Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0001070

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG398600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2829 bp

ATGGTGAAGTCGTACTTGCGATACGAGCAGGGTGCCGCCTTCGGCGTGATAGTTTCTGGCAATTCAAACATCGCCTACGACAGTTCCGGGAAGCACGTTTTTGCCCCGGGCCTGGAAAAGGTGGGCGTGTGGAACGTGCGACAAGGCATTTGCATCAAAACCTTAACTCCTTGTGCTGATGGATATTCGCCGCCAGTCACCTCCATCGCGGTCTCGCCTTCTTCTTCTTCTTCTTCTTCTCTGATAGCCACTGGGTATGGAGATGGGAGCATTAGAATTTGGGACTCTCAGAATAAAATTTGTGAGACCACATTCTACGGTCATACGGGGGCCGTTAGTGTCTTACGGTACAACAAGATTGGAGATAGGCTGGTTTCTGGTGGCCAAGATAAGGACATTATATTGTGGGATGTGGAGAGGGGCGAGGGCATCTATCGCCTCCGCGGGCATGGGAATCAGGTCACTGATCTCGTCTTCTTGGACTGTTGTAAGAAACTCGTTAGTTCCTCAAAAGATAAATTTTTGAAGGTCTGGGATCTTGAAACCCCCCATTGCATGCAGACAATAAGTGACCACCATAGTGAAATTTGGTCCATAGATATCGATCCGGAACAAAGATATTTGGTCTCTGGCTCTGCTGACTTGGAACTTAGGGTTTACACAATTAAGCATGACCTTAAAGCTTGCCAATCCACTTCTACTGCGAATGCAAATGGAACAGAAATTGCAGACTCTGGAGATCCATCCCCTCATAATAAATGGCAAGTTTTGAAGCTGTTTGGTGAATATCAGCGAAAAAGCAAGAACAGAGTTGCAACTGTGAGATTCAACAAGTCTGGAAATTTGTTGGCATGTCAAGAGGCAGGAAAGGCGGTACATATATTCAACGTACTGGATGAGGCTGAATCTACCCGTAAAGCAAACCGCAGGATTCGCCGGATCAAAAAGAAAAAGTCTGCCCAAGGGGAAGCCGAGGTGATGAAGGATGATGGAGCTGGAGAAGAGGGAAAGAGGCACGAGGTCATGGTCTCTGATGTTTTTCAACTTTTCCAAACTATCCGACCTGGCAAAAAGATATGTTCCATCTCTTTTTGTCCAAACCCTCCCAAGACTTCCCTAGCCACAATAGCTTTGTCTCTGAGCGATAATCAATGCGTGTTTTATTCTCTTGAGAGCGAAGCAACAAAACAAACACGCGCTATAGACCTCCACGGCCACCGATCATCTGTCACAAGTGTAGCGCTTAGCTCAGACAACACAGTTTTGATGTCAACCAGTCATAATGCAGCAAAGATCTGGAATCCAACCAATGGTTACTGCCTTGGAACTATTGACACAGGATTCGCCATGTGTGCTTTTATCCTTCCTTCTTGCAATAACAAGTTTGCACTTGTTGGAACCAAGGGTGGAACAATGGAAATTATTGACGTTGGGACTGCAACTGTCACTGAAGTAGTAGAAGCACATGGTGGCTCTGTTCAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGGAGTCAAAGAAGATTCTAAGCGCCTGCTAGTGTCAAATGTAAGAATGAAGGAGATGGATACTGATGTTCGTGTGGTTTCTATCAGTCCTGATGCCAAATATCTTTTGGTGGCGTTGGATACCATAGTAAAGGTATTCTATATGGATTCACTCAAACTTTTCGTCACCTTATATGGTCACAAGCTGCCAGTGCTATGTCTCGATGTCTCATCCGATGGAGAGTTAATAGTGACTGGATCTCAAGACAAAAATGTGAAGATTTGGGGGCTAGATTTTGGTGACTGCCACAAATCAATGTTTGATCATCAGAGCAGCGTTCAGCAAGTACAATTTGTGCCAAATACCCATTACTTTGTTAGTGTTGGGGATGATAAGCAAGTAAACTACTGGGATGCTGATAAATTTGAGTTGCTTTTAACTATGAAGGGACACCATGAGGGTGTTTGTTGCCTCGCTATTAGTAACCGTGGTGATTTCTTTGTCACGGGCTCTCATGATCGCTCAATTCGCCGCTGGGATCGTACTGATGAGCCATTTTTCCTTGAGGAAGAGAGGGAAAAACGGGAGTTGGAAAAGATGTACGAGTCTGACTTCAAGGATGAATATGAGAACAATTTTGCACTCAAGGAAAAGATCCCTGCAGAGGGAGCTGTGGCTTTTGCTGGGAAGAAAACTAAAGAAACAATTTCTTTGACCGACTCAATTGTTGCTAAACTAGAAATAGCATGGGAAGAATCAAAGCGACGAGCCAATTATGAGGCGGAAAAATTCAGTGGAAAGCTGGTTGCTGAGTTTCAACCAAATCCTTTTATGCTAGGGCTGTCTCCTCCTGATTATTTTCTGCATGAACTTTTGAAGGTTAAGACAAGCGATTTGGAGTCGATGCTATTGGGGATAACCTTCTCGGATGCCTTGAAGATTTTGTCTTTCTGCAAGGATGTTGGTCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACATTGCTGCTGCAGATAAATTGTAATCAATTGATTTCCACTCCAGCTGTAAAACCAATATTGACTGGTTTAAAAGAGGTTCTTTATCCCAACTTAAAGGCAAAGAAGGATATCATTGGTTACAACCATGCAGCAATGACTCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCTGATGCCATCTCCAAGCGTGGTGTAGGTGCAAGTTGGTATGGAAAGACGGAAGAAGGTAAATGCAAAAAAGTTCGAACATGTGAACCCGCGCCATATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

942

Amino Acids

104.63

Weight (kDa)

6.81

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	24 - 223	2.5e-26	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	29 - 232	5.9e-21	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	31 - 222	9.5e-67	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	36 - 139	8.8e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	39 - 105	7.6e-07	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	41 - 214	3.6e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	41 - 178	1e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	64 - 179	1.6e-13	WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	65 - 232	3.1e-14	CAF1B/HIR1 beta-propeller domain
Beta-prop_VPS8	PF23410	72 - 180	7.4e-06	Vps8 beta-propeller
WDR55	PF24796	76 - 233	1.8e-14	WDR55
WD40_MABP1-WDR62_2nd	PF24782	78 - 180	1.5e-08	MABP1/WDR62 second WD40 domain
Beta-prop_EML_2	PF23414	78 - 225	1.2e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR75_1st	PF23869	79 - 139	4.7e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_IFT140_1st	PF23383	80 - 139	4.9e-06	IFT140 first beta-propeller
Beta-prop_SCAP	PF24017	82 - 182	1.7e-11	SCAP Beta-propeller
EIF3I	PF24805	106 - 190	4.6e-10	EIF3I
WD40_Gbeta	PF25391	107 - 226	2e-12	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	109 - 189	4.1e-08	WDHD1 first WD40 domain
Beta-prop_WDR41	PF25178	120 - 226	3.5e-09	WDR41
WD40_Prp19	PF24814	121 - 234	1.2e-19	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	123 - 225	7.3e-08	TEP-1 second beta-propeller
EIF3I	PF24805	147 - 238	2e-08	EIF3I
WD40_WDHD1_1st	PF24817	153 - 227	5.2e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	175 - 228	4.7e-07	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	266 - 454	8e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	358 - 557	5.4e-14	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	374 - 518	2.5e-11	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	381 - 635	8.3e-28	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	410 - 697	2.2e-111	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	452 - 640	1.1e-11	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	459 - 691	1.2e-22	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	459 - 650	6.1e-23	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	459 - 572	2.6e-07	WDHD1 first WD40 domain
