RLG00000005044

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003696
Physical Location & Seq
Forward (+)
64575194 .. 64577725
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005044

Sequence Viewer

Length: 1524 bp
ATGGAGTCTTGGAGCTGTATTTCTGAAGGGAAGGGTTTTGTACCTGATGAAACAATTTCTCATACTGATTCACTTGCTAGAAATAGAAGTGCTTTGATGGGTTGGGATTTGAAAATCCCATGTACTTTTGAAAGTCAAGGTTTTGGGGAATTGGGTTTGGCAGAAATGTTGGGCAAACATCTACCAAGAAGTACATCAAGTATGGGTACCCTAAATCCATTTTTTGGAGAAGATGAATCCTCTTCAAAGCTTTCAAGCTCTATTGTTGAATCCAACAGCAGGGATTCTTCACTCTTTGATTTAAAACTAGATGCTTATACTTCTAAGTCATCAAAAAAAGCTTCGATTTTTTCTACATCCGAGTCATCTACACCTGCAAAGAGAATGAGGGTATCAGGAGTGTACTCCCCGACTGCTTATTGCCAGGTTTATGGCTGCAACAAGGACCTCAGCTCCTCTAAGGACTACCACAAGAGGCATAAAGTTTGTGAGGCTCACTCAAAGACCGCCAAAGTCATTGTCAAAGGCACAGAACAGAGGTTTTGTCAGCAATGTAGCAGGTTCCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGTCGTAAACGCCTTGCCGGACACAATGAGCGCCGGAGAAAGCCTCAAGTTCGTATTCATTCTGGAAGAGATGGGAGGTTGCTTCAGTCACATAGTGGCAGCGGTTTTCCGGGGACTATGTTCACAGCTGCATCTTTCGTCTGCCAAGATATACTCCCTAGTAGCATTTTAGATGCTGAGAATTACAGAGCAAGTGACTGCAGGCGTATAAAAGTGGAAGGTGGCACTCAGCATAGGCCTTTGTCAGGAGTGCCTGTTACAAATGGGCATCTGCATTTGAAACCGGTCTTCTCTTCTTATGACAATGGAAAACAATATCCCCCAGTTCATGTAAATGGAACTAATAATCTTCCTAGTGGAAGCATACTCGCTGAGACTGGTAGTCAGTATCCACATGAGTTGAGAAGCTTAAATTCTGGTTCATATTCTATTTATCATGAGGTTGCATTAGGAAGTGAAGACTTCAATGATCTCCACACAACAGCATCAACTGTGCAAGGATTATCGCGCATTCCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCTACAAGCCATTCTTCAGGAATTCCTATTGCTCGTCCCTCAGTAATGCCTGTCAGCCATACACATCACAACCTCAGACAAGTTTCTGATAAGCTTTCCTCACAGGCTTCCACAAGTGGGGTGTTGAATAAATTTCCTTCTTCGGGTCCCATGATGATATCTACTGGAAGTGATGCTAATAATTTTGGAGTCTCAAACGGGATTTTCCAAGGATCACAGTTTTTGAACCCCAAAGATCGTCTATCATGTGATGGTGGGACTACTATTGACCTGCTTCAACTTTCATCAGAGCTCCAACGAGTTGAGGATCAACGGCAATCCCTGCAGGTGAAGAAGGAAAATGACGCTTTCTGCTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

508

Amino Acids

55.29

Weight (kDa)

