Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037201.1

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 760

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037201.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

gttacggatcttgtcttcttggattctggaaagaaactcgttagttcctcaaaagataaattgttgaaagtatgggatcttgatacccagcattgcatgcagacaataagtggccaccatagtgaaatatggtctatagatagtgatccagaagaaagatatttagtctctgggtctgcagacgcggagcttagattttacacaattaagcatgactcggaagatggccaatccatctctaatgggaatggaactgtaactgcagggagtggagatctaccggttcatactaaatgggaagttttgaagatgtttggtgagttaccacggaaaaacgagggtagagtcgcaactgtgagattcaacaagtccggaaatttgctggcttgtcaggtggcgggaaagacagtagatatattccatgtactggatgaggatgaatccaagcggaaagcaaaacgcaggcttcaccggaagaaagaaaaaaaatctgccaagggggcacctcaggtgttagaaaatggagacacagatcatgtagttggagaagaaggaaatagtcctgctgttacagtccttgatgtttttaagcttcttcaaactattcgagcgagcaaaaagatatgttccatctcattctgtccaaacactacaaagagttcgatggctacactagctttgtcattgaacaataatttgttggaattttattctatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

239

Amino Acids

26.42

Weight (kDa)

7.82

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	3 cut(s)	185, 398, 448
AclWI	GGATC	3 cut(s)	15, 84, 140
AcoI	YGGCCR	2 cut(s)	112, 226
AcsI	RAATTY	2 cut(s)	376, 704
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	5 cut(s)	67, 307, 364, 599, 688
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	190, 592, 677
AluI	AGCT	3 cut(s)	190, 592, 677
Alw26I	GTCTC	2 cut(s)	172, 519
AlwI	GGATC	3 cut(s)	15, 84, 140
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	2 cut(s)	112, 226
ApoI	RAATTY	2 cut(s)	376, 704
AsiGI	ACCGGT	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	329, 461
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	505
BalI	TGGCCA	2 cut(s)	114, 228
BanI	GGYRCC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	7
BccI	CCATC	4 cut(s)	218, 242, 638, 658
BcoDI	GTCTC	2 cut(s)	172, 519
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	3 cut(s)	135, 177, 261
BglI	GCCNNNNNGGC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	326, 495
BsaWI	WCCGGW	3 cut(s)	280, 371, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	432
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	326, 495
BseGI	GGATG	2 cut(s)	436, 442
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	505
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	114, 228
BshNI	GGYRCC	1 cut(s)	502
BshTI	ACCGGT	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	281, 372, 472
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	172, 519
BsnI	GGCC	2 cut(s)	114, 228
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	5 cut(s)	7, 76, 145, 274, 532
BspACI	CCGC	3 cut(s)	185, 398, 448
BspANI	GGCC	2 cut(s)	114, 228
BspCNI	CTCAG	1 cut(s)	520
BspEI	TCCGGA	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	504
BspMAI	CTGCAG	2 cut(s)	181, 265
BspPI	GGATC	3 cut(s)	15, 84, 140
BspT107I	GGYRCC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	326, 495
BssMI	GATC	5 cut(s)	7, 76, 145, 274, 532
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	4 cut(s)	256, 355, 409, 574
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	98, 384, 464, 613
BstDEI	CTNAG	2 cut(s)	191, 507
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	436, 442
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	5 cut(s)	10, 79, 148, 277, 535
BstMAI	GTCTC	2 cut(s)	172, 519
BstMBI	GATC	5 cut(s)	7, 76, 145, 274, 532
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 500, 674
BstNSI	RCATGY	1 cut(s)	100
BstSFI	CTRYAG	3 cut(s)	135, 177, 261
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	7
BstX2I	RGATCY	3 cut(s)	7, 76, 274
BstYI	RGATCY	3 cut(s)	7, 76, 274
