Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010978

Physical Location & Seq

Genomic Coordinates Reverse (-)

15851340 .. 15853250

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G195400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCATTCTCATCACAGAGTGGTTTCTATATTTCTGTGTTGGATGAGATTACACTTGGCTCCAAATCCAAAGGGGATTATAAGTTTTGTCCCCCCTTCAATTCTTCACAATATAAGGATTCAAATTCAAGAGCTTTTCCTGTGTTGAGTTGTGATTTCTTGGGCAAACCCATTATTGTCTCAGATCAAAAGGGTTTTGAGAATTGGAAGGTCAAAACGCCAAGCAATTTCTCTGTTCATGCCCAAGCATCTATCTGTGTAAGCCGAGCTATGAAATGGTGGGAGAAGACCCTTCATCCCAACATGGTGGAGATCCATTCTGCTCAAGAGCTTGTTGATTCCTTGAAGAACGCTGGAGATAGATTGGTTGTAGTTGACTTCTACTCACCTGGTTGTGGAGGTTGCAGAGCTCTCCATCCCAAGATCTGTCAGCTGGCTGAATTGAACCCAGATGCAATTTTTCTTAAAGTTAACTATGAGGAGCTCAAGACTATGTGTCATGCCCTCAACATTCATGTGCTGCCATTCTTTAGGTTCTACAAAGGTGCAGAAGGTCGTGTATGTAGCTTCAGCTGCACCAATGCCACTATTAAGAAATTCAAAGATGCAATGGCAAAACATGGGACTGGCCGTTGTAATCTTGGGGGCCCAGCAAAAGGTTTAGATGAATCTGAGATGTTAAAGTTAGCTTCAATAGGTGAATTATCAACAACATCATCATCACCTTCCATCAAGGAAGAAAGAGTGGAGGATCTAGTCACAGAAATTATAGATATGGCTGGTGTTTGGAGCAATGCAAGCCATAATATAGGGCTTCAAGAAGAAAGTTCCATGGTGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

282

Amino Acids

30.97

Weight (kDa)

