WD40 repeats
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 222 |
| AciI | CCGC | 1 cut(s) | 156 |
| AclWI | GGATC | 1 cut(s) | 44 |
| AcsI | RAATTY | 2 cut(s) | 30, 227 |
| AfaI | GTAC | 1 cut(s) | 277 |
| AgsI | TTSAA | 2 cut(s) | 125, 181 |
| AluBI | AGCT | 2 cut(s) | 128, 184 |
| AluI | AGCT | 2 cut(s) | 128, 184 |
| AlwI | GGATC | 1 cut(s) | 44 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 146 |
| Aor13HI | TCCGGA | 1 cut(s) | 222 |
| ApoI | RAATTY | 2 cut(s) | 30, 227 |
| AspS9I | GGNCC | 1 cut(s) | 36 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| AvaII | GGWCC | 1 cut(s) | 36 |
| BccI | CCATC | 1 cut(s) | 27 |
| Bme18I | GGWCC | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 1 cut(s) | 36 |
| BsaBI | GATNNNNATC | 1 cut(s) | 48 |
| BsaWI | WCCGGW | 1 cut(s) | 222 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| Bse8I | GATNNNNATC | 1 cut(s) | 48 |
| BseAI | TCCGGA | 1 cut(s) | 222 |
| BseJI | GATNNNNATC | 1 cut(s) | 48 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BsiSI | CCGG | 1 cut(s) | 223 |
| Bsp13I | TCCGGA | 1 cut(s) | 222 |
| Bsp143I | GATC | 1 cut(s) | 49 |
| BspACI | CCGC | 1 cut(s) | 156 |
| BspEI | TCCGGA | 1 cut(s) | 222 |
| BspPI | GGATC | 1 cut(s) | 44 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssMI | GATC | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 2 cut(s) | 130, 235 |
| BstDEI | CTNAG | 1 cut(s) | 95 |
| BstKTI | GATC | 1 cut(s) | 52 |
| BstMBI | GATC | 1 cut(s) | 49 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 255 |
| Cac8I | GCNNGC | 2 cut(s) | 130, 235 |
| CaiI | CAGNNNCTG | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 1 cut(s) | 36 |
| Csp6I | GTAC | 1 cut(s) | 276 |
| CviAII | CATG | 2 cut(s) | 116, 134 |
| CviJI | RGCY | 3 cut(s) | 78, 128, 184 |
| CviKI_1 | RGCY | 3 cut(s) | 78, 128, 184 |
| CviQI | GTAC | 1 cut(s) | 276 |
| DdeI | CTNAG | 1 cut(s) | 95 |
| DpnI | GATC | 1 cut(s) | 51 |
| DpnII | GATC | 1 cut(s) | 49 |
| Eco47I | GGWCC | 1 cut(s) | 36 |
| FaeI | CATG | 2 cut(s) | 119, 137 |
| FaiI | YATR | 7 cut(s) | 24, 41, 117, 135, 239, 265, 267 |
| FatI | CATG | 2 cut(s) | 115, 133 |
| HapII | CCGG | 1 cut(s) | 223 |
| Hin1II | CATG | 2 cut(s) | 119, 137 |
| HindIII | AAGCTT | 1 cut(s) | 126 |
| HpaII | CCGG | 1 cut(s) | 223 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy188III | TCNNGA | 3 cut(s) | 53, 223, 243 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 149, 211 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 255 |
| HpyF3I | CTNAG | 1 cut(s) | 95 |
| Hsp92II | CATG | 2 cut(s) | 119, 137 |
| Kpn2I | TCCGGA | 1 cut(s) | 222 |
| Kzo9I | GATC | 1 cut(s) | 49 |
| LpnPI | CCDG | 6 cut(s) | 60, 66, 219, 235, 236, 264 |
| MaeIII | GTNAC | 1 cut(s) | 14 |
| MalI | GATC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 49 |
| MluCI | AATT | 3 cut(s) | 30, 108, 227 |
| MnlI | CCTC | 1 cut(s) | 239 |
| MroI | TCCGGA | 1 cut(s) | 222 |
| MseI | TTAA | 1 cut(s) | 111 |
| MslI | CAYNNNNRTG | 1 cut(s) | 24 |
| MspI | CCGG | 1 cut(s) | 223 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 255 |
| NdeII | GATC | 1 cut(s) | 49 |
| NlaIII | CATG | 2 cut(s) | 119, 137 |
| NmuCI | GTSAC | 1 cut(s) | 14 |
| PspPI | GGNCC | 1 cut(s) | 36 |
| PstNI | CAGNNNCTG | 1 cut(s) | 146 |
| RsaI | GTAC | 1 cut(s) | 277 |
| RsaNI | GTAC | 1 cut(s) | 276 |
| RseI | CAYNNNNRTG | 1 cut(s) | 24 |
| SaqAI | TTAA | 1 cut(s) | 111 |
| Sau3AI | GATC | 1 cut(s) | 49 |
| Sau96I | GGNCC | 1 cut(s) | 36 |
| SetI | ASST | 4 cut(s) | 101, 123, 130, 186 |
| SinI | GGWCC | 1 cut(s) | 36 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 24 |
| Sse9I | AATT | 3 cut(s) | 30, 108, 227 |
| SsiI | CCGC | 1 cut(s) | 156 |
| TasI | AATT | 3 cut(s) | 30, 108, 227 |
| Tru1I | TTAA | 1 cut(s) | 111 |
| Tru9I | TTAA | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 14 |
| Tsp45I | GTSAC | 1 cut(s) | 14 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| VpaK11BI | GGWCC | 1 cut(s) | 36 |
| XapI | RAATTY | 2 cut(s) | 30, 227 |