Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

44555448 .. 44562326

Gene Structure 6879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2757 bp

ATGGTGAAGTCGTACTTGCGATACGAGCAGGGTGCCGCCTTCGGCGTGATAGTTTCTGGCAATTCAAACATCGCCTACGACAGTTCCGGGAAGCACGTTTTTGCCCCGGGCCTGGAAAAGGTGGGCGTGTGGAACGTGCGACAAGGCATTTGCATCAAAACCTTAACTCCTTGTGCTGATGGATATTCGCCGCCTGTCACCTCCATCGCGGTCTCGCCTTCTTCTTCTTCTTCTTCTTCTCTGATAGCCGCTGGGTATGGAGATGGGAGCATTAGAATTTGGGACTCTCAGAATAAAATTTGTGAGACCACATTCTACGGTCATACGGGGGCCGTTAGTGTCTTACGGTACAACAAGACTGGAGATAGGCTGGTTTCTGGTGGCCAAGATAAGGACATTATATTGTGGGATGTGGAGAGGGGCGAGGGCATCTATCGCCTTCGCGGGCATGGGAATCAGGTCACTGATCTCGTCTTCTTGGACTGTTGTAAGAAACTCGTTAGTTCCTCAAAAGACAAATTTTTGAAGGTCTGGGATCTTGAAACCCCCCATTGCATGCAGACAATAAGTGACCACCATAGTGAAATTTGGTCCATAGATATCGATCCCGAAGAAAGATATTTGGTCTCTGGCTCTGCTGACTTGGAACTTAGGGTTTACACAATTAAGCATGACCTTAAAGCTTGCCAATCCACTTCTAATGGAACAGAAATTGCAGACTCTGGAGATCCATCCCCTCATAATAAATGGCAAGTTTTGAAGCTGTTTGGTGAATATCAGCGAAAAAGCAAGAACAGAGTTGCAACTGTGAGATTCAACAAGTCTGGAAATTTGCTGGCATGTCAAGAGGCAGGAAAGGCGGTACATATATTCAACGTACTGGATGAGGCTGAATCTACCCGTAAAGCAAACCGCAGGATTCGCCGGATCAAAAAGAAAAAGTCTGCCCAAGGGGAAGCTGAGGTGATGGAGGATCATGGAGCTGGAGAAGAGGGAAAGAGGCACGGGCTCATGTTCTCTGATGTTTTTCAACTTTTCCAAACTATCCGACCTGGCAAAAAGATATGTTCCATCTCTTTTTGTCCAAACCCTCCCAAGACTTCCCTAGCCACAATAGCTTTGTCTCTGAGCGATAATCTATGCGCGTTTTATTCTCTTGAGAGCGAAGCAACAAAACAAACACGCGCTATAGACCTCCACGGCCACCGATCATCTGTCACAAGTGTAGCGCTTAGCTCAGACAACACAGTTTTGATGTCAACCAGTCATAATGCAGCAAAGATCTGGAATCCAACCAATGGTTACTGCCTTGGAACTATTGACACAGGATTCGCCATGTGTGCTTTTATCCTTCCTTCTTGCAATAACAAGTTTGCACTTGTTGGAACCAAGGGTGGAACAATGGAAATTATTGACGTTGGGAGTGCAACTGTCACTGAAGTAGTAGAAGCACATGGTGGCTCTGTTCAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGGAGTCAAAGAAGATTCTAAGCGCCTGCTAGTGTCAAATGTAAGAATGAAGGAGATGGATACTGATGTTCGTGTGGTTTCTATCAGTCCTGATGCCAAATATCTTTTGGTGGCGTTGGATACCATAGTAAAGGTATTCTATATGGATTCACTCAAACTTTTCGTCACCTTATATGGTCACAAGCTGCCAGTGCTATGTCTCGATGTCTCATCCGATGGAGAGTTGATAGTGACTGGATCTCAAGACAAAAATGTGAAGATTTGGGGGCTAGATTTTGTACAATTTGTGCCAAATACCCATTACTTTGTTAGTGTTGGGGATGATAAGCAAGTAAACTACTGGGATGCTGATAAATTTGAGTTGCTTTTAACTATGAAGGGACACCATGAGGGTGTTTGTTGCCTCGCTATTAGTAACCGTGGTGATTTCTTTGTCACGGGATCTCATGATCGCTCAATTCGCCGCTGGGATCGTACTGATGAGCCATTTTTCCTTGAGGAAGAGAGGGAAAAACGGGAGTTGGAAAAGATGTACGAGTCTGACTTCAAGGATGAATATGAGAACAATTTTGCACTCAAGGAAAAGATCCCTGCAGAGGGAGCTGTGGCTTTTGCTGGGAAGAAAACTAAAGAAACAATTTCTTTGACCGACTCAATTGTTGCTAAACTAGAAATAGCATGGGAAGAATCAAAGCGACGAGCCAATTATGAGGCGGAAAAAGTCAGTGGAAAGCTGGTTGCTGAGTTTCAACCAAATCCTTTTATGCTAGGGCTGTCTCCTCCTGATTATTTTCTGCATGAACTTTTGAAGGTTAAGACAAGCGATTTGGAGTCGATGCTATTGGGGCTACCCTTCTCGGATGCCTTGAAGATTTTGTCTTTCTGCAAGGATGTTGATCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACATTGCTGCTGCAGATAATTTGTAATCAATTGATTTCCACTCCAGCTGTAAAACCAATATTGACCGGTTTAAAAGAGGTTCTTTATCCCAACTTAAAGGCAAAGAAGGATATCATTGGTTACAACCTTGCAGCAATGACTCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGATGCCATCTCCAAGCGTGGTGTAGGTGCAAGTTGGTATGGAAAGACAGAAGAAGGTAAATGCAAAAAAGTTCGAACATGTGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

