Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009773

Physical Location & Seq

Genomic Coordinates Forward (+)

15833394 .. 15836719

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G195000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCTACTCCTCAAACAAGGAACTTTGGGCTTCCATTCATGAACCTTATCAGATTAAAAGGAATTCCTATCCTGCAGCAGCTTCATTTAGAGGAGCAATTGCTTCGAACCTCGTCTGATAATTGGTGCATTATGAATGATGGAACAAATGATCCTACTATTGTAATGGGTATTTCAGGAAAACCTGCAGAGCTTCTTGAAATTGATTTGGTGTTACGAGATCAGATTCCTGTCATTAGAAGGTTCACCGGAGGTGGTACTGTTACTGTTGATCACAACACCGTATTTGTTACTTTCATATGCAACGCGGATGCGGTTGCTGGCCTGCAACCATATCCTCGACCTATAATGTCCTGGAGTAGCCTTTTATACAGCAGAGTGTTTGAAGGACGTGGTGATTTTCAACTTCGTGAAAATGATTATGTATTTGGTAACCGCAAGTTTGGTGGGAATGCTCAATCTATTACTAAAACCCGGTGGATCCACCACACTTCCTTTCTATGGGACTATGAGGTTAGGAACATGGCATACCTCAGACTTCCAAAACGAATTCCCGAGTATCGATTGGCAAGGGACCATTTGGAATTCATATGCTGCCTCAAGGACTACATCCCAAGATCGGTTTTTCTTGACAAAACTGTGGATGCACTTAGAACCCAATTTTCCGTGAGATCCGAGCAGTTGGATGCCTTTGAAGCTACCTCAAACACAAAGTTTGTACCCTCAACTAGGCTGTTGACAAGGCAGGAATTGGAGGAAGCGGCTTTTGGCTCTCATGCTGAGACCACTCTCTCTCAATCATTGTCATTGATGGGAAGGGTGAAGTTAAAGATAAAGAAATTGGAGAGCAGCGGTAACCGGCAGGTTACGTTTTCGAAAAGGAGAAATGGAATCTTGAAGAAAGCAAAGGAGTTATCAATACTATGTGATGTAGATATTGTCCTTCTCATGTTTTCCCCGACTGGAAGGCCTACATTACTCCAAGGGGAGCGCAGTACTGTCGAAGAGATTATTTCAAAGTTTGCCCAATTAACTCCACAGGAGAGGGCAAAGAGGAAATTGGAGAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGATGTAAATGTACAAGAATTCATGAGTTCAAGGTATGTGATTGTGTTCATCAGATTTGTCATTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

45.01

Weight (kDa)

