Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Forward (+)

9139971 .. 9143935

Gene Structure 3965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCAAGAAACTAAAGAACTAAAGAAGATGATAATCCCAAATGGTGGTGCAGAACACCACAAAGAGTGCCACGGCACTAATAGAATCCAAGACACTGCCAAAACAGATCCAGGGATTCAAGAGGAGCGGAGAGAAAGGAATCATGGTGAAGTCGTACCTGCGATACGAGCAGGGTGCCACCTGCGTCATAGTTTCTGGCAATCAAACATTGCCTACGACAGTTCCGGGAAGCACCTTTTTTCCCCGGGCCTGGAAAAGGTGGGCGTCTGGAACGTGCGACAAGGCATTTGCGTCAAAACCCTAACTCCTTCTGCTGTTGGATATTCTCCGGGGCCAGTCACCTCCATCGCGGTCTCGCCTTCTTCTTCTCTGATAGCTACCGGGTATGGACATGGTAGCATTAGAATTTGGGACTCCCACAATAAAATATGTGAGACCATATTCAGCGGTCATAGGGGGGACGTTACTGCCTTATGGTACAACAAGATTGGAGATAGGCCGGTTTCTGGAGGCCAAGATAAGGACATTATATTGTGGGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

181

Amino Acids

19.92

Weight (kDa)