918

Amino Acids

101.94

Weight (kDa)

6.78

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	19 - 190	1.9e-11	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	24 - 223	3.7e-26	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	29 - 231	4.5e-21	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	31 - 222	2.1e-67	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	39 - 224	2e-32	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	41 - 214	1.2e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	41 - 178	2.4e-11	WDR36/Utp21 first beta-propeller
Beta-prop_EML_2	PF23414	65 - 184	3.5e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	65 - 225	2.5e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	65 - 179	2.9e-13	WDR3 second beta-propeller domain
WDR90_beta-prop_4th	PF23342	68 - 150	3.3e-06	WDR90, 4th beta-propeller
Beta-prop_VPS8	PF23410	72 - 181	2.2e-06	Vps8 beta-propeller
WDR55	PF24796	76 - 236	2.8e-15	WDR55
WD40_MABP1-WDR62_2nd	PF24782	78 - 180	8.3e-09	MABP1/WDR62 second WD40 domain
Beta-prop_IFT140_1st	PF23383	80 - 139	2.3e-06	IFT140 first beta-propeller
Beta-prop_SCAP	PF24017	82 - 182	1.6e-11	SCAP Beta-propeller
WD40	PF00400	101 - 137	2e-06	WD domain, G-beta repeat
EIF3I	PF24805	105 - 190	1.4e-10	EIF3I
WD40_Gbeta	PF25391	107 - 226	1.1e-12	G protein beta WD-40 repeat protein
Beta-prop_Aladin	PF25460	111 - 230	3.9e-06	Aladin seven-bladed propeller
WD40_Prp19	PF24814	115 - 229	5.7e-20	Prp19 WD40 domain
Beta-prop_WDR41	PF25178	122 - 226	6.2e-09	WDR41
EIF3I	PF24805	147 - 224	4.4e-08	EIF3I
Beta-prop_WDR3_2nd	PF25172	175 - 291	2.9e-07	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	262 - 513	4.9e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	354 - 553	4.2e-14	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	370 - 514	1.1e-10	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	372 - 552	1.1e-10	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	372 - 603	3.8e-15	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	375 - 605	3.6e-24	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	406 - 677	1.6e-93	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	448 - 608	1.1e-10	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	455 - 605	7.8e-14	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	455 - 605	4.1e-13	WDHD1 first WD40 domain
WDR55	PF24796	464 - 604	1.6e-08	WDR55
Beta-prop_WDR5	PF25175	483 - 604	6e-13	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	498 - 605	6.8e-09	TEP-1 second beta-propeller
