Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007257

Physical Location & Seq

Genomic Coordinates Reverse (-)

14549940 .. 14552868

Gene Structure 2929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G169600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACAGCCAACCGGAGGAGTCCGTACGGACGAAGATGGAATCGCTACGGATGGCCTGCGAGAAGGAGATTCCGATTCTGCAGCAGAACATGGATACCTTCACGGCCTCGTTTCAGGGCGACCTGGCTTCGATCCGCGCCACAGTGCAAGAAACCCTCCGATACCAAGGTAAAGTAGGAGAGGCTAAAGCTAAGTTGAGGGAAGCTGAGGATGAATTGTTTAAAGCCCTAGCAGTGAAGACCCGTAAAGAGGCTAAGCGGATGGCATTGATGGACGCCATTGCTGCTAGGAAAGCTAGGATTGAAGAAATTAAAAGAACAGTGCAAGATCGAAGGGATACGAGGGATGAATATGCTGCAATTCTTTCTCAGCAATCTACCGAATCTGAAGAAGAGTTTAACCAAGACAGTAAGGATGAAATTCAAGAGGCCATCTCGTGGTATAATAGGATTCTTGGTTTTCATATTGAAGGCGGACATGGGGTAAAATTCACATTCAAGAACATTTGTTCAAAAAATCCAAATCAGGAGTTCTCTTTCACTGTCCGCCATGCAAATGATACTTACACATTGTTAGATTGTGATCCGCACTTGAATGAGATCAAAGAGTTGATTCGTGAATTGAACAGAACCAATGGATTATTTAAATTTGTCAGAGATATGAGACTGAAGTTTCAAGAAGCTGCAGCTCAAGGATTAACCACTGTTCTTCCTCAAGACTCTTCCTCGATTTCTGGGTCTGCTCCAGCTTTTTCAGTGTCAACTGAGAGAAGTGAATCTGTGGCCAAGATTGGTGAGCTCCAAATTCAATATGGAGAAGATAATAGTCAATTCAAGAAACCTAACCATGGAAAGGGGAGTAAATATGCACTACTATCTCCTAGGTCTGCATCGTCTGTGCGTCGGTCTCCACGTTTTAAGGTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spindle_Spc25

Protein Analysis

311

Amino Acids

35.23

Weight (kDa)