8.36

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	63 - 181	6e-11	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	68 - 181	1.6e-13	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	70 - 180	3.9e-07	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	77 - 180	2.1e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	78 - 181	1.3e-26	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	82 - 180	6.5e-08	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	85 - 180	2.8e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	88 - 180	9.7e-08	Prp19 WD40 domain
Beta-prop_VPS8	PF23410	100 - 152	1.8e-06	Vps8 beta-propeller
WD40	PF00400	107 - 138	3.2e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	189
Acc36I	ACCTGC	2 cut(s)	166, 189
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	350
AciI	CCGC	3 cut(s)	127, 350, 447
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	156, 479
AfiI	CCNNNNNNNGG	5 cut(s)	44, 250, 256, 506, 520
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	109, 249
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw26I	GTCTC	2 cut(s)	358, 428
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	4 cut(s)	247, 332, 497, 511
ApoI	RAATTY	1 cut(s)	405
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspS9I	GGNCC	2 cut(s)	247, 332
AsuC2I	CCSGG	5 cut(s)	226, 245, 246, 330, 382
AsuHPI	GGTGA	2 cut(s)	158, 331
AvaI	CYCGRG	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	174
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	2 cut(s)	111, 251
BcnI	CCSGG	5 cut(s)	226, 245, 246, 330, 382
BcoDI	GTCTC	2 cut(s)	358, 428
BfuAI	ACCTGC	2 cut(s)	166, 189
Bme1390I	CCNGG	7 cut(s)	111, 226, 245, 246, 251, 330, 382
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	247, 332
BmiI	GGNNCC	2 cut(s)	176, 333
BmrFI	CCNGG	7 cut(s)	111, 226, 245, 246, 251, 330, 382
BpmI	CTGGAG	1 cut(s)	528
BpuMI	CCSGG	5 cut(s)	226, 245, 246, 330, 382
BsaBI	GATNNNNATC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	2 cut(s)	358, 428
BsaJI	CCNNGG	5 cut(s)	70, 110, 243, 244, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 250, 256, 506, 520
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	111, 251
BseDI	CCNNGG	5 cut(s)	70, 110, 243, 244, 329
BseGI	GGATG	1 cut(s)	544
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	5 cut(s)	44, 250, 256, 506, 520
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	4 cut(s)	249, 334, 499, 513
BshNI	GGYRCC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	5 cut(s)	225, 245, 329, 381, 500
BslFI	GGGAC	2 cut(s)	425, 473
BslI	CCNNNNNNNGG	5 cut(s)	44, 250, 256, 506, 520
BsmAI	GTCTC	2 cut(s)	358, 428
BsmFI	GGGAC	2 cut(s)	425, 473
BsnI	GGCC	4 cut(s)	249, 334, 499, 513
Bso31I	GGTCTC	2 cut(s)	358, 428
BsoBI	CYCGRG	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	3 cut(s)	127, 350, 447
BspANI	GGCC	4 cut(s)	249, 334, 499, 513
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	176, 333
BspMI	ACCTGC	2 cut(s)	166, 189
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	174
BspTNI	GGTCTC	2 cut(s)	358, 428
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	5 cut(s)	70, 110, 243, 244, 329
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	111, 251
Bst4CI	ACNGT	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	70
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	358, 428
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	111, 251
BstSCI	CCNGG	7 cut(s)	109, 224, 243, 244, 249, 328, 380
BstUI	CGCG	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	4 cut(s)	249, 334, 499, 513
BtgI	CCRYGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	544
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	2 cut(s)	166, 189
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	247, 332
Cfr9I	CCCGGG	1 cut(s)	244
CseI	GACGC	3 cut(s)	173, 253, 280
Csp6I	GTAC	2 cut(s)	155, 478
CviAII	CATG	2 cut(s)	143, 392
CviJI	RGCY	5 cut(s)	249, 334, 377, 499, 513
CviKI_1	RGCY	5 cut(s)	249, 334, 377, 499, 513
CviQI	GTAC	2 cut(s)	155, 478
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco31I	GGTCTC	2 cut(s)	358, 428
Eco88I	CYCGRG	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	109, 249
FaeI	CATG	2 cut(s)	146, 395
FaiI	YATR	9 cut(s)	144, 189, 387, 393, 430, 440, 453, 475, 530
FaqI	GGGAC	2 cut(s)	425, 473
FatI	CATG	2 cut(s)	142, 391
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	4 cut(s)	249, 334, 499, 513
HapII	CCGG	5 cut(s)	225, 245, 329, 381, 500
HgaI	GACGC	3 cut(s)	173, 253, 280
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	146, 395
HinfI	GANTC	4 cut(s)	84, 115, 139, 413
HpaII	CCGG	5 cut(s)	225, 245, 329, 381, 500
HphI	GGTGA	2 cut(s)	158, 331
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	119, 268, 507
HpyAV	CCTTC	2 cut(s)	318, 369
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	273, 462
HpyCH4V	TGCA	2 cut(s)	4, 50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	273, 462
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	146, 395
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	124
MaeII	ACGT	2 cut(s)	273, 462
MaeIII	GTNAC	2 cut(s)	337, 463
MalI	GATC	1 cut(s)	108
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	37, 354, 357
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	3 cut(s)	115, 352, 503
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	5 cut(s)	225, 245, 329, 381, 500
MspR9I	CCNGG	7 cut(s)	111, 226, 245, 246, 251, 330, 382
MvaI	CCWGG	2 cut(s)	111, 251
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	5 cut(s)	226, 245, 246, 330, 382
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	146, 395
NlaIV	GGNNCC	2 cut(s)	176, 333
NmuCI	GTSAC	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	84, 115, 139
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	224
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	109, 249
PspGI	CCWGG	2 cut(s)	109, 249
PspN4I	GGNNCC	2 cut(s)	176, 333
PspPI	GGNCC	2 cut(s)	247, 332
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	2 cut(s)	156, 479
RsaNI	GTAC	2 cut(s)	155, 478
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	247, 332
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	7 cut(s)	111, 226, 245, 246, 251, 330, 382
SetI	ASST	8 cut(s)	160, 183, 237, 261, 276, 344, 379, 465
SmaI	CCCGGG	1 cut(s)	246
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	3 cut(s)	127, 350, 447
StyD4I	CCNGG	7 cut(s)	109, 224, 243, 244, 249, 328, 380
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	2 cut(s)	276, 465
TasI	AATT	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	84, 115, 139
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspMI	CCCGGG	1 cut(s)	244
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	44
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	405
XmaI	CCCGGG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.