Prupe.5G208300_v2.0.a1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
16610165 .. 16614774
4610 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G208300.7

Sequence Viewer

Length: 1680 bp
ATGGAGTCTTGGAGCCGTATTTCTGAAGGGAAGGGGTTTGTTTCCGAAGAAACAATTTCACACACTGATTCATTTTCTAGAAGTAGAAATACTTTGATGGGTTGGGAATTGAAAATCCCCTGTACTTTTGGCAGCAATGTTTTAGTGTCAGGCCAGCAAGCTATTGAAAGTCAGGGTTTTGGGGAGTTGGGTTTTCCAGAAATGATGGGCAAACATTTCTCAAATAATCCAATTAGAGATGTATTGAGTGGCAAGGTTTATGGTGAAAGAAGTACTAATACAACAAGTATGGCTACCCCAAATTTATTTTCAGGAGAAGATGAATCATCTTCAAAGCTTTCAAGCTCTATTGTGGACTCTAACAGTAGGGATTCTTCACTCATTGATTTAAAACTAGGGAGGTTGGCTGATAACAGAGATTTCCATGATTCTAAATTTTCTAAAGGACATCCCATATTGTCTTCATCCGAATCATCGACACCTCCAAAGCGAATGCGGGTGTCAGGATTGTATTCTCAGACCGCCTACTGTCAGGTTTATGGTTGCAACAAGGATCTCAGCTCCTCTAAGGACTACCACAAGAGGCATAAAGTTTGTGAGGCTCACTCAAAGACGGCCAAAGTTATTGTGAATGGCAGAGAACAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAGTTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGACACAATGAGCGTCGGAGAAAGCCTCAAGTGGGGATTCACTCTGGAAGAGCTGGTAGGTTGCTTCAGTCGTATAATGGCAGCAGATTTCAGGATAATATGTTAACAACTGCATCTTTTATCTGCCAAGAGATACTCCCCAGTGGAATTTTGGATGCTGAAAATTATGGAACAAATGACTGGTGCAGGCATTTAAAAGTTGAAGATGCGACTCATTATAGGCCTTTGTCAGGGGTTCCTGTTACAAATGGGCATCTGCCTTTGAAACCAGCCTTTCCTTCTTATGATATTGGAAAACGGTACCCCCCATTTCATGACAATGGAACTAATCCTCTAACTGGAAACATAATCATTGAGAATGGCAGTCAATATTCACATGATATGAGAGGCCTAAATTCTGGTTCACACTCTATGTTTCATGAGACCACCACATTAGGAAGTGAAGACTTCAATGTGTTCAACACTGCTTCAACTGTACATGGATTATCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAGTCACAGAAATCTTCAAGCCATTTGTCAGGAATTCCCATGGCTAGCCCCCTGGTCATGCCGGACAGGCATACCAATTACAGGCTGGTTCAAGGTTCTGAAAATCTTATTGGGGGATGCTCACATGCCTCCTCTAGTGGGGTTTCAAATAAATTCCCTTCTTCAGGAATGAATTCTGGAGCTGGGACTCACCTGGGTCCCATACTTCTATGTAATGGCAGTGATACTGATGATTTTGGAATCTCAGATGGGATTTTCCAAGGATCAGATTTTGTGAATGCCAAAGATCGTCTGTCCTGCGAAGATGGGACCACTATCGACTTGCTTCAGCTTTCCTCACAGCTCCAACGAGTAGAGGATCAACGGCAATCCATGCAGGTGAAGCAGGAAAGTGATGCTTTCTGCTGCCTCAGAATCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

61.26

Weight (kDa)

7.07

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1624
Acc36I ACCTGC 1 cut(s) 1624
Acc65I GGTACC 1 cut(s) 1026
AccB1I GGYRCC 1 cut(s) 1026
AciI CCGC 2 cut(s) 496, 522
AclWI GGATC 3 cut(s) 561, 1528, 1623
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 8 cut(s) 301, 434, 873, 1120, 1218, 1290, 1409, 1429
AcuI CTGAAG 4 cut(s) 45, 776, 1404, 1568
AfaI GTAC 4 cut(s) 124, 274, 1028, 1203
AfiI CCNNNNNNNGG 6 cut(s) 758, 956, 1064, 1338, 1395, 1421
AjnI CCWGG 2 cut(s) 1308, 1449