Beta-prop_EML_2	PF23414	529 - 605	9.1e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	530 - 672	3e-18	WDR3 first beta-propeller domain
WD40	PF00400	569 - 603	9.6e-09	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	602 - 672	4.6e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	605 - 674	5.7e-12	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	608 - 672	3.4e-09	THOC3 beta-propeller domain
WD40_Prp19	PF24814	613 - 677	2.7e-08	Prp19 WD40 domain
WD40	PF00400	635 - 672	1.3e-08	WD domain, G-beta repeat
Utp12	PF04003	778 - 878	9.9e-15	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	1298
AccII	CGCG	4 cut(s)	209, 444, 1145, 1185
AciI	CCGC	9 cut(s)	36, 191, 209, 249, 444, 860, 913, 2008, 2258
AclWI	GGATC	9 cut(s)	543, 599, 722, 935, 981, 1789, 1993, 2022, 2125
AcoI	YGGCCR	2 cut(s)	382, 1201
AcsI	RAATTY	8 cut(s)	276, 297, 518, 585, 829, 1482, 1898, 2462
AcuI	CTGAAG	1 cut(s)	1458
AdeI	CACNNNGTG	1 cut(s)	1457
AfaI	GTAC	7 cut(s)	14, 350, 864, 879, 1824, 2020, 2078
AfeI	AGCGCT	1 cut(s)	1230
AfiI	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1298, 2140, 2141
AflIII	ACRYGT	1 cut(s)	2744
AgeI	ACCGGT	1 cut(s)	2546
AjnI	CCWGG	3 cut(s)	111, 1051, 2471
AleI	CACNNNNGTG	1 cut(s)	579
Alw26I	GTCTC	7 cut(s)	217, 299, 631, 1128, 1748, 1756, 2325
AlwI	GGATC	9 cut(s)	543, 599, 722, 935, 981, 1789, 1993, 2022, 2125
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	106
Aor51HI	AGCGCT	1 cut(s)	1230
AoxI	GGCC	4 cut(s)	109, 330, 382, 1201
ApeKI	GCWGC	5 cut(s)	1274, 1729, 2488, 2491, 2612
ApoI	RAATTY	8 cut(s)	276, 297, 518, 585, 829, 1482, 1898, 2462
ArsI	GACNNNNNNTTYG	8 cut(s)	132, 164, 1313, 1345, 1692, 1724, 2353, 2385
AsiGI	ACCGGT	1 cut(s)	2546
AspLEI	GCGC	4 cut(s)	1145, 1187, 1231, 1569
AspS9I	GGNCC	3 cut(s)	109, 330, 591
AsuC2I	CCSGG	3 cut(s)	88, 107, 108
AsuHPI	GGTGA	6 cut(s)	16, 190, 782, 976, 1702, 1979
AsuII	TTCGAA	1 cut(s)	2740
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	591
BaeI	ACNNNNGTAYC	4 cut(s)	1596, 1629, 1656, 1689
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	1011
BbsI	GAAGAC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	960
BbvI	GCAGC	5 cut(s)	1286, 1716, 2475, 2478, 2624
BceAI	ACGGC	2 cut(s)	317, 1216
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	3 cut(s)	113, 1053, 2473
BciVI	GTATCC	2 cut(s)	1597, 1657
BcnI	CCSGG	3 cut(s)	88, 107, 108
BcoDI	GTCTC	7 cut(s)	217, 299, 631, 1128, 1748, 1756, 2325
BfaI	CTAG	5 cut(s)	1106, 1574, 1814, 2213, 2312
BfmI	CTRYAG	3 cut(s)	1188, 2136, 2492
BfoI	RGCGCY	2 cut(s)	1232, 1570
BfuI	GTATCC	2 cut(s)	1597, 1657
BglII	AGATCT	1 cut(s)	1281
BisI	GCNGC	9 cut(s)	36, 191, 249, 1275, 1730, 2008, 2489, 2492, 2613
BlpI	GCTNAGC	1 cut(s)	1232