9.48

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29010 AT3G29010 AT3G29010 AT3G29010 AT3G29010 AT3G29010
fragaria_vesca	FvH4_5g14790 FvH4_5g14790 FvH4_7g07490 FvH4_7g07490 FvH4_7g07490
malus_domestica	MD06G1194800.v1.1 MD14G1201800.v1.1
prunus_persica	Prupe.5G195000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181591
rosa_laevigata	RLG00000005181
rosa_roxburghii	Rroxscaffold_3G00271870
rosa_samantha	Rh7AG044700 Rh7BG043700 Rh7DG044300
rosa_wichuraiana	Rw7G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	193, 853
AccII	CGCG	1 cut(s)	308
AciI	CCGC	5 cut(s)	308, 314, 436, 761, 852
AclWI	GGATC	4 cut(s)	146, 475, 488, 666
AcsI	RAATTY	4 cut(s)	63, 549, 584, 1124
AcuI	CTGAAG	1 cut(s)	1100
AfaI	GTAC	4 cut(s)	259, 720, 997, 1119
AfiI	CCNNNNNNNGG	3 cut(s)	501, 619, 729
AgsI	TTSAA	8 cut(s)	200, 386, 404, 695, 898, 1017, 1073, 1137
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	353
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
AluBI	AGCT	3 cut(s)	82, 193, 698
AluI	AGCT	3 cut(s)	82, 193, 698
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	4 cut(s)	146, 475, 488, 666
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	322, 968
ApeKI	GCWGC	4 cut(s)	76, 79, 594, 849
ApoI	RAATTY	4 cut(s)	63, 549, 584, 1124
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	238, 407, 832
AsuII	TTCGAA	2 cut(s)	106, 875
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	88, 91, 581, 861
BccI	CCATC	2 cut(s)	134, 805
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 982, 1016
BciT130I	CCWGG	1 cut(s)	355
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	776
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	2 cut(s)	74, 186
BfuAI	ACCTGC	2 cut(s)	193, 853
BisI	GCNGC	5 cut(s)	77, 80, 595, 762, 850
BlsI	GCNGC	5 cut(s)	78, 81, 596, 763, 851
BmcAI	AGTACT	1 cut(s)	997
Bme1390I	CCNGG	2 cut(s)	355, 475
Bme18I	GGWCC	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	2 cut(s)	482, 575
BmrFI	CCNGG	2 cut(s)	355, 475
BmsI	GCATC	3 cut(s)	301, 634, 676
BpmI	CTGGAG	1 cut(s)	376
Bpu14I	TTCGAA	2 cut(s)	106, 875
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	1 cut(s)	982
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 619, 729
Bse118I	RCCGGY	1 cut(s)	858
Bse1I	ACTGG	1 cut(s)	967
BseBI	CCWGG	1 cut(s)	355
BseCI	ATCGAT	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	982
BseGI	GGATG	4 cut(s)	316, 609, 649, 691
BseLI	CCNNNNNNNGG	3 cut(s)	501, 619, 729
BseMII	CTCAG	2 cut(s)	547, 771
BseNI	ACTGG	1 cut(s)	967
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	4 cut(s)	88, 91, 581, 861
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	324, 970
BshVI	ATCGAT	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	3 cut(s)	249, 475, 859
BslFI	GGGAC	2 cut(s)	518, 587
BslI	CCNNNNNNNGG	3 cut(s)	501, 619, 729
BsmAI	GTCTC	1 cut(s)	776
BsmFI	GGGAC	2 cut(s)	518, 587
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	324, 970
Bso31I	GGTCTC	1 cut(s)	776
BsoBI	CYCGRG	1 cut(s)	554
Bsp119I	TTCGAA	2 cut(s)	106, 875
Bsp1407I	TGTACA	1 cut(s)	1117
Bsp143I	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
BspACI	CCGC	5 cut(s)	308, 314, 436, 761, 852
BspANI	GGCC	2 cut(s)	324, 970
BspCNI	CTCAG	2 cut(s)	546, 772
BspDI	ATCGAT	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	2 cut(s)	39, 1128