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	114, 228
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	436, 442
Cac8I	GCNNGC	4 cut(s)	98, 384, 464, 613
Cfr10I	RCCGGY	1 cut(s)	280
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	425
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	4 cut(s)	97, 212, 422, 536
CviJI	RGCY	8 cut(s)	114, 190, 228, 386, 466, 592, 668, 677
CviKI_1	RGCY	8 cut(s)	114, 190, 228, 386, 466, 592, 668, 677
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	2 cut(s)	191, 507
DpnI	GATC	5 cut(s)	9, 78, 147, 276, 534
DpnII	GATC	5 cut(s)	7, 76, 145, 274, 532
EaeI	YGGCCR	2 cut(s)	112, 226
Eco130I	CCWWGG	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	4 cut(s)	100, 215, 425, 539
FatI	CATG	4 cut(s)	96, 211, 421, 535
FauI	CCCGC	1 cut(s)	391
FokI	GGATG	2 cut(s)	443, 449
FspBI	CTAG	1 cut(s)	674
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	114, 228
HapII	CCGG	3 cut(s)	281, 372, 472
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	100, 215, 425, 539
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	23, 215, 345, 360, 440
HpaII	CCGG	3 cut(s)	281, 372, 472
HphI	GGTGA	2 cut(s)	329, 461
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	4 cut(s)	27, 80, 149, 372
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	4 cut(s)	256, 355, 409, 574
HpyCH4V	TGCA	4 cut(s)	96, 100, 179, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 500, 674
HpyF3I	CTNAG	2 cut(s)	191, 507
Hsp92II	CATG	4 cut(s)	100, 215, 425, 539
Kpn2I	TCCGGA	1 cut(s)	371
Kzo9I	GATC	5 cut(s)	7, 76, 145, 274, 532
LmnI	GCTCC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	674
MaeIII	GTNAC	3 cut(s)	256, 321, 568
MalI	GATC	5 cut(s)	9, 78, 147, 276, 534
MboI	GATC	5 cut(s)	7, 76, 145, 274, 532
MboII	GAAGA	7 cut(s)	7, 164, 233, 319, 487, 560, 587
MflI	RGATCY	3 cut(s)	7, 76, 274
MhlI	GDGCHC	1 cut(s)	505
MlsI	TGGCCA	2 cut(s)	114, 228
MluCI	AATT	5 cut(s)	59, 204, 376, 694, 704
MluNI	TGGCCA	2 cut(s)	114, 228
MlyI	GAGTC	2 cut(s)	209, 354
MmeI	TCCRAC	2 cut(s)	523, 681
MnlI	CCTC	4 cut(s)	58, 331, 427, 516
Mox20I	TGGCCA	2 cut(s)	114, 228
MroI	TCCGGA	1 cut(s)	371
MscI	TGGCCA	2 cut(s)	114, 228
MseI	TTAA	2 cut(s)	207, 588
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	2 cut(s)	114, 228
MspI	CCGG	3 cut(s)	281, 372, 472
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	97, 500, 674
NdeII	GATC	5 cut(s)	7, 76, 145, 274, 532
NlaIII	CATG	4 cut(s)	100, 215, 425, 539
NlaIV	GGNNCC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	23, 360, 440
PflMI	CCANNNNNTGG	1 cut(s)	427
PinAI	ACCGGT	1 cut(s)	280
PleI	GAGTC	2 cut(s)	209, 353
PpsI	GAGTC	2 cut(s)	209, 353
PspFI	CCCAGC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	504
PstI	CTGCAG	2 cut(s)	181, 265
PsuI	RGATCY	3 cut(s)	7, 76, 274
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	207, 588
Sau3AI	GATC	5 cut(s)	7, 76, 145, 274, 532
SchI	GAGTC	2 cut(s)	209, 354
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	6 cut(s)	192, 396, 508, 513, 594, 679
SfcI	CTRYAG	3 cut(s)	135, 177, 261
SmiMI	CAYNNNNRTG	1 cut(s)	120
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	5 cut(s)	59, 204, 376, 694, 704
SsiI	CCGC	3 cut(s)	185, 398, 448
SspMI	CTAG	1 cut(s)	674
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	4 cut(s)	256, 355, 409, 574
TaqI	TCGA	2 cut(s)	607, 662
TasI	AATT	5 cut(s)	59, 204, 376, 694, 704
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	3 cut(s)	23, 360, 440
Tru1I	TTAA	2 cut(s)	207, 588
Tru9I	TTAA	2 cut(s)	207, 588
TspDTI	ATGAA	2 cut(s)	275, 453
TspGWI	ACGGA	2 cut(s)	20, 343
Van91I	CCANNNNNTGG	1 cut(s)	427
XapI	RAATTY	2 cut(s)	376, 704
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.