BlsI	GCNGC	9 cut(s)	37, 192, 250, 1276, 1731, 2009, 2490, 2493, 2614
Bme1390I	CCNGG	6 cut(s)	88, 107, 108, 113, 1053, 2473
Bme18I	GGWCC	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	109, 330, 591
BmiI	GGNNCC	3 cut(s)	34, 331, 1387
BmrFI	CCNGG	6 cut(s)	88, 107, 108, 113, 1053, 2473
BmrI	ACTGGG	1 cut(s)	1894
BmsI	GCATC	7 cut(s)	162, 438, 1627, 1879, 2370, 2395, 2659
BmuI	ACTGGG	1 cut(s)	1894
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	4 cut(s)	381, 744, 1005, 2508
Bpu10I	CCTNAGC	1 cut(s)	960
Bpu1102I	GCTNAGC	1 cut(s)	1232
Bpu14I	TTCGAA	1 cut(s)	2740
BpuEI	CTTGAG	4 cut(s)	1178, 1770, 2060, 2105
BpuMI	CCSGG	3 cut(s)	88, 107, 108
Bsa29I	ATCGAT	1 cut(s)	603
BsaBI	GATNNNNATC	2 cut(s)	603, 2439
BsaI	GGTCTC	3 cut(s)	217, 299, 631
BsaJI	CCNNGG	8 cut(s)	105, 106, 949, 1198, 1309, 1389, 1963, 2472
BsaWI	WCCGGW	1 cut(s)	2546
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1298, 2140, 2141
Bse118I	RCCGGY	1 cut(s)	2546
Bse1I	ACTGG	6 cut(s)	364, 885, 1263, 1733, 1783, 1889
Bse3DI	GCAATG	3 cut(s)	550, 2483, 2622
Bse8I	GATNNNNATC	2 cut(s)	603, 2439
BseBI	CCWGG	3 cut(s)	113, 1053, 2473
BseCI	ATCGAT	1 cut(s)	603
BseDI	CCNNGG	8 cut(s)	105, 106, 949, 1198, 1309, 1389, 1963, 2472
BseGI	GGATG	9 cut(s)	415, 731, 889, 1754, 1870, 1894, 2101, 2410, 2440
BseJI	GATNNNNATC	2 cut(s)	603, 2439
BseLI	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1298, 2140, 2141
BseMI	GCAATG	3 cut(s)	550, 2483, 2622
BseMII	CTCAG	6 cut(s)	302, 951, 1118, 1251, 1530, 2277
BseNI	ACTGG	6 cut(s)	364, 885, 1263, 1733, 1783, 1889
BseRI	GAGGAG	1 cut(s)	2313
BseXI	GCAGC	5 cut(s)	1286, 1716, 2475, 2478, 2624
BseYI	CCCAGC	3 cut(s)	251, 2010, 2159
Bsh1236I	CGCG	4 cut(s)	209, 444, 1145, 1185
BshFI	GGCC	4 cut(s)	111, 332, 384, 1203
BshNI	GGYRCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	2546
BshVI	ATCGAT	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	4 cut(s)	87, 107, 925, 2547
BslFI	GGGAC	2 cut(s)	296, 1938
BslI	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1298, 2140, 2141
BsmAI	GTCTC	7 cut(s)	217, 299, 631, 1128, 1748, 1756, 2325
BsmFI	GGGAC	2 cut(s)	296, 1938
BsnI	GGCC	4 cut(s)	111, 332, 384, 1203
Bso31I	GGTCTC	3 cut(s)	217, 299, 631
BsoBI	CYCGRG	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	2740
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp1407I	TGTACA	1 cut(s)	1822
Bsp1720I	GCTNAGC	1 cut(s)	1232
BspACI	CCGC	9 cut(s)	36, 191, 209, 249, 444, 860, 913, 2008, 2258
BspANI	GGCC	4 cut(s)	111, 332, 384, 1203
BspCNI	CTCAG	6 cut(s)	301, 952, 1119, 1250, 1529, 2278
BspDI	ATCGAT	1 cut(s)	603
BspFNI	CGCG	4 cut(s)	209, 444, 1145, 1185
BspHI	TCATGA	1 cut(s)	1990
BspLI	GGNNCC	3 cut(s)	34, 331, 1387
BspMAI	CTGCAG	2 cut(s)	2140, 2496
