Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000988.1

Orthogroup ID

OG0010978

Physical Location & Seq

Genomic Coordinates Forward (+)

49664 .. 50804

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000988.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atggcaatttcatcaaagtgtggtttgtacatttctggggtaaatgagatgagtctgcgctccaaattcacagaatcaaattcaagagcttttcctgttttgggtgttgttttttggggaaaacccatctcagatcacaagggtttgaagaatttgagggtcaaggccccgagaaatttctctgttcatgcacaagcatcaatctgtgtaagcaaagctatgaaatggtgggagaaaaccctaaaacccaacatggtggagatccattctgctcaagaactcattgattctttgcataatgctggtgatagattggttgtagtggatttttactcacctggttgtggaggttgtagagctctccatcccaagatctgtcagctggctgaacagaacccagatgcaatttttcttaaggttaactatgaggagctaaagactatgtgctatggtctccacattcatgtgctaccattctttaggttttatagaggcgcagaagggcgagtttgtagcttcagctgcaccaatgccactatcaagaaattcaaagatgcattagctaaatatggggctgagggttgtagtcctggcccagcaaaaggcttggatgagtctgagatattgcacttagctgagataggtgaaatatcagcaagatcttctccaccatcaaccaaagaagagagagttgaggaggatttggtcatgaaaagcatagatttgtctggtgtttggagcaatgtaatccataaccatggcgtagaactcgaagaagaagaaagtgccttgctgaaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

267

Amino Acids

29.57

Weight (kDa)