BspLI	GGNNCC	2 cut(s)	482, 575
BspMAI	CTGCAG	2 cut(s)	78, 190
BspMI	ACCTGC	2 cut(s)	193, 853
BspPI	GGATC	4 cut(s)	146, 475, 488, 666
BspT104I	TTCGAA	2 cut(s)	106, 875
BspTNI	GGTCTC	1 cut(s)	776
BsrFI	RCCGGY	1 cut(s)	858
BsrGI	TGTACA	1 cut(s)	1117
BsrI	ACTGG	1 cut(s)	967
BssAI	RCCGGY	1 cut(s)	858
BssECI	CCNNGG	1 cut(s)	982
BssMI	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
BssT1I	CCWWGG	1 cut(s)	982
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	5 cut(s)	262, 268, 283, 640, 1000
Bst6I	CTCTTC	1 cut(s)	999
BstAUI	TGTACA	1 cut(s)	1117
BstBI	TTCGAA	2 cut(s)	106, 875
BstC8I	GCNNGC	2 cut(s)	322, 326
BstDEI	CTNAG	3 cut(s)	533, 650, 780
BstEII	GGTNACC	2 cut(s)	431, 854
BstENI	CCTNNNNNAGG	1 cut(s)	727
BstF5I	GGATG	4 cut(s)	316, 609, 649, 691
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	993
BstKTI	GATC	6 cut(s)	154, 223, 274, 483, 620, 674
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	695
BstNI	CCWGG	1 cut(s)	355
BstPI	GGTNACC	2 cut(s)	431, 854
BstSCI	CCNGG	2 cut(s)	353, 473
BstSFI	CTRYAG	2 cut(s)	74, 186
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	4 cut(s)	88, 91, 581, 861
BstX2I	RGATCY	2 cut(s)	480, 671
BstYI	RGATCY	2 cut(s)	480, 671
Bsu15I	ATCGAT	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	324, 970
BsuTUI	ATCGAT	1 cut(s)	562
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	4 cut(s)	316, 609, 649, 691
BtsIMutI	CAGTG	1 cut(s)	1076
BveI	ACCTGC	2 cut(s)	193, 853
Cac8I	GCNNGC	2 cut(s)	322, 326
CciI	TCATGA	2 cut(s)	39, 1128
CfoI	GCGC	1 cut(s)	993
Cfr10I	RCCGGY	1 cut(s)	858
Cfr13I	GGNCC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	562
Csp6I	GTAC	4 cut(s)	258, 719, 996, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	6 cut(s)	40, 523, 776, 949, 1106, 1129
CviQI	GTAC	4 cut(s)	258, 719, 996, 1118
DdeI	CTNAG	3 cut(s)	533, 650, 780
DpnI	GATC	6 cut(s)	153, 222, 273, 482, 619, 673
DpnII	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
Eam1104I	CTCTTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	999
Eco130I	CCWWGG	1 cut(s)	982
Eco147I	AGGCCT	1 cut(s)	970
Eco31I	GGTCTC	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	1100
Eco88I	CYCGRG	1 cut(s)	554
Eco91I	GGTNACC	2 cut(s)	431, 854
EcoNI	CCTNNNNNAGG	1 cut(s)	727
EcoO65I	GGTNACC	2 cut(s)	431, 854
EcoRI	GAATTC	4 cut(s)	63, 549, 584, 1124
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	982
FaeI	CATG	6 cut(s)	43, 526, 779, 952, 1109, 1132
FaqI	GGGAC	2 cut(s)	518, 587
FatI	CATG	6 cut(s)	39, 522, 775, 948, 1105, 1128
FauNDI	CATATG	2 cut(s)	299, 590
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	77, 80, 595, 762, 850
FokI	GGATG	4 cut(s)	323, 596, 656, 698
Fsp4HI	GCNGC	5 cut(s)	77, 80, 595, 762, 850
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	1 cut(s)	992
GluI	GCNGC	5 cut(s)	77, 80, 595, 762, 850
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	2 cut(s)	324, 970
HapII	CCGG	3 cut(s)	249, 475, 859
HhaI	GCGC	1 cut(s)	993
Hin1II	CATG	6 cut(s)	43, 526, 779, 952, 1109, 1132
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HinfI	GANTC	2 cut(s)	226, 891
HpaII	CCGG	3 cut(s)	249, 475, 859
HphI	GGTGA	3 cut(s)	238, 407, 832
Hpy166II	GTNNAC	2 cut(s)	246, 738
Hpy188I	TCNGA	6 cut(s)	53, 118, 225, 536, 676, 1160