BspPI	GGATC	9 cut(s)	543, 599, 722, 935, 981, 1789, 1993, 2022, 2125
BspT104I	TTCGAA	1 cut(s)	2740
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	3 cut(s)	217, 299, 631
BsrDI	GCAATG	3 cut(s)	550, 2483, 2622
BsrFI	RCCGGY	1 cut(s)	2546
BsrGI	TGTACA	1 cut(s)	1822
BsrI	ACTGG	6 cut(s)	364, 885, 1263, 1733, 1783, 1889
BssAI	RCCGGY	1 cut(s)	2546
BssECI	CCNNGG	8 cut(s)	105, 106, 949, 1198, 1309, 1389, 1963, 2472
BssT1I	CCWWGG	3 cut(s)	949, 1309, 1389
Bst2UI	CCWGG	3 cut(s)	113, 1053, 2473
Bst4CI	ACNGT	8 cut(s)	83, 320, 348, 485, 808, 1249, 1432, 1964
Bst6I	CTCTTC	2 cut(s)	984, 2040
BstAUI	TGTACA	1 cut(s)	1822
BstBI	TTCGAA	1 cut(s)	2740
BstC8I	GCNNGC	5 cut(s)	446, 557, 685, 837, 1571
BstDEI	CTNAG	9 cut(s)	288, 650, 960, 1127, 1232, 1237, 1516, 1563, 2286
BstDSI	CCRYGG	2 cut(s)	1198, 1963
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	9 cut(s)	415, 731, 889, 1754, 1870, 1894, 2101, 2410, 2440
BstFNI	CGCG	4 cut(s)	209, 444, 1145, 1185
BstH2I	RGCGCY	2 cut(s)	1232, 1570
BstHHI	GCGC	4 cut(s)	1145, 1187, 1231, 1569
BstMAI	GTCTC	7 cut(s)	217, 299, 631, 1128, 1748, 1756, 2325
BstNI	CCWGG	3 cut(s)	113, 1053, 2473
BstNSI	RCATGY	3 cut(s)	559, 843, 2748
BstSCI	CCNGG	6 cut(s)	86, 105, 106, 111, 1051, 2471
BstSFI	CTRYAG	3 cut(s)	1188, 2136, 2492
BstUI	CGCG	4 cut(s)	209, 444, 1145, 1185
BstV1I	GCAGC	5 cut(s)	1286, 1716, 2475, 2478, 2624
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	6 cut(s)	535, 727, 1281, 1781, 1985, 2130
BstYI	RGATCY	6 cut(s)	535, 727, 1281, 1781, 1985, 2130
Bsu15I	ATCGAT	1 cut(s)	603
BsuI	GTATCC	2 cut(s)	1597, 1657
BsuRI	GGCC	4 cut(s)	111, 332, 384, 1203
BsuTUI	ATCGAT	1 cut(s)	603
BtgI	CCRYGG	2 cut(s)	1198, 1963
BtgZI	GCGATG	2 cut(s)	55, 190
BtsCI	GGATG	9 cut(s)	415, 731, 889, 1754, 1870, 1894, 2101, 2410, 2440
BtsIMutI	CAGTG	4 cut(s)	462, 1434, 1740, 2275
Cac8I	GCNNGC	5 cut(s)	446, 557, 685, 837, 1571
CaiI	CAGNNNCTG	1 cut(s)	722
CciI	TCATGA	1 cut(s)	1990
CfoI	GCGC	4 cut(s)	1145, 1187, 1231, 1569
Cfr10I	RCCGGY	1 cut(s)	2546
Cfr13I	GGNCC	3 cut(s)	109, 330, 591
Cfr9I	CCCGGG	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	603
Csp6I	GTAC	7 cut(s)	13, 349, 863, 878, 1823, 2019, 2077
CspAI	ACCGGT	1 cut(s)	2546
CviQI	GTAC	7 cut(s)	13, 349, 863, 878, 1823, 2019, 2077
DdeI	CTNAG	9 cut(s)	288, 650, 960, 1127, 1232, 1237, 1516, 1563, 2286
DraI	TTTAAA	1 cut(s)	2553
DraIII	CACNNNGTG	1 cut(s)	1457
EaeI	YGGCCR	2 cut(s)	382, 1201
Eam1104I	CTCTTC	2 cut(s)	984, 2040
EarI	CTCTTC	2 cut(s)	984, 2040
EciI	GGCGGA	1 cut(s)	2273
Eco130I	CCWWGG	3 cut(s)	949, 1309, 1389
Eco24I	GRGCYC	1 cut(s)	1011
Eco31I	GGTCTC	3 cut(s)	217, 299, 631
Eco32I	GATATC	2 cut(s)	601, 2593
Eco47I	GGWCC	1 cut(s)	591
Eco47III	AGCGCT	1 cut(s)	1230
Eco57I	CTGAAG	1 cut(s)	1458
