Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007257

Physical Location & Seq

Genomic Coordinates Reverse (-)

19733724 .. 19735825

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15150.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACGGCAAACCAGAGGAGTCCGTACGGACGAAGATGGAGTCGCTACGGATGGCCTGCGAGAGTGAGATTCCTATCCACCAGCAGGATTTGGATGCCTTCACGGCGTCGTTTCTGGATTCCCTGGCTTCCGTCCGCGCTACCGCACAAGAAACCCTCCAGTCCCAAGGTAAATTAGGAGAGGCTAAAGCTAAATTGAGGGAAGCTGAGGATGATTTGTTTAAAGCCCTAGCAGTGAAGACCCGTAAAGAGGCCAAGCGAATGGCATTGATGGAGGCCATTGAAGCTAGGAAAGCTAGAATTGGAGTACTTAAGAGAACAGTGCAAGATCAAAGGGCTAAGAGGGATGAATATGCTGCAATCCTTTCTCAGCAATCTTTCGAATCTGAAGAAAATTGTATCCCAGACAGAAAGGATGAAATAAAAGAGGCCATCTCGTGGTATAATAGGGTTCTTGGTTTCTACATTGAAGGCGGATATGGTGTAAAATTCACATTCAAAAACATTAGTTTGAAGAATCCAGATCGGGAATTCTGTTTCACTGTTCGCCATGCAAATGATACTTACACCTTGTTAGATTGTGATCCGTACTTGAACGAGACCAAAGAGATGATTCGCGAATTGAACAGAACCAATGAGTTATTTAAATTTGCCAGAGATATGAGAGTGAAGTTTCAAGATGCTGCAGCTCAAGGATTACCAGCTGTTCTTCCTCAAGATTCATCCACAATTTCTGGGTCTGCTCCAGTTTTGTCCGTCTCAACTGAGAGAAGTGAATCTCCGGCCAAGATTTATGACCACCAAGTTCAATACGGAGGAGAAAATAGACATTTCAAGAAACCAAACCATGGGAAGGGGAGTAGAGCAGCAATTCTATCTCCTGCCTCTGCATTATCTATTCGTCGGTCTCCTCGTTTAAGGGTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spindle_Spc25

Protein Analysis

311

Amino Acids

35.07

Weight (kDa)