AjuI GAANNNNNNNTTGG 4 cut(s) 292, 324, 1350, 1382
AluBI AGCT 9 cut(s) 161, 337, 345, 561, 708, 779, 1439, 1588, 1600
AluI AGCT 9 cut(s) 161, 337, 345, 561, 708, 779, 1439, 1588, 1600
Alw21I GWGCWC 1 cut(s) 1240
Alw26I GTCTC 1 cut(s) 1142
AlwI GGATC 3 cut(s) 561, 1528, 1623
AlwNI CAGNNNCTG 1 cut(s) 1229
AoxI GGCC 4 cut(s) 151, 615, 947, 1114
ApeKI GCWGC 3 cut(s) 132, 807, 1662
ApoI RAATTY 8 cut(s) 301, 434, 873, 1120, 1218, 1290, 1409, 1429
Asp700I GAANNNNTTC 1 cut(s) 1429
Asp718I GGTACC 1 cut(s) 1026
AspS9I GGNCC 2 cut(s) 1454, 1566
AsuHPI GGTGA 3 cut(s) 275, 1439, 1648
AsuNHI GCTAGC 1 cut(s) 1301
AvaII GGWCC 2 cut(s) 1454, 1566
BanI GGYRCC 1 cut(s) 1026
BarI GAAGNNNNNNTAC 6 cut(s) 73, 105, 262, 294, 358, 390
BbsI GAAGAC 2 cut(s) 453, 1176
Bbv12I GWGCWC 1 cut(s) 1240
BbvI GCAGC 3 cut(s) 144, 819, 1649
BccI CCATC 5 cut(s) 91, 199, 689, 1499, 1556
BceAI ACGGC 2 cut(s) 630, 1637
BciT130I CCWGG 2 cut(s) 1310, 1451
BcoDI GTCTC 1 cut(s) 1142
BfaI CTAG 4 cut(s) 78, 395, 1302, 1392
BfuAI ACCTGC 1 cut(s) 1624
BglI GCCNNNNNGGC 1 cut(s) 1324
BisI GCNGC 3 cut(s) 133, 808, 1663
BlsI GCNGC 3 cut(s) 134, 809, 1664
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 2 cut(s) 1310, 1451
Bme18I GGWCC 2 cut(s) 1454, 1566
BmgT120I GGNCC 2 cut(s) 1454, 1566
BmiI GGNNCC 6 cut(s) 14, 963, 1028, 1455, 1456, 1567
BmrFI CCNGG 2 cut(s) 1310, 1451
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 6 cut(s) 848, 871, 922, 988, 1364, 1642
BmtI GCTAGC 1 cut(s) 1305
BmuI ACTGGG 1 cut(s) 861
BpiI GAAGAC 2 cut(s) 453, 1176
BplI GAGNNNNNCTC 4 cut(s) 590, 622, 736, 768
BpmI CTGGAG 1 cut(s) 1455
BpuEI CTTGAG 1 cut(s) 738
BsaI GGTCTC 1 cut(s) 1142
BsaJI CCNNGG 4 cut(s) 1296, 1308, 1450, 1516
Bsc4I CCNNNNNNNGG 6 cut(s) 758, 956, 1064, 1338, 1395, 1421
Bse1I ACTGG 3 cut(s) 867, 911, 1069
Bse3DI GCAATG 2 cut(s) 142, 665
BseBI CCWGG 2 cut(s) 1310, 1451
BseDI CCNNGG 4 cut(s) 1296, 1308, 1450, 1516
BseGI GGATG 4 cut(s) 448, 464, 886, 1379
BseLI CCNNNNNNNGG 6 cut(s) 758, 956, 1064, 1338, 1395, 1421
BseMI GCAATG 2 cut(s) 142, 665
BseMII CTCAG 5 cut(s) 530, 571, 675, 1271, 1515
BseNI ACTGG 3 cut(s) 867, 911, 1069
BseRI GAGGAG 2 cut(s) 553, 1378
BseXI GCAGC 3 cut(s) 144, 819, 1649
BseYI CCCAGC 1 cut(s) 1439
BsgI GTGCAG 1 cut(s) 931
BshFI GGCC 4 cut(s) 153, 617, 949, 1116
BshNI GGYRCC 1 cut(s) 1026
BsiHKAI GWGCWC 1 cut(s) 1240
BsiSI CCGG 1 cut(s) 1319
BslFI GGGAC 3 cut(s) 1440, 1456, 1579
BslI CCNNNNNNNGG 6 cut(s) 758, 956, 1064, 1338, 1395, 1421
BsmAI GTCTC 1 cut(s) 1142
BsmFI GGGAC 3 cut(s) 1440, 1456, 1579