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	1482, 2462
EcoRII	CCWGG	3 cut(s)	111, 1051, 2471
EcoRV	GATATC	2 cut(s)	601, 2593
EcoT14I	CCWWGG	3 cut(s)	949, 1309, 1389
EcoT38I	GRGCYC	1 cut(s)	1011
ErhI	CCWWGG	3 cut(s)	949, 1309, 1389
FalI	AAGNNNNNCTT	3 cut(s)	31, 2547, 2579
FaqI	GGGAC	2 cut(s)	296, 1938
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	9 cut(s)	36, 191, 249, 1275, 1730, 2008, 2489, 2492, 2613
FokI	GGATG	9 cut(s)	422, 718, 896, 1741, 1877, 1901, 2108, 2417, 2447
FriOI	GRGCYC	1 cut(s)	1011
Fsp4HI	GCNGC	9 cut(s)	36, 191, 249, 1275, 1730, 2008, 2489, 2492, 2613
FspBI	CTAG	5 cut(s)	1106, 1574, 1814, 2213, 2312
GlaI	GCGC	4 cut(s)	1144, 1186, 1230, 1568
GluI	GCNGC	9 cut(s)	36, 191, 249, 1275, 1730, 2008, 2489, 2492, 2613
GsaI	CCCAGC	3 cut(s)	255, 2014, 2163
GsuI	CTGGAG	4 cut(s)	381, 744, 1005, 2508
HaeII	RGCGCY	2 cut(s)	1232, 1570
HaeIII	GGCC	4 cut(s)	111, 332, 384, 1203
HapII	CCGG	4 cut(s)	87, 107, 925, 2547
HhaI	GCGC	4 cut(s)	1145, 1187, 1231, 1569
Hin6I	GCGC	4 cut(s)	1143, 1185, 1229, 1567
HinP1I	GCGC	4 cut(s)	1143, 1185, 1229, 1567
HincII	GTYRAC	1 cut(s)	1260
HindII	GTYRAC	1 cut(s)	1260
HindIII	AAGCTT	1 cut(s)	681
HpaII	CCGG	4 cut(s)	87, 107, 925, 2547
HphI	GGTGA	6 cut(s)	16, 190, 782, 976, 1702, 1979
Hpy166II	GTNNAC	3 cut(s)	658, 1260, 1879
Hpy8I	GTNNAC	3 cut(s)	658, 1260, 1879
Hpy99I	CGWCG	1 cut(s)	2244
HpyCH4III	ACNGT	8 cut(s)	83, 320, 348, 485, 808, 1249, 1432, 1964
HpyCH4IV	ACGT	5 cut(s)	96, 135, 876, 1416, 2446
HpyF3I	CTNAG	9 cut(s)	288, 650, 960, 1127, 1232, 1237, 1516, 1563, 2286
HpySE526I	ACGT	5 cut(s)	96, 135, 876, 1416, 2446
HspAI	GCGC	4 cut(s)	1143, 1185, 1229, 1567
LmnI	GCTCC	3 cut(s)	267, 980, 2144
Lsp1109I	GCAGC	5 cut(s)	1286, 1716, 2475, 2478, 2624
LweI	GCATC	7 cut(s)	162, 438, 1627, 1879, 2370, 2395, 2659
MaeI	CTAG	5 cut(s)	1106, 1574, 1814, 2213, 2312
MaeII	ACGT	5 cut(s)	96, 135, 876, 1416, 2446
MfeI	CAATTG	3 cut(s)	2199, 2510, 2633
MflI	RGATCY	6 cut(s)	535, 727, 1281, 1781, 1985, 2130
MhlI	GDGCHC	1 cut(s)	1011
MlsI	TGGCCA	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	7 cut(s)	278, 713, 1557, 2090, 2189, 2384, 2614
MmeI	TCCRAC	5 cut(s)	1072, 1316, 1363, 1641, 2046
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	8 cut(s)	164, 666, 678, 1530, 1913, 2358, 2552, 2576
MslI	CAYNNNNRTG	2 cut(s)	579, 1935
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	3 cut(s)	251, 2010, 2528
MspI	CCGG	4 cut(s)	87, 107, 925, 2547
MspR9I	CCNGG	6 cut(s)	88, 107, 108, 113, 1053, 2473
MunI	CAATTG	3 cut(s)	2199, 2510, 2633
MvaI	CCWGG	3 cut(s)	113, 1053, 2473
MvnI	CGCG	4 cut(s)	209, 444, 1145, 1185
NciI	CCSGG	3 cut(s)	88, 107, 108
NlaIV	GGNNCC	3 cut(s)	34, 331, 1387
NspI	RCATGY	3 cut(s)	559, 843, 2748
NspV	TTCGAA	1 cut(s)	2740