WDR55	PF24796	467 - 692	1.5e-15	WDR55
Beta-prop_EML_2	PF23414	495 - 630	4e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	502 - 693	3e-15	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	534 - 692	1.2e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	535 - 692	5.1e-28	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	538 - 698	1.2e-17	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	539 - 694	1.8e-30	WDR5 beta-propeller domain
Beta-prop_IFT122_1st	PF23381	543 - 642	4.4e-07	IFT122 first beta-propeller
WD40_Gbeta	PF25391	554 - 692	1.9e-11	G protein beta WD-40 repeat protein
EIF3I	PF24805	556 - 638	9.5e-09	EIF3I
WD40	PF00400	573 - 607	9.9e-09	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	573 - 652	4.4e-06	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	583 - 691	2.3e-09	MABP1/WDR62 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	593 - 692	1.7e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	620 - 692	1.7e-11	THOC3 beta-propeller domain
EIF3I	PF24805	620 - 693	2e-06	EIF3I
WD40_Prp19	PF24814	635 - 697	7e-08	Prp19 WD40 domain
WD40	PF00400	655 - 692	1.3e-08	WD domain, G-beta repeat
Utp12	PF04003	798 - 898	9.9e-14	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

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Orthologous Genes (Group: OG0001070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21540
fragaria_vesca	FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900 FvH4_6g16900
malus_domestica	MD12G1106200.v1.1
prunus_persica	Prupe.7G125100_v2.0.a1
pyrus_communis	pycom12g10640
rosa_chinensis	RchiOBHm_Chr3g0470921 RchiOBHm_Chr7g0191891 RchiOBHm_Chr7g0191911 RchiOBHm_Chr7g0224541
rosa_laevigata	RLG00000001887 RLG00000004419 RLG00000004420 RLG00000017852 RLG00000024233
rosa_multiflora	Rmu_co8045794.1_g000001 Rmu_co8107512.1_g000001 Rmu_co8259631.1_g000001 Rmu_co8279299.1_g000001 Rmu_co8395733.1_g000001 Rmu_sc0003361.1_g000007 Rmu_sc0003527.1_g000004 Rmu_sc0005264.1_g000005 Rmu_sc0023809.1_g000001 Rmu_sc0037201.1_g000001 Rmu_sc0037202.1_g000001 Rmu_sc0038402.1_g000001 Rmu_sc0038402.1_g000003 Rmu_sc0039860.1_g000001 Rmu_ssc0000421.1_g000010
rosa_roxburghii	Rroxscaffold_3G00234650 Rroxscaffold_3G00263480 Rroxscaffold_3G00263490 Rroxscaffold_6G00410410
rosa_rugosa	Rorug03G0113900 Rorug06G0511700 Rorug06G0511700 Rorug07G0172700 Rorug07G0172800 Rorug07G0182600
rosa_samantha	Rh2CG630200 Rh2DG680600 Rh3AG163600 Rh3BG189100 Rh3CG179100 Rh3DG187100 Rh5AG328900 Rh7AG121800 Rh7AG378900 Rh7BG123300 Rh7BG123400 Rh7CG398600 Rh7DG124900 Rh7DG369600