BsmI GAATGC 2 cut(s) 498, 1540
BsnI GGCC 4 cut(s) 153, 617, 949, 1116
Bso31I GGTCTC 1 cut(s) 1142
Bsp1286I GDGCHC 1 cut(s) 1240
Bsp1407I TGTACA 1 cut(s) 1201
Bsp143I GATC 4 cut(s) 553, 1520, 1543, 1615
Bsp19I CCATGG 1 cut(s) 1296
BspACI CCGC 2 cut(s) 496, 522
BspANI GGCC 4 cut(s) 153, 617, 949, 1116
BspCNI CTCAG 6 cut(s) 529, 570, 676, 1270, 1514, 1680
BspHI TCATGA 2 cut(s) 1039, 1144
BspLI GGNNCC 6 cut(s) 14, 963, 1028, 1455, 1456, 1567
BspMI ACCTGC 1 cut(s) 1624
BspOI GCTAGC 1 cut(s) 1305
BspPI GGATC 3 cut(s) 561, 1528, 1623
BspQI GCTCTTC 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 1026
BspTNI GGTCTC 1 cut(s) 1142
BsrDI GCAATG 2 cut(s) 142, 665
BsrGI TGTACA 1 cut(s) 1201
BsrI ACTGG 3 cut(s) 867, 911, 1069
BssECI CCNNGG 4 cut(s) 1296, 1308, 1450, 1516
BssMI GATC 4 cut(s) 553, 1520, 1543, 1615
BssT1I CCWWGG 2 cut(s) 1296, 1516
Bst2UI CCWGG 2 cut(s) 1310, 1451
Bst4CI ACNGT 4 cut(s) 365, 530, 1026, 1201
Bst6I CTCTTC 2 cut(s) 769, 1251
BstAPI GCANNNNNTGC 1 cut(s) 1630
BstAUI TGTACA 1 cut(s) 1201
BstC8I GCNNGC 5 cut(s) 155, 159, 681, 914, 1303
BstDEI CTNAG 7 cut(s) 516, 557, 567, 684, 1257, 1501, 1667
BstDSI CCRYGG 1 cut(s) 1296
BstENI CCTNNNNNAGG 2 cut(s) 954, 1419
BstF5I GGATG 4 cut(s) 448, 464, 886, 1379
BstKTI GATC 4 cut(s) 556, 1523, 1546, 1618
BstMAI GTCTC 1 cut(s) 1142
BstMBI GATC 4 cut(s) 553, 1520, 1543, 1615
BstMWI GCNNNNNNNGC 3 cut(s) 1324, 1630, 1639
BstNI CCWGG 2 cut(s) 1310, 1451
BstNSI RCATGY 1 cut(s) 1385
BstSCI CCNGG 2 cut(s) 1308, 1449
BstV1I GCAGC 3 cut(s) 144, 819, 1649
BstV2I GAAGAC 2 cut(s) 453, 1176
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 4 cut(s) 153, 617, 949, 1116
BtgI CCRYGG 1 cut(s) 1296
BtsCI GGATG 4 cut(s) 448, 464, 886, 1379
BtsI GCAGTG 2 cut(s) 1188, 1483
BtsIMutI CAGTG 4 cut(s) 63, 874, 1188, 1483
BveI ACCTGC 1 cut(s) 1624
Cac8I GCNNGC 5 cut(s) 155, 159, 681, 914, 1303
CaiI CAGNNNCTG 1 cut(s) 1229
CciI TCATGA 2 cut(s) 1039, 1144
Cfr13I GGNCC 2 cut(s) 1454, 1566
CseI GACGC 1 cut(s) 728
Csp6I GTAC 4 cut(s) 123, 273, 1027, 1202
CviAII CATG 9 cut(s) 425, 1040, 1103, 1145, 1205, 1297, 1315, 1382, 1630
CviQI GTAC 4 cut(s) 123, 273, 1027, 1202
DdeI CTNAG 7 cut(s) 516, 557, 567, 684, 1257, 1501, 1667
DpnI GATC 4 cut(s) 555, 1522, 1545, 1617
DpnII GATC 4 cut(s) 553, 1520, 1543, 1615
DraI TTTAAA 2 cut(s) 390, 921
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 769, 1251
EarI CTCTTC 2 cut(s) 769, 1251
Eco130I CCWWGG 2 cut(s) 1296, 1516
Eco147I AGGCCT 2 cut(s) 949, 1116
Eco31I GGTCTC 1 cut(s) 1142
