Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

14154756 .. 14156012

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0172800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAGGAGGTTCAGGGAAGCTTTGGGCTATGGTGATCTTGTGGACTTGGGGTATGCAAGAGTCAAACACCTCCCTCCAAGTGATTCTGATCATATCCCAATTCTGCTTCAAGCTAGTTCTGTTCCTCTGCCGAAGCGTCCAAGACAGTGCGACCCTCTTGTGTCAGACAATTGGCAAACTGAGTTTCTTGGTGCACCTATGTATTGCTTGACTAGGAAGATTACAAAAACCAGACGTGCATTAGAAAAATGGCAACAAGAAACCTTTCGTTTGCGTCAACAGCAGATGATGGAGGTAAGAGGTAAACTGGAGGTGTTAATGGATGAGCCTATGTCAGAGGCGATTCATATTGAAAAGAAGGAATTGATGGTGAAGCTTCAAACCTTGTTATCACAGGAAGAAGCCTTCTGGAAGCAACGAGCTAAAGTAACATGGTTAAAAGAAGGAGATTGCAACTCCGGTTTTTTTCATAGGAAAGCAGCTAATCGGAAGCGGAAAAATAATCTATTGGGGTTGTTTGATACTTCAGGGCAGTGGCATGATGATGATGATGACATGGAAGAGGTGGTGTCTAGCTATTTTGCTAAGATGTTTACTGCTTCTTCCGTTGATACTGAGGCAGTGGAGATTACTCTAGCAGCTATTCAACCGTCTGTTACTAGTGATATGAACTTGCTTTTGTGTGCTCAATATACGGAAGACGAAGTGCGCTGTGCTCTTTTTCAAATGTATCCCACAAAATCCCCAGGTCCAGATGGAATGCCGCCCTTGTTTTTTCAACACTATTGGGATACGATTGGGAAAGATGTGACTACAGCTGTCCAGAGTTTTTTACATACAGGTTTGCTACTTAAGCAGATTAATTTCACACATATATGTCTTATACCTAAGGTACAGAATCCTGAGAATATGGCTGATCTGCGTCCCATTGCCCTCTGTAATGTTATCTATAAGTTGTGCTCTAAGGTCATAGCTAACAGGTTGAAAACTATCCTTCCTACCATTATATCTCCTTTTCAAAGTGCGTTTGTCCCTGGCCGATTGATTATTGATAATAGGACTAAATTCTGCTTACTACCCTGTACTTTCAAGGGTTCATCAATTCAGTCTCTGCACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

373

Amino Acids

42.72

Weight (kDa)