rosa_wichuraiana	Rw3G015400 Rw7G010370 Rw7G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2827
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	1310
AccI	GTMKAC	1 cut(s)	2503
AccII	CGCG	4 cut(s)	209, 444, 1197, 2816
AccIII	TCCGGA	1 cut(s)	607
AclWI	GGATC	7 cut(s)	543, 599, 734, 947, 1801, 2082, 2185
AcoI	YGGCCR	2 cut(s)	382, 1213
AcsI	RAATTY	9 cut(s)	276, 297, 518, 585, 841, 1494, 1958, 2324, 2522
AcuI	CTGAAG	1 cut(s)	1470
AdeI	CACNNNGTG	1 cut(s)	1469
AfaI	GTAC	7 cut(s)	14, 350, 876, 891, 1884, 2080, 2138
AfeI	AGCGCT	1 cut(s)	1242
AfiI	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1310, 2200, 2201
AflIII	ACRYGT	1 cut(s)	2804
AjnI	CCWGG	3 cut(s)	111, 1063, 2531
AleI	CACNNNNGTG	1 cut(s)	579
Alw26I	GTCTC	8 cut(s)	217, 299, 631, 1033, 1140, 1760, 1768, 2385
AlwI	GGATC	7 cut(s)	543, 599, 734, 947, 1801, 2082, 2185
AlwNI	CAGNNNCTG	1 cut(s)	734
Ama87I	CYCGRG	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	607
Aor51HI	AGCGCT	1 cut(s)	1242
AoxI	GGCC	4 cut(s)	109, 330, 382, 1213
ApeKI	GCWGC	6 cut(s)	1286, 1741, 1869, 2548, 2551, 2672
ApoI	RAATTY	9 cut(s)	276, 297, 518, 585, 841, 1494, 1958, 2324, 2522
ArsI	GACNNNNNNTTYG	8 cut(s)	132, 164, 1325, 1357, 1704, 1736, 2413, 2445
AspLEI	GCGC	4 cut(s)	1199, 1243, 1581, 2818
AspS9I	GGNCC	3 cut(s)	109, 330, 591
AsuC2I	CCSGG	3 cut(s)	88, 107, 108
AsuHPI	GGTGA	7 cut(s)	16, 190, 794, 988, 1714, 1847, 2039
AsuII	TTCGAA	1 cut(s)	2800
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	591
BaeI	ACNNNNGTAYC	4 cut(s)	1608, 1641, 1668, 1701
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	2048
BauI	CACGAG	1 cut(s)	1016
BbsI	GAAGAC	1 cut(s)	466
BbvI	GCAGC	6 cut(s)	1298, 1728, 1881, 2535, 2538, 2684
BceAI	ACGGC	2 cut(s)	317, 1228
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	3 cut(s)	113, 1065, 2533
BciVI	GTATCC	2 cut(s)	1609, 1669
BclI	TGATCA	1 cut(s)	1858
BcnI	CCSGG	3 cut(s)	88, 107, 108
BcoDI	GTCTC	8 cut(s)	217, 299, 631, 1033, 1140, 1760, 1768, 2385
BfaI	CTAG	5 cut(s)	1118, 1586, 1826, 2273, 2372
BfmI	CTRYAG	3 cut(s)	1200, 2196, 2552
BfoI	RGCGCY	2 cut(s)	1244, 1582
BfuI	GTATCC	2 cut(s)	1609, 1669
BglII	AGATCT	1 cut(s)	1293
BisI	GCNGC	9 cut(s)	36, 191, 1287, 1742, 1870, 2068, 2549, 2552, 2673
BlpI	GCTNAGC	1 cut(s)	1244
BlsI	GCNGC	9 cut(s)	37, 192, 1288, 1743, 1871, 2069, 2550, 2553, 2674
Bme1390I	CCNGG	6 cut(s)	88, 107, 108, 113, 1065, 2533
Bme18I	GGWCC	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	109, 330, 591
BmiI	GGNNCC	3 cut(s)	34, 331, 1399
BmrFI	CCNGG	6 cut(s)	88, 107, 108, 113, 1065, 2533
BmrI	ACTGGG	2 cut(s)	261, 1954