7.12

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61440 AT5G61440
fragaria_vesca	FvH4_5g14700
malus_domestica	MD06G1195500.v1.1 MD14G1202600.v1.1 MD16G1196100.v1.1
prunus_persica	Prupe.5G195400_v2.0.a1 Prupe.5G195400_v2.0.a1
pyrus_communis	pycom06g17270 pycom14g16750
rosa_chinensis	RchiOBHm_Chr7g0181691
rosa_laevigata	RLG00000005176
rosa_multiflora	Rmu_sc0000988.1_g000011
rosa_roxburghii	Rroxscaffold_3G00271800
rosa_rugosa	Rorug06G0442800
rosa_samantha	Rh7AG045300 Rh7BG044500 Rh7CG046000 Rh7DG044900
rosa_wichuraiana	Rw7G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	5 cut(s)	65, 79, 151, 175, 545
AcuI	CTGAAG	1 cut(s)	502
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	101, 344, 602
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	84, 148, 550
AjnI	CCWGG	2 cut(s)	337, 589
AluBI	AGCT	9 cut(s)	89, 218, 359, 382, 433, 516, 522, 563, 635
AluI	AGCT	9 cut(s)	89, 218, 359, 382, 433, 516, 522, 563, 635
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	165, 592
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	5 cut(s)	65, 79, 151, 175, 545
AspLEI	GCGC	2 cut(s)	60, 497
AspS9I	GGNCC	2 cut(s)	166, 593
AsuHPI	GGTGA	3 cut(s)	317, 327, 656
AvaI	CYCGRG	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	3 cut(s)	134, 372, 679
BciT130I	CCWGG	2 cut(s)	339, 591
BcoDI	GTCTC	1 cut(s)	458
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	2 cut(s)	372, 659
BisI	GCNGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	339, 591
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	166, 593
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	339, 591
BmsI	GCATC	3 cut(s)	206, 391, 544
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 344, 602
Bse3DI	GCAATG	1 cut(s)	748
BseBI	CCWGG	2 cut(s)	339, 591
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	2 cut(s)	364, 616
BseLI	CCNNNNNNNGG	3 cut(s)	101, 344, 602
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	4 cut(s)	144, 567, 609, 627
BseRI	GAGGAG	2 cut(s)	443, 710
BseXI	GCAGC	1 cut(s)	509
BseYI	CCCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	167, 594
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	101, 344, 602
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	167, 594
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	133, 261, 372, 659
Bsp19I	CCATGG	1 cut(s)	757
BspANI	GGCC	2 cut(s)	167, 594
BspCNI	CTCAG	4 cut(s)	143, 568, 610, 628
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	256
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	748
BsrGI	TGTACA	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	4 cut(s)	133, 261, 372, 659
BssT1I	CCWWGG	1 cut(s)	757
Bst2UI	CCWGG	2 cut(s)	339, 591
Bst6I	CTCTTC	1 cut(s)	678
BstAFI	CTTAAG	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	130, 576, 618, 631, 636
BstDSI	CCRYGG	1 cut(s)	757
BstF5I	GGATG	2 cut(s)	364, 616
BstHHI	GCGC	2 cut(s)	60, 497
BstKTI	GATC	4 cut(s)	136, 264, 375, 662
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	4 cut(s)	133, 261, 372, 659
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstNI	CCWGG	2 cut(s)	339, 591
BstSCI	CCNGG	2 cut(s)	337, 589
BstV1I	GCAGC	1 cut(s)	509
BstX2I	RGATCY	3 cut(s)	261, 372, 659
BstXI	CCANNNNNNTGG	2 cut(s)	256, 758
BstYI	RGATCY	3 cut(s)	261, 372, 659
BsuRI	GGCC	2 cut(s)	167, 594
BtgI	CCRYGG	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	364, 616
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	2 cut(s)	60, 497
Cfr13I	GGNCC	2 cut(s)	166, 593
CsiI	ACCWGGT	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	5 cut(s)	188, 253, 464, 709, 758
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	5 cut(s)	130, 576, 618, 631, 636
DpnI	GATC	4 cut(s)	135, 263, 374, 661
DpnII	GATC	4 cut(s)	133, 261, 372, 659
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	337, 589
EcoT14I	CCWWGG	1 cut(s)	757
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	5 cut(s)	191, 256, 467, 712, 761
FatI	CATG	5 cut(s)	187, 252, 463, 708, 757
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	2 cut(s)	351, 623
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	523
GlaI	GCGC	2 cut(s)	59, 496
GluI	GCNGC	1 cut(s)	523
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	2 cut(s)	167, 594
HhaI	GCGC	2 cut(s)	60, 497
Hin1II	CATG	5 cut(s)	191, 256, 467, 712, 761
Hin6I	GCGC	2 cut(s)	58, 495
HinP1I	GCGC	2 cut(s)	58, 495
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	4 cut(s)	52, 74, 287, 614
HpaI	GTTAAC	1 cut(s)	421
HphI	GGTGA	3 cut(s)	317, 327, 656
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	133, 619
Hpy188III	TCNNGA	4 cut(s)	84, 275, 541, 709
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	494, 790
HpyCH4V	TGCA	6 cut(s)	191, 295, 404, 525, 557, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	5 cut(s)	130, 576, 618, 631, 636
Hsp92II	CATG	5 cut(s)	191, 256, 467, 712, 761
HspAI	GCGC	2 cut(s)	58, 495
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	133, 261, 372, 659
LmnI	GCTCC	3 cut(s)	65, 430, 738
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	3 cut(s)	206, 391, 544
MabI	ACCWGGT	1 cut(s)	337
MalI	GATC	4 cut(s)	135, 263, 374, 661
MboI	GATC	4 cut(s)	133, 261, 372, 659
MboII	GAAGA	6 cut(s)	160, 654, 695, 785, 788, 791
MflI	RGATCY	3 cut(s)	261, 372, 659
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	7 cut(s)	6, 65, 79, 151, 175, 405, 545
MlyI	GAGTC	2 cut(s)	61, 623
MnlI	CCTC	7 cut(s)	150, 341, 421, 485, 571, 688, 691
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	2 cut(s)	414, 420
MslI	CAYNNNNRTG	4 cut(s)	16, 462, 464, 756
MspA1I	CMGCKG	2 cut(s)	382, 522
MspCI	CTTAAG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	339, 591
MvaI	CCWGG	2 cut(s)	339, 591
MwoI	GCNNNNNNNGC	1 cut(s)	522
NcoI	CCATGG	1 cut(s)	757
NdeII	GATC	4 cut(s)	133, 261, 372, 659
NlaIII	CATG	5 cut(s)	191, 256, 467, 712, 761
NlaIV	GGNNCC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	559
PagI	TCATGA	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	74, 287
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	2 cut(s)	60, 622
PpsI	GAGTC	2 cut(s)	60, 622
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	337, 589
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	2 cut(s)	337, 589
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	166, 593
PsuI	RGATCY	3 cut(s)	261, 372, 659
PvuII	CAGCTG	2 cut(s)	382, 522
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	4 cut(s)	16, 462, 464, 756
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	2 cut(s)	414, 420
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	4 cut(s)	133, 261, 372, 659
Sau96I	GGNCC	2 cut(s)	166, 593
SchI	GAGTC	2 cut(s)	61, 623
ScrFI	CCNGG	2 cut(s)	339, 591
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	206, 391, 544
SmiMI	CAYNNNNRTG	4 cut(s)	16, 462, 464, 756
SmlI	CTYRAG	2 cut(s)	273, 413
SmoI	CTYRAG	2 cut(s)	273, 413
Sse9I	AATT	7 cut(s)	6, 65, 79, 151, 175, 405, 545
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	337, 589
StyI	CCWWGG	1 cut(s)	757
TaqI	TCGA	1 cut(s)	771
TasI	AATT	7 cut(s)	6, 65, 79, 151, 175, 405, 545
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	74, 287
Tru1I	TTAA	2 cut(s)	414, 420
Tru9I	TTAA	2 cut(s)	414, 420
TseI	GCWGC	1 cut(s)	522
TspDTI	ATGAA	4 cut(s)	176, 236, 452, 725
Vha464I	CTTAAG	1 cut(s)	413
XapI	RAATTY	5 cut(s)	65, 79, 151, 175, 545
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.