8.79

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48210
fragaria_vesca	FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_6g24101 FvH4_6g24101
malus_domestica	MD06G1170100.v1.1 MD14G1175700.v1.1
prunus_persica	Prupe.5G169600_v2.0.a1 Prupe.5G169600_v2.0.a1
pyrus_communis	pycom06g15150 pycom14g14680
rosa_chinensis	RchiOBHm_Chr7g0193001
rosa_laevigata	RLG00000004302
rosa_multiflora	Rmu_sc0002040.1_g000074
rosa_roxburghii	Rroxscaffold_3G00262460
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132200 Rh7BG133100 Rh7CG136200 Rh7DG134100
rosa_wichuraiana	Rw7G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccII	CGCG	1 cut(s)	138
AciI	CCGC	5 cut(s)	136, 259, 474, 547, 587
AclWI	GGATC	2 cut(s)	127, 578
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	4 cut(s)	420, 488, 647, 804
AcuI	CTGAAG	2 cut(s)	408, 689
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	5 cut(s)	16, 250, 438, 848, 853
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	7 cut(s)	191, 206, 296, 683, 689, 749, 799
AluI	AGCT	7 cut(s)	191, 206, 296, 683, 689, 749, 799
Alw21I	GWGCWC	1 cut(s)	801
Alw26I	GTCTC	2 cut(s)	658, 912
AlwI	GGATC	2 cut(s)	127, 578
AoxI	GGCC	4 cut(s)	54, 105, 429, 783
ApeKI	GCWGC	5 cut(s)	82, 284, 356, 683, 686
ApoI	RAATTY	4 cut(s)	420, 488, 647, 804
AspA2I	CCTAGG	1 cut(s)	881
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	806
AvrII	CCTAGG	1 cut(s)	881
BaeI	ACNNNNGTAYC	2 cut(s)	154, 187
BalI	TGGCCA	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	801
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	801
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	94, 271, 343, 670, 698
BccI	CCATC	5 cut(s)	31, 46, 256, 265, 440
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	2 cut(s)	88, 331
BcoDI	GTCTC	2 cut(s)	658, 912
BfaI	CTAG	4 cut(s)	230, 288, 297, 882
BfmI	CTRYAG	2 cut(s)	80, 684
BfuI	GTATCC	2 cut(s)	88, 331
BisI	GCNGC	5 cut(s)	83, 285, 357, 684, 687
BlnI	CCTAGG	1 cut(s)	881
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	5 cut(s)	84, 286, 358, 685, 688
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	899
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	729
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	675, 699
BsaBI	GATNNNNATC	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	3 cut(s)	166, 847, 881
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 250, 438, 848, 853
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	3 cut(s)	166, 847, 881
BseGI	GGATG	5 cut(s)	57, 217, 267, 352, 421
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	5 cut(s)	16, 250, 438, 848, 853
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	198, 383, 756
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	5 cut(s)	94, 271, 343, 670, 698
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	56, 107, 431, 785
BsiHKAI	GWGCWC	1 cut(s)	801
BsiSI	CCGG	1 cut(s)	14
BsiWI	CGTACG	1 cut(s)	25
BslI	CCNNNNNNNGG	5 cut(s)	16, 250, 438, 848, 853
BsmAI	GTCTC	2 cut(s)	658, 912
BsnI	GGCC	4 cut(s)	56, 107, 431, 785
Bso31I	GGTCTC	1 cut(s)	912
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp143I	GATC	4 cut(s)	132, 328, 583, 600
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	847
BspACI	CCGC	5 cut(s)	136, 259, 474, 547, 587
BspANI	GGCC	4 cut(s)	56, 107, 431, 785
BspCNI	CTCAG	3 cut(s)	199, 382, 757
BspFNI	CGCG	1 cut(s)	138
BspMAI	CTGCAG	2 cut(s)	84, 688
BspPI	GGATC	2 cut(s)	127, 578
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	166, 847, 881
BssMI	GATC	4 cut(s)	132, 328, 583, 600
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	436
BssT1I	CCWWGG	3 cut(s)	166, 847, 881
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	5 cut(s)	145, 322, 410, 544, 706
Bst6I	CTCTTC	2 cut(s)	387, 727
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	5 cut(s)	192, 207, 255, 369, 765
BstDSI	CCRYGG	1 cut(s)	847
BstF5I	GGATG	5 cut(s)	57, 217, 267, 352, 421
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	135, 331, 586, 603
BstMAI	GTCTC	2 cut(s)	658, 912
BstMBI	GATC	4 cut(s)	132, 328, 583, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 293
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	2 cut(s)	80, 684
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	5 cut(s)	94, 271, 343, 670, 698
BstV2I	GAAGAC	1 cut(s)	245
BsuI	GTATCC	2 cut(s)	88, 331
BsuRI	GGCC	4 cut(s)	56, 107, 431, 785
BtgI	CCRYGG	1 cut(s)	847
BtsCI	GGATG	5 cut(s)	57, 217, 267, 352, 421
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	6 cut(s)	150, 240, 327, 540, 702, 762
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	140
CseI	GACGC	2 cut(s)	284, 890
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	4 cut(s)	91, 479, 551, 848
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	5 cut(s)	192, 207, 255, 369, 765
DpnI	GATC	4 cut(s)	134, 330, 585, 602