BmsI	GCATC	7 cut(s)	162, 438, 1639, 1939, 2430, 2455, 2719
BmuI	ACTGGG	2 cut(s)	261, 1954
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	3 cut(s)	756, 1017, 2568
Bpu1102I	GCTNAGC	1 cut(s)	1244
Bpu14I	TTCGAA	1 cut(s)	2800
BpuEI	CTTGAG	4 cut(s)	1190, 1782, 2120, 2165
BpuMI	CCSGG	3 cut(s)	88, 107, 108
Bsa29I	ATCGAT	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	603
BsaI	GGTCTC	4 cut(s)	217, 299, 631, 1033
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1310, 2200, 2201
Bse1I	ACTGG	8 cut(s)	194, 256, 897, 1275, 1745, 1795, 1949, 2611
Bse3DI	GCAATG	3 cut(s)	550, 2543, 2682
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	607
BseBI	CCWGG	3 cut(s)	113, 1065, 2533
BseCI	ATCGAT	1 cut(s)	603
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1310, 2200, 2201
BseMI	GCAATG	3 cut(s)	550, 2543, 2682
BseMII	CTCAG	5 cut(s)	302, 1130, 1263, 1542, 2337
BseNI	ACTGG	8 cut(s)	194, 256, 897, 1275, 1745, 1795, 1949, 2611
BseRI	GAGGAG	1 cut(s)	2373
BseXI	GCAGC	6 cut(s)	1298, 1728, 1881, 2535, 2538, 2684
BseYI	CCCAGC	2 cut(s)	2070, 2219
Bsh1236I	CGCG	4 cut(s)	209, 444, 1197, 2816
BshFI	GGCC	4 cut(s)	111, 332, 384, 1215
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	4 cut(s)	87, 107, 608, 937
BslFI	GGGAC	3 cut(s)	296, 1447, 1998
BslI	CCNNNNNNNGG	6 cut(s)	112, 118, 391, 1310, 2200, 2201
BsmAI	GTCTC	8 cut(s)	217, 299, 631, 1033, 1140, 1760, 1768, 2385
BsmFI	GGGAC	3 cut(s)	296, 1447, 1998
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	4 cut(s)	111, 332, 384, 1215
Bso31I	GGTCTC	4 cut(s)	217, 299, 631, 1033
BsoBI	CYCGRG	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	2800
Bsp1286I	GDGCHC	1 cut(s)	2048
Bsp13I	TCCGGA	1 cut(s)	607
Bsp1720I	GCTNAGC	1 cut(s)	1244
BspANI	GGCC	4 cut(s)	111, 332, 384, 1215
BspCNI	CTCAG	5 cut(s)	301, 1131, 1262, 1541, 2338
BspDI	ATCGAT	1 cut(s)	603
BspEI	TCCGGA	1 cut(s)	607
BspFNI	CGCG	4 cut(s)	209, 444, 1197, 2816
BspHI	TCATGA	1 cut(s)	2050
BspLI	GGNNCC	3 cut(s)	34, 331, 1399
BspMAI	CTGCAG	2 cut(s)	2200, 2556
BspPI	GGATC	7 cut(s)	543, 599, 734, 947, 1801, 2082, 2185
BspT104I	TTCGAA	1 cut(s)	2800
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	4 cut(s)	217, 299, 631, 1033
BsrDI	GCAATG	3 cut(s)	550, 2543, 2682
BsrI	ACTGG	8 cut(s)	194, 256, 897, 1275, 1745, 1795, 1949, 2611
BssSI	CACGAG	1 cut(s)	1016
BssT1I	CCWWGG	3 cut(s)	961, 1321, 1401
Bst2BI	CACGAG	1 cut(s)	1016
Bst2UI	CCWGG	3 cut(s)	113, 1065, 2533
Bst4CI	ACNGT	8 cut(s)	83, 320, 348, 485, 820, 1261, 1444, 2024
Bst6I	CTCTTC	2 cut(s)	996, 2100
BstBI	TTCGAA	1 cut(s)	2800
BstC8I	GCNNGC	4 cut(s)	446, 557, 685, 1583
BstDEI	CTNAG	8 cut(s)	288, 650, 1139, 1244, 1249, 1528, 1575, 2346
