Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

10526501 .. 10527022

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGAAGATGGATACTGATGTTTGTGTGGTTTCTGTCAGCCCTGATGCCAAATATCTTTTGGTGGCTTTGGATACCACACTAAAGGTGTTCTATATGGATTCACTCAAACTTTTCCTAACCTTATATGGTCACAAGCTGCCAGTGCTATGTCTGGATGTCTCATCCGACGGAGATCTGATAGTGACTGGATCTGAAGACAAAAATGTGAAGATTTGGAGGCTAGATTTTGGTGACTGCCACAAATCAATGTTTGATCATAAGAGCAGTGTTCAGCGAGTACAATTTGTGCCAAATACCCATTACTTCGTCAGTGTTGGGCAAGATAAGCAAGTAAACTACTTGGTTGCTGATAAATTTGAGTTGCTTTTAGCTATGAAGGGACACCATGAGGGTGTTTGTTGCCTTGCTATTAGTAATTACCATGGTAATTTCTTTGTCACGGATCTCACGATCGAGCAATTCGCCGCTGGGATCGTACTGATGAGCCATTTTTTCTTGAGGAAGAGAGAGAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

173

Amino Acids

19.67

Weight (kDa)

6.69

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	3 - 118	9.1e-06	WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st	PF24817	3 - 140	2.3e-13	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	3 - 78	4.7e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	3 - 148	1.5e-60	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	4 - 141	3.2e-18	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	4 - 119	2.7e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	5 - 147	5.4e-22	WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	6 - 120	1.5e-08	MABP1/WDR62 second WD40 domain
WD40_CDC20-Fz	PF24807	7 - 140	2e-09	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	7 - 101	4.7e-13	THOC3 beta-propeller domain
Beta-prop_IFT122_1st	PF23381	9 - 106	1.3e-08	IFT122 first beta-propeller
Beta-prop_TEP1_2nd	PF25047	10 - 139	9.6e-08	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	16 - 137	4e-10	G protein beta WD-40 repeat protein
EIF3I	PF24805	22 - 109	1.4e-10	EIF3I
WD40_Prp19	PF24814	22 - 136	9e-16	Prp19 WD40 domain
NBCH_WD40	PF20426	24 - 136	1.1e-07	Neurobeachin beta propeller domain
WD40	PF00400	39 - 73	2.3e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	40 - 115	2.9e-07	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	49 - 148	1.3e-07	MABP1/WDR62 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	3 cut(s)	199, 453, 482
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	282, 480
AluBI	AGCT	2 cut(s)	139, 374
AluI	AGCT	2 cut(s)	139, 374
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	199, 453, 482
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	245
BaeI	ACNNNNGTAYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	1 cut(s)	4
BciVI	GTATCC	2 cut(s)	7, 67
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	224
BfuI	GTATCC	2 cut(s)	7, 67
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	140, 468
BlsI	GCNGC	2 cut(s)	141, 469
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	424
Bse1I	ACTGG	2 cut(s)	143, 193
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	2 cut(s)	163, 164
BseNI	ACTGG	2 cut(s)	143, 193
BseXI	GCAGC	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	396
Bsp143I	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	468
BspPI	GGATC	3 cut(s)	199, 453, 482
BsrI	ACTGG	2 cut(s)	143, 193
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
BssT1I	CCWWGG	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	500
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	163, 164
BstKTI	GATC	6 cut(s)	178, 194, 259, 448, 456, 477
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 328
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	175, 191, 445
BstYI	RGATCY	3 cut(s)	175, 191, 445
BsuI	GTATCC	2 cut(s)	7, 67
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	163, 164
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	3 cut(s)	150, 274, 319
Csp6I	GTAC	2 cut(s)	281, 479
CviAII	CATG	2 cut(s)	389, 425
CviJI	RGCY	6 cut(s)	42, 68, 139, 223, 374, 489
CviKI_1	RGCY	6 cut(s)	42, 68, 139, 223, 374, 489
CviQI	GTAC	2 cut(s)	281, 479
DpnI	GATC	6 cut(s)	177, 193, 258, 447, 455, 476
DpnII	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	2 cut(s)	392, 428
FaiI	YATR	9 cut(s)	96, 98, 127, 129, 151, 261, 377, 390, 426
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	2 cut(s)	388, 424
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	140, 468
FokI	GGATG	2 cut(s)	151, 170
Fsp4HI	GCNGC	2 cut(s)	140, 468
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	2 cut(s)	140, 468
GsaI	CCCAGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	392, 428
HinfI	GANTC	1 cut(s)	101
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	3 cut(s)	169, 180, 196
Hpy188III	TCNNGA	3 cut(s)	155, 451, 499
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 328
Hsp92II	CATG	2 cut(s)	392, 428
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
LpnPI	CCDG	5 cut(s)	57, 140, 156, 174, 456
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	4 cut(s)	131, 184, 233, 439
MalI	GATC	6 cut(s)	177, 193, 258, 447, 455, 476
MboI	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
MboII	GAAGA	5 cut(s)	16, 19, 209, 223, 517
MflI	RGATCY	3 cut(s)	175, 191, 445
MluCI	AATT	5 cut(s)	284, 356, 418, 430, 461
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	3 cut(s)	213, 385, 495
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	145, 328
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
NlaIII	CATG	2 cut(s)	392, 428
NmuCI	GTSAC	4 cut(s)	131, 184, 233, 439
PcsI	WCGNNNNNNNCGW	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	141, 469
Ple19I	CGATCG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	175, 191, 445
PvuI	CGATCG	1 cut(s)	456
RsaI	GTAC	2 cut(s)	282, 480
RsaNI	GTAC	2 cut(s)	281, 479
RseI	CAYNNNNRTG	1 cut(s)	393
SatI	GCNGC	2 cut(s)	140, 468
Sau3AI	GATC	6 cut(s)	175, 191, 256, 445, 453, 474
SetI	ASST	4 cut(s)	90, 125, 141, 376
SfaNI	GCATC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	5 cut(s)	284, 356, 418, 430, 461
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	424
TaqI	TCGA	1 cut(s)	456
TasI	AATT	5 cut(s)	284, 356, 418, 430, 461
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	3 cut(s)	150, 274, 319
TseFI	GTSAC	4 cut(s)	131, 184, 233, 439
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	4 cut(s)	131, 184, 233, 439
TspDTI	ATGAA	2 cut(s)	17, 392
TspGWI	ACGGA	2 cut(s)	186, 458
TspRI	CASTG	3 cut(s)	150, 274, 319
XapI	RAATTY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.