Hpy188III	TCNNGA	8 cut(s)	40, 177, 197, 410, 554, 629, 895, 1129
Hpy8I	GTNNAC	2 cut(s)	246, 738
HpyAV	CCTTC	5 cut(s)	234, 380, 810, 953, 960
HpyCH4III	ACNGT	5 cut(s)	262, 268, 283, 640, 1000
HpyCH4IV	ACGT	2 cut(s)	391, 869
HpyCH4V	TGCA	6 cut(s)	76, 129, 188, 303, 328, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	695
HpyF3I	CTNAG	3 cut(s)	533, 650, 780
HpySE526I	ACGT	2 cut(s)	391, 869
Hsp92II	CATG	6 cut(s)	43, 526, 779, 952, 1109, 1132
HspAI	GCGC	1 cut(s)	991
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
LmnI	GCTCC	2 cut(s)	94, 988
Lsp1109I	GCAGC	4 cut(s)	88, 91, 581, 861
LweI	GCATC	3 cut(s)	301, 634, 676
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	2 cut(s)	391, 869
MaeIII	GTNAC	6 cut(s)	213, 262, 289, 431, 854, 865
MalI	GATC	6 cut(s)	153, 222, 273, 482, 619, 673
MboI	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
MboII	GAAGA	3 cut(s)	910, 1016, 1093
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	2 cut(s)	480, 671
MmeI	TCCRAC	1 cut(s)	663
MseI	TTAA	4 cut(s)	56, 827, 1031, 1092
MspA1I	CMGCKG	1 cut(s)	852
MspI	CCGG	3 cut(s)	249, 475, 859
MspR9I	CCNGG	2 cut(s)	355, 475
MunI	CAATTG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	355
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	695
NciI	CCSGG	1 cut(s)	475
NdeI	CATATG	2 cut(s)	299, 590
NdeII	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
NlaIII	CATG	6 cut(s)	43, 526, 779, 952, 1109, 1132
NlaIV	GGNNCC	2 cut(s)	482, 575
NspV	TTCGAA	2 cut(s)	106, 875
PagI	TCATGA	2 cut(s)	39, 1128
PceI	AGGCCT	1 cut(s)	970
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	226, 891
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	78, 81, 596, 763, 851
Psp6I	CCWGG	1 cut(s)	353
PspEI	GGTNACC	2 cut(s)	431, 854
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	482, 575
PspPI	GGNCC	1 cut(s)	574
PsrI	GAACNNNNNNTAC	2 cut(s)	512, 544
PstI	CTGCAG	2 cut(s)	78, 190
PsuI	RGATCY	2 cut(s)	480, 671
RsaI	GTAC	4 cut(s)	259, 720, 997, 1119
RsaNI	GTAC	4 cut(s)	258, 719, 996, 1118
SaqAI	TTAA	4 cut(s)	56, 827, 1031, 1092
SatI	GCNGC	5 cut(s)	77, 80, 595, 762, 850
Sau3AI	GATC	6 cut(s)	151, 220, 271, 480, 617, 671
Sau96I	GGNCC	1 cut(s)	574
ScaI	AGTACT	1 cut(s)	997
ScrFI	CCNGG	2 cut(s)	355, 475
SfaNI	GCATC	3 cut(s)	301, 634, 676
SfcI	CTRYAG	2 cut(s)	74, 186
SfuI	TTCGAA	2 cut(s)	106, 875
SinI	GGWCC	1 cut(s)	574
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
SseBI	AGGCCT	1 cut(s)	970
SsiI	CCGC	5 cut(s)	308, 314, 436, 761, 852
SspMI	CTAG	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	970
StyD4I	CCNGG	2 cut(s)	353, 473
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	5 cut(s)	262, 268, 283, 640, 1000
TaiI	ACGT	2 cut(s)	394, 872
TaqI	TCGA	5 cut(s)	106, 340, 562, 875, 1002
TatI	WGTACW	2 cut(s)	995, 1117
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	226, 891
Tru1I	TTAA	4 cut(s)	56, 827, 1031, 1092
Tru9I	TTAA	4 cut(s)	56, 827, 1031, 1092
TscAI	CASTG	1 cut(s)	1083
TseI	GCWGC	4 cut(s)	76, 79, 594, 849
TspDTI	ATGAA	8 cut(s)	28, 56, 74, 149, 286, 577, 1117, 1144
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	1 cut(s)	1083
VpaK11BI	GGWCC	1 cut(s)	574
XagI	CCTNNNNNAGG	1 cut(s)	727
XapI	RAATTY	4 cut(s)	63, 549, 584, 1124
XspI	CTAG	1 cut(s)	729
ZrmI	AGTACT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.