BstDSI	CCRYGG	3 cut(s)	442, 1210, 2023
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstFNI	CGCG	4 cut(s)	209, 444, 1197, 2816
BstH2I	RGCGCY	2 cut(s)	1244, 1582
BstHHI	GCGC	4 cut(s)	1199, 1243, 1581, 2818
BstMAI	GTCTC	8 cut(s)	217, 299, 631, 1033, 1140, 1760, 1768, 2385
BstMWI	GCNNNNNNNGC	9 cut(s)	25, 435, 869, 933, 1127, 1352, 1747, 2064, 2204
BstNI	CCWGG	3 cut(s)	113, 1065, 2533
BstNSI	RCATGY	3 cut(s)	559, 855, 2808
BstSCI	CCNGG	6 cut(s)	86, 105, 106, 111, 1063, 2531
BstSFI	CTRYAG	3 cut(s)	1200, 2196, 2552
BstUI	CGCG	4 cut(s)	209, 444, 1197, 2816
BstV1I	GCAGC	6 cut(s)	1298, 1728, 1881, 2535, 2538, 2684
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	5 cut(s)	535, 739, 1293, 1793, 2190
BstYI	RGATCY	5 cut(s)	535, 739, 1293, 1793, 2190
Bsu15I	ATCGAT	1 cut(s)	603
BsuI	GTATCC	2 cut(s)	1609, 1669
BsuRI	GGCC	4 cut(s)	111, 332, 384, 1215
BsuTUI	ATCGAT	1 cut(s)	603
BtgI	CCRYGG	3 cut(s)	442, 1210, 2023
BtgZI	GCGATG	2 cut(s)	55, 190
BtsIMutI	CAGTG	5 cut(s)	249, 462, 1446, 1752, 2335
Cac8I	GCNNGC	4 cut(s)	446, 557, 685, 1583
CaiI	CAGNNNCTG	1 cut(s)	734
CciI	TCATGA	1 cut(s)	2050
CfoI	GCGC	4 cut(s)	1199, 1243, 1581, 2818
Cfr13I	GGNCC	3 cut(s)	109, 330, 591
Cfr42I	CCGCGG	1 cut(s)	445
Cfr9I	CCCGGG	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	603
Csp6I	GTAC	7 cut(s)	13, 349, 875, 890, 1883, 2079, 2137
CviQI	GTAC	7 cut(s)	13, 349, 875, 890, 1883, 2079, 2137
DdeI	CTNAG	8 cut(s)	288, 650, 1139, 1244, 1249, 1528, 1575, 2346
DraI	TTTAAA	1 cut(s)	2613
DraIII	CACNNNGTG	1 cut(s)	1469
EaeI	YGGCCR	2 cut(s)	382, 1213
Eam1104I	CTCTTC	2 cut(s)	996, 2100
EarI	CTCTTC	2 cut(s)	996, 2100
EciI	GGCGGA	1 cut(s)	2333
Eco130I	CCWWGG	3 cut(s)	961, 1321, 1401
Eco24I	GRGCYC	1 cut(s)	2048
Eco31I	GGTCTC	4 cut(s)	217, 299, 631, 1033
Eco32I	GATATC	2 cut(s)	601, 2653
Eco47I	GGWCC	1 cut(s)	591
Eco47III	AGCGCT	1 cut(s)	1242
Eco57I	CTGAAG	1 cut(s)	1470
Eco88I	CYCGRG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	1494, 2522
EcoRII	CCWGG	3 cut(s)	111, 1063, 2531
EcoRV	GATATC	2 cut(s)	601, 2653
EcoT14I	CCWWGG	3 cut(s)	961, 1321, 1401
EcoT38I	GRGCYC	1 cut(s)	2048
ErhI	CCWWGG	3 cut(s)	961, 1321, 1401
FalI	AAGNNNNNCTT	3 cut(s)	31, 2607, 2639
FaqI	GGGAC	3 cut(s)	296, 1447, 1998
FauI	CCCGC	2 cut(s)	437, 2821
FbaI	TGATCA	1 cut(s)	1858
FblI	GTMKAC	1 cut(s)	2503
Fnu4HI	GCNGC	9 cut(s)	36, 191, 1287, 1742, 1870, 2068, 2549, 2552, 2673
FriOI	GRGCYC	1 cut(s)	2048
Fsp4HI	GCNGC	9 cut(s)	36, 191, 1287, 1742, 1870, 2068, 2549, 2552, 2673
FspBI	CTAG	5 cut(s)	1118, 1586, 1826, 2273, 2372
GlaI	GCGC	4 cut(s)	1198, 1242, 1580, 2817
GluI	GCNGC	9 cut(s)	36, 191, 1287, 1742, 1870, 2068, 2549, 2552, 2673