7.06

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61440 AT5G61440
fragaria_vesca	FvH4_5g14700
malus_domestica	MD06G1195500.v1.1 MD14G1202600.v1.1 MD16G1196100.v1.1
prunus_persica	Prupe.5G195400_v2.0.a1 Prupe.5G195400_v2.0.a1
pyrus_communis	pycom06g17270 pycom14g16750
rosa_chinensis	RchiOBHm_Chr7g0181691
rosa_laevigata	RLG00000005176
rosa_multiflora	Rmu_sc0000988.1_g000011
rosa_roxburghii	Rroxscaffold_3G00271800
rosa_rugosa	Rorug06G0442800
rosa_samantha	Rh7AG045300 Rh7BG044500 Rh7CG046000 Rh7DG044900
rosa_wichuraiana	Rw7G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AclWI	GGATC	2 cut(s)	307, 759
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	124, 596
AcuI	CTGAAG	1 cut(s)	553
AdeI	CACNNNGTG	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	395, 656
AgsI	TTSAA	8 cut(s)	100, 123, 129, 346, 445, 601, 693, 818
AhdI	GACNNNNNGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	388
Alw21I	GWGCWC	2 cut(s)	412, 486
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	307, 759
AoxI	GGCC	2 cut(s)	628, 646
ApaI	GGGCCC	1 cut(s)	650
ApeKI	GCWGC	2 cut(s)	520, 573
ApoI	RAATTY	2 cut(s)	124, 596
AspS9I	GGNCC	2 cut(s)	646, 647
AsuHPI	GGTGA	3 cut(s)	378, 710, 714
BaeGI	GKGCMC	1 cut(s)	650
BanII	GRGCYC	3 cut(s)	412, 486, 650
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	2 cut(s)	412, 486
BbvI	GCAGC	2 cut(s)	507, 560
BccI	CCATC	2 cut(s)	423, 737
BceAI	ACGGC	1 cut(s)	615
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	755
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	2 cut(s)	521, 574
BlsI	GCNGC	2 cut(s)	522, 575
Bme1390I	CCNGG	1 cut(s)	390
BmeRI	GACNNNNNGTC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	646, 647
BmiI	GGNNCC	3 cut(s)	61, 647, 648
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	3 cut(s)	257, 442, 595
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	309, 470
BsaJI	CCNNGG	1 cut(s)	831
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 656
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	2 cut(s)	615, 799
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	831
BseGI	GGATG	3 cut(s)	49, 295, 415
BseLI	CCNNNNNNNGG	2 cut(s)	395, 656
BseMI	GCAATG	2 cut(s)	615, 799
BseMII	CTCAG	2 cut(s)	195, 663
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	507, 560
BseYI	CCCAGC	1 cut(s)	649
BsgI	GTGCAG	2 cut(s)	559, 567
BshFI	GGCC	2 cut(s)	630, 648
BsiHKAI	GWGCWC	2 cut(s)	412, 486
BslFI	GGGAC	2 cut(s)	75, 637
BslI	CCNNNNNNNGG	2 cut(s)	395, 656
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	75, 637
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	630, 648
Bsp120I	GGGCCC	1 cut(s)	646
Bsp1286I	GDGCHC	3 cut(s)	412, 486, 650
Bsp143I	GATC	4 cut(s)	184, 312, 423, 751
Bsp19I	CCATGG	1 cut(s)	831
BspANI	GGCC	2 cut(s)	630, 648
BspCNI	CTCAG	2 cut(s)	194, 664
BspLI	GGNNCC	3 cut(s)	61, 647, 648
BspPI	GGATC	2 cut(s)	307, 759
BsrDI	GCAATG	2 cut(s)	615, 799
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	831
BssMI	GATC	4 cut(s)	184, 312, 423, 751
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	435, 799
BstDEI	CTNAG	2 cut(s)	181, 672
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	3 cut(s)	49, 295, 415
BstKTI	GATC	4 cut(s)	187, 315, 426, 754
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	4 cut(s)	184, 312, 423, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	573, 798
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	507, 560
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	3 cut(s)	312, 423, 751
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	3 cut(s)	312, 423, 751
BsuRI	GGCC	2 cut(s)	630, 648
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	3 cut(s)	49, 295, 415
Cac8I	GCNNGC	2 cut(s)	435, 799
Cfr13I	GGNCC	2 cut(s)	646, 647
CsiI	ACCWGGT	1 cut(s)	388
CviAII	CATG	6 cut(s)	239, 304, 500, 515, 620, 832
DdeI	CTNAG	2 cut(s)	181, 672
DpnI	GATC	4 cut(s)	186, 314, 425, 753
DpnII	GATC	4 cut(s)	184, 312, 423, 751
DraIII	CACNNNGTG	1 cut(s)	20