8.44

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	298 - 351	2.9e-06	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	493, 764
AcoI	YGGCCR	1 cut(s)	1036
AcsI	RAATTY	1 cut(s)	1064
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	2 cut(s)	894, 1084
AflII	CTTAAG	1 cut(s)	851
AgsI	TTSAA	9 cut(s)	110, 353, 380, 647, 725, 779, 985, 1019, 1090
AhlI	ACTAGT	1 cut(s)	659
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	745, 1033
AluBI	AGCT	9 cut(s)	20, 113, 376, 422, 482, 576, 641, 818, 974
AluI	AGCT	9 cut(s)	20, 113, 376, 422, 482, 576, 641, 818, 974
Alw21I	GWGCWC	4 cut(s)	196, 688, 718, 962
Alw26I	GTCTC	1 cut(s)	1113
Alw44I	GTGCAC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	1111
AoxI	GGCC	1 cut(s)	1036
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	479, 638
ApoI	RAATTY	1 cut(s)	1064
AseI	ATTAAT	1 cut(s)	861
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	2 cut(s)	44, 382
AvaII	GGWCC	1 cut(s)	749
AxyI	CCTNAGG	1 cut(s)	888
BaeGI	GKGCMC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	4 cut(s)	196, 688, 718, 962
BbvI	GCAGC	2 cut(s)	491, 650
BccI	CCATC	3 cut(s)	283, 361, 749
BciT130I	CCWGG	2 cut(s)	747, 1035
BciVI	GTATCC	2 cut(s)	741, 784
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	1113
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	5 cut(s)	114, 213, 573, 635, 660
BfmI	CTRYAG	1 cut(s)	813
BfrI	CTTAAG	1 cut(s)	851
BfuI	GTATCC	2 cut(s)	741, 784
BisI	GCNGC	3 cut(s)	480, 639, 764
BlsI	GCNGC	3 cut(s)	481, 640, 765
Bme1390I	CCNGG	2 cut(s)	747, 1035
Bme18I	GGWCC	1 cut(s)	749
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	749
BmrFI	CCNGG	2 cut(s)	747, 1035
BpiI	GAAGAC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	745, 1033
BsaWI	WCCGGW	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	888
Bse3DI	GCAATG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	747, 1035
BseDI	CCNNGG	2 cut(s)	745, 1033
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	3 cut(s)	171, 606, 894
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	491, 650
BsgI	GTGCAG	1 cut(s)	1097
BshFI	GGCC	1 cut(s)	1038
BsiHKAI	GWGCWC	4 cut(s)	196, 688, 718, 962
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	2 cut(s)	909, 1016
BsmAI	GTCTC	1 cut(s)	1113
BsmFI	GGGAC	2 cut(s)	909, 1016
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	1 cut(s)	1038
Bsp1286I	GDGCHC	4 cut(s)	196, 688, 718, 962
Bsp143I	GATC	3 cut(s)	34, 88, 916
BspACI	CCGC	2 cut(s)	493, 764
BspANI	GGCC	1 cut(s)	1038
BspCNI	CTCAG	3 cut(s)	172, 607, 895
BspTI	CTTAAG	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	927
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	745, 1033
BssMI	GATC	3 cut(s)	34, 88, 916
Bst2UI	CCWGG	2 cut(s)	747, 1035
Bst4CI	ACNGT	2 cut(s)	147, 651
Bst6I	CTCTTC	1 cut(s)	555
BstAFI	CTTAAG	1 cut(s)	851
BstDEI	CTNAG	6 cut(s)	180, 585, 615, 888, 903, 963
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	3 cut(s)	37, 91, 919
BstMAI	GTCTC	1 cut(s)	1113
BstMBI	GATC	3 cut(s)	34, 88, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 853
BstNI	CCWGG	2 cut(s)	747, 1035
BstSCI	CCNGG	2 cut(s)	745, 1033
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	491, 650
BstV2I	GAAGAC	1 cut(s)	705
Bsu36I	CCTNAGG	1 cut(s)	888
BsuI	GTATCC	2 cut(s)	741, 784
BsuRI	GGCC	1 cut(s)	1038
BtrI	CACGTC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	2 cut(s)	539, 627
BtsIMutI	CAGTG	3 cut(s)	152, 539, 627
CaiI	CAGNNNCTG	1 cut(s)	1111
CfoI	GCGC	1 cut(s)	711
Cfr13I	GGNCC	1 cut(s)	749
CseI	GACGC	3 cut(s)	125, 263, 911
Csp6I	GTAC	2 cut(s)	893, 1083
CviAII	CATG	3 cut(s)	432, 539, 556
CviQI	GTAC	2 cut(s)	893, 1083
DdeI	CTNAG	6 cut(s)	180, 585, 615, 888, 903, 963
DpnI	GATC	3 cut(s)	36, 90, 918
DpnII	GATC	3 cut(s)	34, 88, 916
EaeI	YGGCCR	1 cut(s)	1036
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	510
Eco81I	CCTNAGG	1 cut(s)	888
EcoRII	CCWGG	2 cut(s)	745, 1033
FaeI	CATG	3 cut(s)	435, 542, 559