Eco47I GGWCC 2 cut(s) 1454, 1566
Eco57I CTGAAG 4 cut(s) 45, 776, 1404, 1568
EcoNI CCTNNNNNAGG 2 cut(s) 954, 1419
EcoO109I RGGNCCY 1 cut(s) 1454
EcoRI GAATTC 2 cut(s) 1290, 1429
EcoRII CCWGG 2 cut(s) 1308, 1449
EcoT14I CCWWGG 2 cut(s) 1296, 1516
ErhI CCWWGG 2 cut(s) 1296, 1516
FaeI CATG 9 cut(s) 428, 1043, 1106, 1148, 1208, 1300, 1318, 1385, 1633
FalI AAGNNNNNCTT 2 cut(s) 1639, 1671
FaqI GGGAC 3 cut(s) 1440, 1456, 1579
FatI CATG 9 cut(s) 424, 1039, 1102, 1144, 1204, 1296, 1314, 1381, 1629
FauI CCCGC 1 cut(s) 489
Fnu4HI GCNGC 3 cut(s) 133, 808, 1663
FokI GGATG 4 cut(s) 435, 451, 893, 1386
Fsp4HI GCNGC 3 cut(s) 133, 808, 1663
FspBI CTAG 4 cut(s) 78, 395, 1302, 1392
GluI GCNGC 3 cut(s) 133, 808, 1663
GsaI CCCAGC 1 cut(s) 1443
GsuI CTGGAG 1 cut(s) 1455
HaeIII GGCC 4 cut(s) 153, 617, 949, 1116
HapII CCGG 1 cut(s) 1319
HgaI GACGC 1 cut(s) 728
Hin1II CATG 9 cut(s) 428, 1043, 1106, 1148, 1208, 1300, 1318, 1385, 1633
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HindIII AAGCTT 1 cut(s) 335
HpaI GTTAAC 1 cut(s) 831
HpaII CCGG 1 cut(s) 1319
HphI GGTGA 3 cut(s) 275, 1439, 1648
Hpy166II GTNNAC 4 cut(s) 355, 716, 831, 1130
Hpy8I GTNNAC 4 cut(s) 355, 716, 831, 1130
Hpy99I CGWCG 1 cut(s) 744
HpyAV CCTTC 4 cut(s) 20, 25, 1014, 1425
HpyCH4III ACNGT 4 cut(s) 365, 530, 1026, 1201
HpyCH4V TGCA 5 cut(s) 546, 725, 839, 912, 1633
HpyF10VI GCNNNNNNNGC 3 cut(s) 1324, 1630, 1639
HpyF3I CTNAG 7 cut(s) 516, 557, 567, 684, 1257, 1501, 1667
Hsp92II CATG 9 cut(s) 428, 1043, 1106, 1148, 1208, 1300, 1318, 1385, 1633
KflI GGGWCCC 1 cut(s) 1454
KpnI GGTACC 1 cut(s) 1030
KspAI GTTAAC 1 cut(s) 831
Kzo9I GATC 4 cut(s) 553, 1520, 1543, 1615
LguI GCTCTTC 1 cut(s) 769
LmnI GCTCC 4 cut(s) 12, 566, 1436, 1605
Lsp1109I GCAGC 3 cut(s) 144, 819, 1649
LweI GCATC 6 cut(s) 848, 871, 922, 988, 1364, 1642
MaeI CTAG 4 cut(s) 78, 395, 1302, 1392
MaeIII GTNAC 2 cut(s) 967, 1260
MalI GATC 4 cut(s) 555, 1522, 1545, 1617
MboI GATC 4 cut(s) 553, 1520, 1543, 1615
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 1240
MlyI GAGTC 5 cut(s) 14, 350, 931, 1220, 1438
MmeI TCCRAC 2 cut(s) 722, 1627
MroXI GAANNNNTTC 1 cut(s) 1429
MseI TTAA 4 cut(s) 389, 830, 920, 1678
MslI CAYNNNNRTG 2 cut(s) 1044, 1634
MspI CCGG 1 cut(s) 1319
MspR9I CCNGG 2 cut(s) 1310, 1451
Mva1269I GAATGC 2 cut(s) 498, 1540
MvaI CCWGG 2 cut(s) 1310, 1451
MwoI GCNNNNNNNGC 3 cut(s) 1324, 1630, 1639
NcoI CCATGG 1 cut(s) 1296
NdeII GATC 4 cut(s) 553, 1520, 1543, 1615
NheI GCTAGC 1 cut(s) 1301
NlaIII CATG 9 cut(s) 428, 1043, 1106, 1148, 1208, 1300, 1318, 1385, 1633