9.09

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48210
fragaria_vesca	FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_5g05820 FvH4_6g24101 FvH4_6g24101
malus_domestica	MD06G1170100.v1.1 MD14G1175700.v1.1
prunus_persica	Prupe.5G169600_v2.0.a1 Prupe.5G169600_v2.0.a1
pyrus_communis	pycom06g15150 pycom14g14680
rosa_chinensis	RchiOBHm_Chr7g0193001
rosa_laevigata	RLG00000004302
rosa_multiflora	Rmu_sc0002040.1_g000074
rosa_roxburghii	Rroxscaffold_3G00262460
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132200 Rh7BG133100 Rh7CG136200 Rh7DG134100
rosa_wichuraiana	Rw7G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	438, 848
AccII	CGCG	2 cut(s)	138, 618
AciI	CCGC	3 cut(s)	136, 144, 474
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	3 cut(s)	488, 530, 647
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	3 cut(s)	27, 309, 590
AfiI	CCNNNNNNNGG	5 cut(s)	85, 250, 438, 848, 853
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	9 cut(s)	284, 470, 499, 514, 595, 625, 677, 809, 835
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	6 cut(s)	191, 206, 287, 296, 689, 704
AluI	AGCT	6 cut(s)	191, 206, 287, 296, 689, 704
Alw26I	GTCTC	3 cut(s)	593, 763, 912
AlwI	GGATC	1 cut(s)	578
AoxI	GGCC	5 cut(s)	54, 252, 276, 429, 783
ApeKI	GCWGC	4 cut(s)	356, 683, 686, 866
ApoI	RAATTY	3 cut(s)	488, 530, 647
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspLEI	GCGC	1 cut(s)	140
AsuII	TTCGAA	1 cut(s)	381
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	343, 670, 698, 878
BccI	CCATC	4 cut(s)	31, 46, 265, 440
BceAI	ACGGC	2 cut(s)	22, 120
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	410
BcoDI	GTCTC	3 cut(s)	593, 763, 912
BfaI	CTAG	3 cut(s)	230, 288, 297
BfmI	CTRYAG	1 cut(s)	684
BfrI	CTTAAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	410
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	4 cut(s)	357, 684, 687, 867
BlsI	GCNGC	4 cut(s)	358, 685, 688, 868
BmcAI	AGTACT	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	85, 670
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	2 cut(s)	143, 729
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	675, 699
BsaBI	GATNNNNATC	2 cut(s)	74, 582
BsaHI	GRCGYC	1 cut(s)	107
BsaI	GGTCTC	2 cut(s)	593, 912
BsaJI	CCNNGG	3 cut(s)	123, 166, 847
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 250, 438, 848, 853
Bse1I	ACTGG	2 cut(s)	160, 746
Bse8I	GATNNNNATC	2 cut(s)	74, 582
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	3 cut(s)	123, 166, 847
BseGI	GGATG	6 cut(s)	57, 100, 217, 352, 421, 722
BseJI	GATNNNNATC	2 cut(s)	74, 582
BseLI	CCNNNNNNNGG	5 cut(s)	85, 250, 438, 848, 853
BseMII	CTCAG	3 cut(s)	198, 383, 756
BseNI	ACTGG	2 cut(s)	160, 746
BseRI	GAGGAG	3 cut(s)	32, 831, 900
BseXI	GCAGC	4 cut(s)	343, 670, 698, 878
Bsh1236I	CGCG	2 cut(s)	138, 618
BshFI	GGCC	5 cut(s)	56, 254, 278, 431, 785
BsiSI	CCGG	1 cut(s)	782
BsiWI	CGTACG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	5 cut(s)	85, 250, 438, 848, 853
BsmAI	GTCTC	3 cut(s)	593, 763, 912
BsmBI	CGTCTC	1 cut(s)	763
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	5 cut(s)	56, 254, 278, 431, 785
Bso31I	GGTCTC	2 cut(s)	593, 912
Bsp119I	TTCGAA	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	328, 523, 583
Bsp19I	CCATGG	1 cut(s)	847
Bsp68I	TCGCGA	1 cut(s)	618
BspACI	CCGC	3 cut(s)	136, 144, 474
BspANI	GGCC	5 cut(s)	56, 254, 278, 431, 785
BspCNI	CTCAG	3 cut(s)	199, 382, 757
BspFNI	CGCG	2 cut(s)	138, 618
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	1 cut(s)	578
BspT104I	TTCGAA	1 cut(s)	381
BspTI	CTTAAG	1 cut(s)	311
BspTNI	GGTCTC	2 cut(s)	593, 912
BsrI	ACTGG	2 cut(s)	160, 746
BssECI	CCNNGG	3 cut(s)	123, 166, 847
BssMI	GATC	3 cut(s)	328, 523, 583
BssNI	GRCGYC	1 cut(s)	107
BssSI	CACGAG	1 cut(s)	436
BssT1I	CCWWGG	2 cut(s)	166, 847
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	322, 544
BstACI	GRCGYC	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	207, 339, 369, 765
BstDSI	CCRYGG	1 cut(s)	847
BstF5I	GGATG	6 cut(s)	57, 100, 217, 352, 421, 722
BstFNI	CGCG	2 cut(s)	138, 618
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	331, 526, 586
BstMAI	GTCTC	3 cut(s)	593, 763, 912
BstMBI	GATC	3 cut(s)	328, 523, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 284, 293
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	2 cut(s)	138, 618
BstV1I	GCAGC	4 cut(s)	343, 670, 698, 878
BstV2I	GAAGAC	1 cut(s)	245