GsaI	CCCAGC	2 cut(s)	2074, 2223
GsuI	CTGGAG	3 cut(s)	756, 1017, 2568
HaeII	RGCGCY	2 cut(s)	1244, 1582
HaeIII	GGCC	4 cut(s)	111, 332, 384, 1215
HapII	CCGG	4 cut(s)	87, 107, 608, 937
HhaI	GCGC	4 cut(s)	1199, 1243, 1581, 2818
Hin6I	GCGC	4 cut(s)	1197, 1241, 1579, 2816
HinP1I	GCGC	4 cut(s)	1197, 1241, 1579, 2816
HincII	GTYRAC	1 cut(s)	1272
HindII	GTYRAC	1 cut(s)	1272
HindIII	AAGCTT	1 cut(s)	681
HpaII	CCGG	4 cut(s)	87, 107, 608, 937
HphI	GGTGA	7 cut(s)	16, 190, 794, 988, 1714, 1847, 2039
Hpy166II	GTNNAC	5 cut(s)	658, 1272, 1939, 2504, 2810
Hpy8I	GTNNAC	5 cut(s)	658, 1272, 1939, 2504, 2810
Hpy99I	CGWCG	1 cut(s)	2304
HpyCH4III	ACNGT	8 cut(s)	83, 320, 348, 485, 820, 1261, 1444, 2024
HpyCH4IV	ACGT	5 cut(s)	96, 135, 888, 1428, 2506
HpyF10VI	GCNNNNNNNGC	9 cut(s)	25, 435, 869, 933, 1127, 1352, 1747, 2064, 2204
HpyF3I	CTNAG	8 cut(s)	288, 650, 1139, 1244, 1249, 1528, 1575, 2346
HpySE526I	ACGT	5 cut(s)	96, 135, 888, 1428, 2506
HspAI	GCGC	4 cut(s)	1197, 1241, 1579, 2816
Kpn2I	TCCGGA	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	1858
KspI	CCGCGG	1 cut(s)	445
LmnI	GCTCC	3 cut(s)	267, 992, 2204
Lsp1109I	GCAGC	6 cut(s)	1298, 1728, 1881, 2535, 2538, 2684
LweI	GCATC	7 cut(s)	162, 438, 1639, 1939, 2430, 2455, 2719
MaeI	CTAG	5 cut(s)	1118, 1586, 1826, 2273, 2372
MaeII	ACGT	5 cut(s)	96, 135, 888, 1428, 2506
MfeI	CAATTG	3 cut(s)	2259, 2570, 2693
MflI	RGATCY	5 cut(s)	535, 739, 1293, 1793, 2190
MhlI	GDGCHC	1 cut(s)	2048
MlsI	TGGCCA	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	7 cut(s)	278, 725, 1569, 2150, 2249, 2444, 2674
MmeI	TCCRAC	5 cut(s)	1084, 1328, 1375, 1653, 2106
Mox20I	TGGCCA	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	607
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	9 cut(s)	164, 666, 678, 1542, 1781, 1973, 2418, 2612, 2636
MslI	CAYNNNNRTG	2 cut(s)	579, 1995
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	3 cut(s)	444, 2070, 2588
MspI	CCGG	4 cut(s)	87, 107, 608, 937
MspR9I	CCNGG	6 cut(s)	88, 107, 108, 113, 1065, 2533
MunI	CAATTG	3 cut(s)	2259, 2570, 2693
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	3 cut(s)	113, 1065, 2533
MvnI	CGCG	4 cut(s)	209, 444, 1197, 2816
MwoI	GCNNNNNNNGC	9 cut(s)	25, 435, 869, 933, 1127, 1352, 1747, 2064, 2204
NciI	CCSGG	3 cut(s)	88, 107, 108
NlaIV	GGNNCC	3 cut(s)	34, 331, 1399
NmeAIII	GCCGAG	1 cut(s)	997
NspI	RCATGY	3 cut(s)	559, 855, 2808
NspV	TTCGAA	1 cut(s)	2800
OliI	CACNNNNGTG	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	2050
PciI	ACATGT	1 cut(s)	2804
PctI	GAATGC	1 cut(s)	712
PflMI	CCANNNNNTGG	1 cut(s)	1310
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	9 cut(s)	37, 192, 1288, 1743, 1871, 2069, 2550, 2553, 2674