NlaIV GGNNCC 6 cut(s) 14, 963, 1028, 1455, 1456, 1567
NmuCI GTSAC 1 cut(s) 1260
NspI RCATGY 1 cut(s) 1385
PagI TCATGA 2 cut(s) 1039, 1144
PaqCI CACCTGC 1 cut(s) 1624
PceI AGGCCT 2 cut(s) 949, 1116
PciSI GCTCTTC 1 cut(s) 769
PctI GAATGC 2 cut(s) 498, 1540
PdmI GAANNNNTTC 1 cut(s) 1429
PfeI GAWTC 8 cut(s) 68, 323, 371, 428, 470, 763, 1497, 1671
PkrI GCNGC 3 cut(s) 134, 809, 1664
PleI GAGTC 5 cut(s) 13, 350, 931, 1220, 1438
PpsI GAGTC 5 cut(s) 13, 350, 931, 1220, 1438
PpuMI RGGWCCY 1 cut(s) 1454
Psp5II RGGWCCY 1 cut(s) 1454
Psp6I CCWGG 2 cut(s) 1308, 1449
PspFI CCCAGC 1 cut(s) 1439
PspGI CCWGG 2 cut(s) 1308, 1449
PspN4I GGNNCC 6 cut(s) 14, 963, 1028, 1455, 1456, 1567
PspPI GGNCC 2 cut(s) 1454, 1566
PspPPI RGGWCCY 1 cut(s) 1454
PstNI CAGNNNCTG 1 cut(s) 1229
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 4 cut(s) 124, 274, 1028, 1203
RsaNI GTAC 4 cut(s) 123, 273, 1027, 1202
RseI CAYNNNNRTG 2 cut(s) 1044, 1634
SapI GCTCTTC 1 cut(s) 769
SaqAI TTAA 4 cut(s) 389, 830, 920, 1678
SatI GCNGC 3 cut(s) 133, 808, 1663
Sau3AI GATC 4 cut(s) 553, 1520, 1543, 1615
Sau96I GGNCC 2 cut(s) 1454, 1566
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 5 cut(s) 14, 350, 931, 1220, 1438
ScrFI CCNGG 2 cut(s) 1310, 1451
SduI GDGCHC 1 cut(s) 1240
SfaNI GCATC 6 cut(s) 848, 871, 922, 988, 1364, 1642
SinI GGWCC 2 cut(s) 1454, 1566
SmiMI CAYNNNNRTG 2 cut(s) 1044, 1634
SmlI CTYRAG 1 cut(s) 753
SmoI CTYRAG 1 cut(s) 753
SseBI AGGCCT 2 cut(s) 949, 1116
SsiI CCGC 2 cut(s) 496, 522
SspI AATATT 1 cut(s) 1097
SspMI CTAG 4 cut(s) 78, 395, 1302, 1392
StuI AGGCCT 2 cut(s) 949, 1116
StyD4I CCNGG 2 cut(s) 1308, 1449
StyI CCWWGG 2 cut(s) 1296, 1516
TaaI ACNGT 4 cut(s) 365, 530, 1026, 1201
TaqI TCGA 2 cut(s) 476, 1575
TatI WGTACW 3 cut(s) 122, 272, 1201
TfiI GAWTC 8 cut(s) 68, 323, 371, 428, 470, 763, 1497, 1671
Tru1I TTAA 4 cut(s) 389, 830, 920, 1678
Tru9I TTAA 4 cut(s) 389, 830, 920, 1678
TscAI CASTG 4 cut(s) 70, 874, 1195, 1483
TseFI GTSAC 1 cut(s) 1260
TseI GCWGC 3 cut(s) 132, 807, 1662
Tsp45I GTSAC 1 cut(s) 1260
TspDTI ATGAA 7 cut(s) 60, 336, 453, 662, 1028, 1133, 1442
TspRI CASTG 4 cut(s) 70, 874, 1195, 1483
VpaK11BI GGWCC 2 cut(s) 1454, 1566
XagI CCTNNNNNAGG 2 cut(s) 954, 1419
XapI RAATTY 8 cut(s) 301, 434, 873, 1120, 1218, 1290, 1409, 1429
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 1 cut(s) 1385
XcmI CCANNNNNNNNNTGG 2 cut(s) 874, 1339
XmnI GAANNNNTTC 1 cut(s) 1429
XspI CTAG 4 cut(s) 78, 395, 1302, 1392
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.