FaqI	GGGAC	2 cut(s)	909, 1016
FatI	CATG	3 cut(s)	431, 538, 555
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	480, 639, 764
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	480, 639, 764
FspBI	CTAG	5 cut(s)	114, 213, 573, 635, 660
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	3 cut(s)	480, 639, 764
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	1038
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	3 cut(s)	125, 263, 911
HhaI	GCGC	1 cut(s)	711
Hin1II	CATG	3 cut(s)	435, 542, 559
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HindIII	AAGCTT	2 cut(s)	18, 374
HinfI	GANTC	4 cut(s)	60, 83, 343, 898
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	44, 382
Hpy166II	GTNNAC	5 cut(s)	43, 194, 278, 305, 594
Hpy188I	TCNGA	4 cut(s)	88, 166, 337, 489
Hpy188III	TCNNGA	4 cut(s)	409, 752, 823, 902
Hpy8I	GTNNAC	5 cut(s)	43, 194, 278, 305, 594
HpyAV	CCTTC	4 cut(s)	352, 415, 437, 1004
HpyCH4III	ACNGT	2 cut(s)	147, 651
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	56, 194, 239, 453, 1114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 853
HpyF3I	CTNAG	6 cut(s)	180, 585, 615, 888, 903, 963
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	3 cut(s)	435, 542, 559
HspAI	GCGC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	34, 88, 916
Lsp1109I	GCAGC	2 cut(s)	491, 650
MaeI	CTAG	5 cut(s)	114, 213, 573, 635, 660
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	3 cut(s)	427, 655, 808
MalI	GATC	3 cut(s)	36, 90, 918
MboI	GATC	3 cut(s)	34, 88, 916
MboII	GAAGA	5 cut(s)	229, 410, 572, 594, 710
MfeI	CAATTG	1 cut(s)	169
MhlI	GDGCHC	4 cut(s)	196, 688, 718, 962
MluCI	AATT	6 cut(s)	99, 169, 362, 862, 1064, 1101
MlyI	GAGTC	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	4 cut(s)	317, 437, 852, 861
MslI	CAYNNNNRTG	2 cut(s)	543, 874
MspA1I	CMGCKG	1 cut(s)	818
MspCI	CTTAAG	1 cut(s)	851
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	2 cut(s)	747, 1035
MunI	CAATTG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	747, 1035
MwoI	GCNNNNNNNGC	2 cut(s)	280, 853
NdeII	GATC	3 cut(s)	34, 88, 916
NlaIII	CATG	3 cut(s)	435, 542, 559
NmuCI	GTSAC	1 cut(s)	808
PctI	GAATGC	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	3 cut(s)	83, 343, 898
PkrI	GCNGC	3 cut(s)	481, 640, 765
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PshBI	ATTAAT	1 cut(s)	861
Psp6I	CCWGG	2 cut(s)	745, 1033
PspGI	CCWGG	2 cut(s)	745, 1033
PspPI	GGNCC	1 cut(s)	749
PstNI	CAGNNNCTG	1 cut(s)	1111
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	2 cut(s)	894, 1084
RsaNI	GTAC	2 cut(s)	893, 1083
RseI	CAYNNNNRTG	2 cut(s)	543, 874
SaqAI	TTAA	4 cut(s)	317, 437, 852, 861
SatI	GCNGC	3 cut(s)	480, 639, 764
Sau3AI	GATC	3 cut(s)	34, 88, 916
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	747, 1035
SduI	GDGCHC	4 cut(s)	196, 688, 718, 962
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	2 cut(s)	543, 874
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	6 cut(s)	99, 169, 362, 862, 1064, 1101
SsiI	CCGC	2 cut(s)	493, 764
SspMI	CTAG	5 cut(s)	114, 213, 573, 635, 660
StyD4I	CCNGG	2 cut(s)	745, 1033
TaaI	ACNGT	2 cut(s)	147, 651
TaiI	ACGT	1 cut(s)	238
TasI	AATT	6 cut(s)	99, 169, 362, 862, 1064, 1101
TatI	WGTACW	1 cut(s)	1082
TauI	GCSGC	1 cut(s)	766
TfiI	GAWTC	3 cut(s)	83, 343, 898
Tru1I	TTAA	4 cut(s)	317, 437, 852, 861
Tru9I	TTAA	4 cut(s)	317, 437, 852, 861
TscAI	CASTG	3 cut(s)	152, 539, 627
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	2 cut(s)	479, 638
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	4 cut(s)	335, 458, 683, 1086
TspGWI	ACGGA	2 cut(s)	595, 710
TspRI	CASTG	3 cut(s)	152, 539, 627
Vha464I	CTTAAG	1 cut(s)	851
VneI	GTGCAC	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	749
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	1 cut(s)	1064
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	5 cut(s)	114, 213, 573, 635, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.