PleI	GAGTC	7 cut(s)	278, 725, 1568, 2149, 2249, 2443, 2674
PpsI	GAGTC	7 cut(s)	278, 725, 1568, 2149, 2249, 2443, 2674
PscI	ACATGT	1 cut(s)	2804
PsiI	TTATAA	1 cut(s)	2827
Psp6I	CCWGG	3 cut(s)	111, 1063, 2531
PspFI	CCCAGC	2 cut(s)	2070, 2219
PspGI	CCWGG	3 cut(s)	111, 1063, 2531
PspN4I	GGNNCC	3 cut(s)	34, 331, 1399
PspPI	GGNCC	3 cut(s)	109, 330, 591
PstI	CTGCAG	2 cut(s)	2200, 2556
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	5 cut(s)	535, 739, 1293, 1793, 2190
PvuII	CAGCTG	1 cut(s)	2588
RsaI	GTAC	7 cut(s)	14, 350, 876, 891, 1884, 2080, 2138
RsaNI	GTAC	7 cut(s)	13, 349, 875, 890, 1883, 2079, 2137
RseI	CAYNNNNRTG	2 cut(s)	579, 1995
SacII	CCGCGG	1 cut(s)	445
SaqAI	TTAA	9 cut(s)	164, 666, 678, 1542, 1781, 1973, 2418, 2612, 2636
SatI	GCNGC	9 cut(s)	36, 191, 1287, 1742, 1870, 2068, 2549, 2552, 2673
Sau96I	GGNCC	3 cut(s)	109, 330, 591
SchI	GAGTC	7 cut(s)	278, 725, 1569, 2150, 2249, 2444, 2674
ScrFI	CCNGG	6 cut(s)	88, 107, 108, 113, 1065, 2533
SduI	GDGCHC	1 cut(s)	2048
SfaNI	GCATC	7 cut(s)	162, 438, 1639, 1939, 2430, 2455, 2719
SfcI	CTRYAG	3 cut(s)	1200, 2196, 2552
Sfr303I	CCGCGG	1 cut(s)	445
SfuI	TTCGAA	1 cut(s)	2800
SgrBI	CCGCGG	1 cut(s)	445
SinI	GGWCC	1 cut(s)	591
SmaI	CCCGGG	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	579, 1995
SmlI	CTYRAG	4 cut(s)	1169, 1797, 2099, 2180
SmoI	CTYRAG	4 cut(s)	1169, 1797, 2099, 2180
SphI	GCATGC	1 cut(s)	559
SspI	AATATT	1 cut(s)	2601
SspMI	CTAG	5 cut(s)	1118, 1586, 1826, 2273, 2372
StyD4I	CCNGG	6 cut(s)	86, 105, 106, 111, 1063, 2531
StyI	CCWWGG	3 cut(s)	961, 1321, 1401
TaaI	ACNGT	8 cut(s)	83, 320, 348, 485, 820, 1261, 1444, 2024
TaiI	ACGT	5 cut(s)	99, 138, 891, 1431, 2509
TaqI	TCGA	4 cut(s)	603, 1758, 2438, 2800
TaqII	GACCGA	1 cut(s)	2267
TatI	WGTACW	1 cut(s)	1882
TauI	GCSGC	3 cut(s)	38, 193, 2070
Tru1I	TTAA	9 cut(s)	164, 666, 678, 1542, 1781, 1973, 2418, 2612, 2636
Tru9I	TTAA	9 cut(s)	164, 666, 678, 1542, 1781, 1973, 2418, 2612, 2636
TscAI	CASTG	5 cut(s)	256, 469, 1453, 1752, 2335
TseI	GCWGC	6 cut(s)	1286, 1741, 1869, 2548, 2551, 2672
TspDTI	ATGAA	7 cut(s)	995, 1518, 1619, 1994, 2172, 2418, 2515
TspGWI	ACGGA	1 cut(s)	2789
TspMI	CCCGGG	1 cut(s)	106
TspRI	CASTG	5 cut(s)	256, 469, 1453, 1752, 2335
Van91I	CCANNNNNTGG	1 cut(s)	1310
VpaK11BI	GGWCC	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	9 cut(s)	276, 297, 518, 585, 841, 1494, 1958, 2324, 2522
XceI	RCATGY	3 cut(s)	559, 855, 2808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1660
XmaI	CCCGGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	2503
XspI	CTAG	5 cut(s)	1118, 1586, 1826, 2273, 2372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.