s)	13, 137, 153
SatI	GCNGC	1 cut(s)	33
SetI	ASST	7 cut(s)	18, 77, 86, 99, 123, 138, 209
SsiI	CCGC	5 cut(s)	32, 35, 108, 177, 183
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	114
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	8
XagI	CCTNNNNNAGG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.