BstXI	CCANNNNNNTGG	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	5 cut(s)	56, 254, 278, 431, 785
BtgI	CCRYGG	1 cut(s)	847
BtsCI	GGATG	6 cut(s)	57, 100, 217, 352, 421, 722
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	240, 327, 540
BtuMI	TCGCGA	1 cut(s)	618
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	140
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	26, 308, 589
CviAII	CATG	2 cut(s)	551, 848
CviQI	GTAC	3 cut(s)	26, 308, 589
DdeI	CTNAG	4 cut(s)	207, 339, 369, 765
DpnI	GATC	3 cut(s)	330, 525, 585
DpnII	GATC	3 cut(s)	328, 523, 583
DraI	TTTAAA	2 cut(s)	223, 646
EaeI	YGGCCR	1 cut(s)	783
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	166, 847
Eco31I	GGTCTC	2 cut(s)	593, 912
Eco57I	CTGAAG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	166, 847
ErhI	CCWWGG	2 cut(s)	166, 847
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	2 cut(s)	554, 851
FaiI	YATR	7 cut(s)	354, 444, 480, 552, 662, 795, 849
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	550, 847
Fnu4HI	GCNGC	4 cut(s)	357, 684, 687, 867
FokI	GGATG	6 cut(s)	64, 107, 224, 359, 428, 709
Fsp4HI	GCNGC	4 cut(s)	357, 684, 687, 867
FspBI	CTAG	3 cut(s)	230, 288, 297
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	357, 684, 687, 867
GsuI	CTGGAG	2 cut(s)	143, 729
HaeIII	GGCC	5 cut(s)	56, 254, 278, 431, 785
HapII	CCGG	1 cut(s)	782
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	554, 851
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	9 cut(s)	20, 41, 70, 119, 383, 517, 613, 719, 776
HpaII	CCGG	1 cut(s)	782
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	8 cut(s)	116, 521, 527, 617, 677, 716, 835, 925
Hpy99I	CGWCG	2 cut(s)	112, 906
HpyAV	CCTTC	3 cut(s)	109, 464, 847
HpyCH4III	ACNGT	2 cut(s)	322, 544
HpyCH4V	TGCA	5 cut(s)	325, 359, 554, 686, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 284, 293
HpyF3I	CTNAG	4 cut(s)	207, 339, 369, 765
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	554, 851
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	328, 523, 583
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	4 cut(s)	343, 670, 698, 878
LweI	GCATC	2 cut(s)	85, 670
MaeI	CTAG	3 cut(s)	230, 288, 297
MalI	GATC	3 cut(s)	330, 525, 585
MboI	GATC	3 cut(s)	328, 523, 583
MboII	GAAGA	5 cut(s)	46, 250, 401, 526, 701
MlyI	GAGTC	2 cut(s)	29, 50
MseI	TTAA	4 cut(s)	222, 312, 645, 917
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	2 cut(s)	138, 618
MwoI	GCNNNNNNNGC	3 cut(s)	104, 284, 293
NcoI	CCATGG	1 cut(s)	847
NdeII	GATC	3 cut(s)	328, 523, 583
NlaIII	CATG	2 cut(s)	554, 851
NruI	TCGCGA	1 cut(s)	618
NspV	TTCGAA	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	910
PfeI	GAWTC	7 cut(s)	70, 119, 383, 517, 613, 719, 776
Pfl23II	CGTACG	1 cut(s)	25
PflMI	CCANNNNNTGG	2 cut(s)	438, 848
PkrI	GCNGC	4 cut(s)	358, 685, 688, 868
PleI	GAGTC	2 cut(s)	28, 49
PpsI	GAGTC	2 cut(s)	28, 49
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspLI	CGTACG	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	704
RruI	TCGCGA	1 cut(s)	618
RsaI	GTAC	3 cut(s)	27, 309, 590
RsaNI	GTAC	3 cut(s)	26, 308, 589
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	222, 312, 645, 917
SatI	GCNGC	4 cut(s)	357, 684, 687, 867
Sau3AI	GATC	3 cut(s)	328, 523, 583
ScaI	AGTACT	1 cut(s)	309
SchI	GAGTC	2 cut(s)	29, 50
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	8 cut(s)	172, 193, 208, 289, 298, 572, 691, 706
SfaNI	GCATC	2 cut(s)	85, 670
SfcI	CTRYAG	1 cut(s)	684
SfuI	TTCGAA	1 cut(s)	381
SmiI	ATTTAAAT	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	3 cut(s)	311, 690, 714
SmoI	CTYRAG	3 cut(s)	311, 690, 714
SsiI	CCGC	3 cut(s)	136, 144, 474
SspMI	CTAG	3 cut(s)	230, 288, 297
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	166, 847
SwaI	ATTTAAAT	1 cut(s)	646
TaaI	ACNGT	2 cut(s)	322, 544
TaqI	TCGA	1 cut(s)	381
TaqII	GACCGA	1 cut(s)	894
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	7 cut(s)	70, 119, 383, 517, 613, 719, 776
Tru1I	TTAA	4 cut(s)	222, 312, 645, 917
Tru9I	TTAA	4 cut(s)	222, 312, 645, 917
TscAI	CASTG	3 cut(s)	240, 327, 547
TseI	GCWGC	4 cut(s)	356, 683, 686, 866
TspDTI	ATGAA	3 cut(s)	363, 432, 711
TspGWI	ACGGA	7 cut(s)	13, 43, 64, 121, 576, 745, 828
TspRI	CASTG	3 cut(s)	240, 327, 547
Van91I	CCANNNNNTGG	2 cut(s)	438, 848
Vha464I	CTTAAG	1 cut(s)	311
XapI	RAATTY	3 cut(s)	488, 530, 647
XspI	CTAG	3 cut(s)	230, 288, 297
ZrmI	AGTACT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.