DpnII	GATC	4 cut(s)	132, 328, 583, 600
DraI	TTTAAA	2 cut(s)	223, 646
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	387, 727
EarI	CTCTTC	2 cut(s)	387, 727
EciI	GGCGGA	2 cut(s)	489, 536
Ecl136II	GAGCTC	1 cut(s)	799
Eco130I	CCWWGG	3 cut(s)	166, 847, 881
Eco24I	GRGCYC	1 cut(s)	801
Eco31I	GGTCTC	1 cut(s)	912
Eco53kI	GAGCTC	1 cut(s)	799
Eco57I	CTGAAG	2 cut(s)	408, 689
EcoICRI	GAGCTC	1 cut(s)	799
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	3 cut(s)	166, 847, 881
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	3 cut(s)	166, 847, 881
FaeI	CATG	4 cut(s)	94, 482, 554, 851
FatI	CATG	4 cut(s)	90, 478, 550, 847
Fnu4HI	GCNGC	5 cut(s)	83, 285, 357, 684, 687
FokI	GGATG	5 cut(s)	64, 224, 274, 359, 428
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	5 cut(s)	83, 285, 357, 684, 687
FspBI	CTAG	4 cut(s)	230, 288, 297, 882
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	5 cut(s)	83, 285, 357, 684, 687
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	4 cut(s)	56, 107, 431, 785
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	2 cut(s)	284, 890
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	94, 482, 554, 851
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HinfI	GANTC	9 cut(s)	20, 41, 70, 76, 383, 451, 613, 719, 776
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	806
Hpy166II	GTNNAC	1 cut(s)	762
Hpy188I	TCNGA	4 cut(s)	75, 161, 388, 656
Hpy188III	TCNNGA	8 cut(s)	425, 499, 527, 617, 677, 716, 835, 925
Hpy8I	GTNNAC	1 cut(s)	762
Hpy99I	CGWCG	1 cut(s)	906
HpyAV	CCTTC	4 cut(s)	58, 109, 327, 464
HpyCH4III	ACNGT	5 cut(s)	145, 322, 410, 544, 706
HpyCH4IV	ACGT	1 cut(s)	913
HpyCH4V	TGCA	8 cut(s)	82, 148, 325, 359, 554, 686, 869, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 293
HpyF3I	CTNAG	5 cut(s)	192, 207, 255, 369, 765
HpySE526I	ACGT	1 cut(s)	913
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	94, 482, 554, 851
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	132, 328, 583, 600
LmnI	GCTCC	2 cut(s)	748, 804
LpnPI	CCDG	8 cut(s)	27, 70, 101, 110, 137, 512, 720, 759
Lsp1109I	GCAGC	5 cut(s)	94, 271, 343, 670, 698
LweI	GCATC	1 cut(s)	899
MaeI	CTAG	4 cut(s)	230, 288, 297, 882
MaeII	ACGT	1 cut(s)	913
MalI	GATC	4 cut(s)	134, 330, 585, 602
MboI	GATC	4 cut(s)	132, 328, 583, 600
MboII	GAAGA	8 cut(s)	46, 250, 317, 401, 404, 701, 714, 830
MhlI	GDGCHC	1 cut(s)	801
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	9 cut(s)	215, 309, 360, 420, 488, 620, 647, 804, 830
MluNI	TGGCCA	1 cut(s)	785
MlyI	GAGTC	2 cut(s)	29, 713
Mox20I	TGGCCA	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	6 cut(s)	222, 312, 399, 645, 698, 918
MslI	CAYNNNNRTG	2 cut(s)	555, 594
Msp20I	TGGCCA	1 cut(s)	785
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	284, 293
NcoI	CCATGG	1 cut(s)	847
NdeII	GATC	4 cut(s)	132, 328, 583, 600
NlaIII	CATG	4 cut(s)	94, 482, 554, 851
PcsI	WCGNNNNNNNCGW	1 cut(s)	910
PfeI	GAWTC	7 cut(s)	41, 70, 76, 383, 451, 613, 776
Pfl23II	CGTACG	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	5 cut(s)	84, 286, 358, 685, 688
PleI	GAGTC	2 cut(s)	28, 713
PpsI	GAGTC	2 cut(s)	28, 713
Psp124BI	GAGCTC	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspLI	CGTACG	1 cut(s)	25
PstI	CTGCAG	2 cut(s)	84, 688
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	2 cut(s)	555, 594
SacI	GAGCTC	1 cut(s)	801
SaqAI	TTAA	6 cut(s)	222, 312, 399, 645, 698, 918
SatI	GCNGC	5 cut(s)	83, 285, 357, 684, 687
Sau3AI	GATC	4 cut(s)	132, 328, 583, 600
SchI	GAGTC	2 cut(s)	29, 713
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	1 cut(s)	899
SfcI	CTRYAG	2 cut(s)	80, 684
SmiI	ATTTAAAT	1 cut(s)	646
SmiMI	CAYNNNNRTG	2 cut(s)	555, 594
SmlI	CTYRAG	2 cut(s)	690, 714
SmoI	CTYRAG	2 cut(s)	690, 714
Sse9I	AATT	9 cut(s)	215, 309, 360, 420, 488, 620, 647, 804, 830
SsiI	CCGC	5 cut(s)	136, 259, 474, 547, 587
SspMI	CTAG	4 cut(s)	230, 288, 297, 882
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	3 cut(s)	166, 847, 881
SwaI	ATTTAAAT	1 cut(s)	646
TaaI	ACNGT	5 cut(s)	145, 322, 410, 544, 706
TaiI	ACGT	1 cut(s)	916
TaqI	TCGA	3 cut(s)	131, 331, 728
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	9 cut(s)	215, 309, 360, 420, 488, 620, 647, 804, 830
TfiI	GAWTC	7 cut(s)	41, 70, 76, 383, 451, 613, 776
Tru1I	TTAA	6 cut(s)	222, 312, 399, 645, 698, 918
Tru9I	TTAA	6 cut(s)	222, 312, 399, 645, 698, 918
TscAI	CASTG	6 cut(s)	150, 240, 327, 547, 709, 762
TseI	GCWGC	5 cut(s)	82, 284, 356, 683, 686
TspDTI	ATGAA	4 cut(s)	228, 363, 432, 452
TspGWI	ACGGA	3 cut(s)	13, 43, 64
TspRI	CASTG	6 cut(s)	150, 240, 327, 547, 709, 762
Van91I	CCANNNNNTGG	1 cut(s)	438
XapI	RAATTY	4 cut(s)	420, 488, 647, 804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XmaJI	CCTAGG	1 cut(s)	881
XspI	CTAG	4 cut(s)	230, 288, 297, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.