DriI	GACNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	628
Eam1105I	GACNNNNNGTC	1 cut(s)	495
Ecl136II	GAGCTC	2 cut(s)	410, 484
Eco130I	CCWWGG	1 cut(s)	831
Eco24I	GRGCYC	3 cut(s)	412, 486, 650
Eco53kI	GAGCTC	2 cut(s)	410, 484
Eco57I	CTGAAG	1 cut(s)	553
EcoICRI	GAGCTC	2 cut(s)	410, 484
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	831
EcoT38I	GRGCYC	3 cut(s)	412, 486, 650
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	6 cut(s)	242, 307, 503, 518, 623, 835
FaqI	GGGAC	2 cut(s)	75, 637
FatI	CATG	6 cut(s)	238, 303, 499, 514, 619, 831
Fnu4HI	GCNGC	2 cut(s)	521, 574
FokI	GGATG	3 cut(s)	56, 282, 402
FriOI	GRGCYC	3 cut(s)	412, 486, 650
Fsp4HI	GCNGC	2 cut(s)	521, 574
FspBI	CTAG	1 cut(s)	755
GluI	GCNGC	2 cut(s)	521, 574
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	630, 648
Hin1II	CATG	6 cut(s)	242, 307, 503, 518, 623, 835
HincII	GTYRAC	2 cut(s)	376, 472
HindII	GTYRAC	2 cut(s)	376, 472
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	3 cut(s)	119, 338, 668
HpaI	GTTAAC	1 cut(s)	472
HphI	GGTGA	3 cut(s)	378, 710, 714
Hpy166II	GTNNAC	2 cut(s)	376, 472
Hpy188I	TCNGA	2 cut(s)	184, 673
Hpy188III	TCNNGA	4 cut(s)	129, 326, 487, 818
Hpy8I	GTNNAC	2 cut(s)	376, 472
HpyAV	CCTTC	5 cut(s)	106, 202, 302, 545, 735
HpyCH4V	TGCA	6 cut(s)	405, 455, 548, 576, 608, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	573, 798
HpyF3I	CTNAG	2 cut(s)	181, 672
Hsp92II	CATG	6 cut(s)	242, 307, 503, 518, 623, 835
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	184, 312, 423, 751
LmnI	GCTCC	3 cut(s)	65, 481, 789
LpnPI	CCDG	9 cut(s)	153, 339, 375, 402, 419, 462, 612, 663, 765
Lsp1109I	GCAGC	2 cut(s)	507, 560
LweI	GCATC	3 cut(s)	257, 442, 595
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	1 cut(s)	755
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	4 cut(s)	186, 314, 425, 753
MboI	GATC	4 cut(s)	184, 312, 423, 751
MboII	GAAGA	5 cut(s)	96, 298, 358, 749, 833
MflI	RGATCY	3 cut(s)	312, 423, 751
MhlI	GDGCHC	3 cut(s)	412, 486, 650
MluCI	AATT	9 cut(s)	100, 124, 202, 226, 440, 456, 596, 701, 765
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	4 cut(s)	392, 472, 515, 742
MseI	TTAA	5 cut(s)	465, 471, 591, 680, 844
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	433, 573
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	573, 798
NcoI	CCATGG	1 cut(s)	831
NdeII	GATC	4 cut(s)	184, 312, 423, 751
NlaIII	CATG	6 cut(s)	242, 307, 503, 518, 623, 835
NlaIV	GGNNCC	3 cut(s)	61, 647, 648
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	757
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	3 cut(s)	119, 338, 668
PkrI	GCNGC	2 cut(s)	522, 575
PsiI	TTATAA	1 cut(s)	81
Psp124BI	GAGCTC	2 cut(s)	412, 486
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	61, 647, 648
PspOMI	GGGCCC	1 cut(s)	646
PspPI	GGNCC	2 cut(s)	646, 647
PsuI	RGATCY	3 cut(s)	312, 423, 751
PvuII	CAGCTG	2 cut(s)	433, 573
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	2 cut(s)	412, 486
SaqAI	TTAA	5 cut(s)	465, 471, 591, 680, 844
SatI	GCNGC	2 cut(s)	521, 574
Sau3AI	GATC	4 cut(s)	184, 312, 423, 751
Sau96I	GGNCC	2 cut(s)	646, 647
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	3 cut(s)	412, 486, 650
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	3 cut(s)	257, 442, 595
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	324, 485
SmoI	CTYRAG	2 cut(s)	324, 485
Sse9I	AATT	9 cut(s)	100, 124, 202, 226, 440, 456, 596, 701, 765
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	2 cut(s)	412, 486
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	831
TasI	AATT	9 cut(s)	100, 124, 202, 226, 440, 456, 596, 701, 765
TfiI	GAWTC	3 cut(s)	119, 338, 668
Tru1I	TTAA	5 cut(s)	465, 471, 591, 680, 844
Tru9I	TTAA	5 cut(s)	465, 471, 591, 680, 844
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	2 cut(s)	520, 573
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	5 cut(s)	227, 284, 287, 503, 681
XapI	RAATTY	2 cut(s)	124, 596
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.