OliI	CACNNNNGTG	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	1990
PciI	ACATGT	1 cut(s)	2744
PflMI	CCANNNNNTGG	1 cut(s)	1298
PfoI	TCCNGGA	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	2546
PkrI	GCNGC	9 cut(s)	37, 192, 250, 1276, 1731, 2009, 2490, 2493, 2614
PleI	GAGTC	7 cut(s)	278, 713, 1556, 2089, 2189, 2383, 2614
PpsI	GAGTC	7 cut(s)	278, 713, 1556, 2089, 2189, 2383, 2614
PscI	ACATGT	1 cut(s)	2744
Psp6I	CCWGG	3 cut(s)	111, 1051, 2471
PspFI	CCCAGC	3 cut(s)	251, 2010, 2159
PspGI	CCWGG	3 cut(s)	111, 1051, 2471
PspN4I	GGNNCC	3 cut(s)	34, 331, 1387
PspPI	GGNCC	3 cut(s)	109, 330, 591
PstI	CTGCAG	2 cut(s)	2140, 2496
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	6 cut(s)	535, 727, 1281, 1781, 1985, 2130
PvuII	CAGCTG	1 cut(s)	2528
RsaI	GTAC	7 cut(s)	14, 350, 864, 879, 1824, 2020, 2078
RsaNI	GTAC	7 cut(s)	13, 349, 863, 878, 1823, 2019, 2077
RseI	CAYNNNNRTG	2 cut(s)	579, 1935
SaqAI	TTAA	8 cut(s)	164, 666, 678, 1530, 1913, 2358, 2552, 2576
SatI	GCNGC	9 cut(s)	36, 191, 249, 1275, 1730, 2008, 2489, 2492, 2613
Sau96I	GGNCC	3 cut(s)	109, 330, 591
SchI	GAGTC	7 cut(s)	278, 713, 1557, 2090, 2189, 2384, 2614
ScrFI	CCNGG	6 cut(s)	88, 107, 108, 113, 1053, 2473
SduI	GDGCHC	1 cut(s)	1011
SfaNI	GCATC	7 cut(s)	162, 438, 1627, 1879, 2370, 2395, 2659
SfcI	CTRYAG	3 cut(s)	1188, 2136, 2492
SfuI	TTCGAA	1 cut(s)	2740
SinI	GGWCC	1 cut(s)	591
SmaI	CCCGGG	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	579, 1935
SmlI	CTYRAG	4 cut(s)	1157, 1785, 2039, 2120
SmoI	CTYRAG	4 cut(s)	1157, 1785, 2039, 2120
SphI	GCATGC	1 cut(s)	559
SsiI	CCGC	9 cut(s)	36, 191, 209, 249, 444, 860, 913, 2008, 2258
SspI	AATATT	1 cut(s)	2541
SspMI	CTAG	5 cut(s)	1106, 1574, 1814, 2213, 2312
StyD4I	CCNGG	6 cut(s)	86, 105, 106, 111, 1051, 2471
StyI	CCWWGG	3 cut(s)	949, 1309, 1389
TaaI	ACNGT	8 cut(s)	83, 320, 348, 485, 808, 1249, 1432, 1964
TaiI	ACGT	5 cut(s)	99, 138, 879, 1419, 2449
TaqI	TCGA	4 cut(s)	603, 1746, 2378, 2740
TaqII	GACCGA	1 cut(s)	2207
TatI	WGTACW	1 cut(s)	1822
TauI	GCSGC	4 cut(s)	38, 193, 251, 2010
Tru1I	TTAA	8 cut(s)	164, 666, 678, 1530, 1913, 2358, 2552, 2576
Tru9I	TTAA	8 cut(s)	164, 666, 678, 1530, 1913, 2358, 2552, 2576
TscAI	CASTG	4 cut(s)	469, 1441, 1740, 2275
TseI	GCWGC	5 cut(s)	1274, 1729, 2488, 2491, 2612
TspDTI	ATGAA	6 cut(s)	1506, 1607, 1934, 2112, 2358, 2455
TspMI	CCCGGG	1 cut(s)	106
TspRI	CASTG	4 cut(s)	469, 1441, 1740, 2275
Van91I	CCANNNNNTGG	1 cut(s)	1298
VpaK11BI	GGWCC	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	8 cut(s)	276, 297, 518, 585, 829, 1482, 1898, 2462
XceI	RCATGY	3 cut(s)	559, 843, 2748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1648
XmaI	CCCGGG	1 cut(s)	106
XspI	CTAG	5 cut(s)	1106, 1574, 1814, 2213, 2312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.