8.66

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 141 - 214 2.5e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 382, 1477
Acc36I ACCTGC 4 cut(s) 382, 549, 1440, 1477
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 2 cut(s) 224, 571
AccII CGCG 1 cut(s) 1108
AciI CCGC 2 cut(s) 507, 702
AclWI GGATC 2 cut(s) 1381, 1476
AcsI RAATTY 4 cut(s) 578, 1012, 1182, 1292
AcuI CTGAAG 3 cut(s) 45, 668, 1161
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 5 cut(s) 42, 124, 193, 208, 404
AfiI CCNNNNNNNGG 7 cut(s) 224, 279, 571, 845, 1121, 1278, 1304
AgeI ACCGGT 1 cut(s) 883
AhdI GACNNNNNGTC 1 cut(s) 981
AjnI CCWGG 1 cut(s) 423
Alw21I GWGCWC 2 cut(s) 1132, 1455
Alw26I GTCTC 2 cut(s) 968, 1357
AlwI GGATC 2 cut(s) 1381, 1476
AoxI GGCC 1 cut(s) 836
ApeKI GCWGC 5 cut(s) 435, 597, 699, 728, 1515
ApoI RAATTY 4 cut(s) 578, 1012, 1182, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AsiGI ACCGGT 1 cut(s) 883
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 597, 633, 1110
AspS9I GGNCC 2 cut(s) 445, 1307
AsuC2I CCSGG 1 cut(s) 711
AsuHPI GGTGA 1 cut(s) 1501
AvaII GGWCC 2 cut(s) 445, 1307
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 1455
BbsI GAAGAC 2 cut(s) 880, 1065
Bbv12I GWGCWC 2 cut(s) 1132, 1455
BbvCI CCTCAGC 1 cut(s) 449
BbvI GCAGC 5 cut(s) 422, 609, 711, 715, 1502
BccI CCATC 4 cut(s) 91, 581, 665, 1406
BceAI ACGGC 1 cut(s) 1490
BciT130I CCWGG 1 cut(s) 425
BciVI GTATCC 1 cut(s) 999
BcnI CCSGG 1 cut(s) 711
BcoDI GTCTC 2 cut(s) 968, 1357
BfaI CTAG 4 cut(s) 78, 308, 759, 954
BfmI CTRYAG 2 cut(s) 799, 1484
BfoI RGCGCY 1 cut(s) 634
BfuAI ACCTGC 4 cut(s) 382, 549, 1440, 1477
BfuI GTATCC 1 cut(s) 999
BisI GCNGC 5 cut(s) 436, 598, 700, 729, 1516
BlsI GCNGC 5 cut(s) 437, 599, 701, 730, 1517
Bme1390I CCNGG 2 cut(s) 425, 711
Bme18I GGWCC 2 cut(s) 445, 1307
BmeRI GACNNNNNGTC 1 cut(s) 981
BmgT120I GGNCC 2 cut(s) 445, 1307
BmiI GGNNCC 4 cut(s) 208, 563, 1308, 1309
BmrFI CCNGG 2 cut(s) 425, 711
BmrI ACTGGG 1 cut(s) 917
BmsI GCATC 6 cut(s) 301, 740, 763, 877, 1094, 1324
BmuI ACTGGG 1 cut(s) 917
BpiI GAAGAC 2 cut(s) 880, 1065
BplI GAGNNNNNCTC 4 cut(s) 482, 514, 628, 660
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 630
BpuMI CCSGG 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 710, 1369
BsaWI WCCGGW 2 cut(s) 883, 1121
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 840, 870
Bsc4I CCNNNNNNNGG 7 cut(s) 224, 279, 571, 845, 1121, 1278, 1304
Bse118I RCCGGY 1 cut(s) 883
Bse1I ACTGG 3 cut(s) 923, 982, 1330
Bse3DI GCAATG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 710, 1369
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 7 cut(s) 224, 279, 571, 845, 1121, 1278, 1304
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 6 cut(s) 463, 768, 842, 963, 1215, 1249
BseNI ACTGG 3 cut(s) 923, 982, 1330
BseRI GAGGAG 1 cut(s) 445
BseXI GCAGC 5 cut(s) 422, 609, 711, 715, 1502
Bsh1236I CGCG 1 cut(s) 1108
BshFI GGCC 1 cut(s) 838
BshNI GGYRCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 883
BsiHKAI GWGCWC 2 cut(s) 1132, 1455
BsiSI CCGG 5 cut(s) 618, 634, 710, 884, 1122
BslFI GGGAC 4 cut(s) 727, 1182, 1293, 1432
BslI CCNNNNNNNGG 7 cut(s) 224, 279, 571, 845, 1121, 1278, 1304
BsmAI GTCTC 2 cut(s) 968, 1357
BsmFI GGGAC 4 cut(s) 727, 1182, 1293, 1432
BsmI GAATGC 1 cut(s) 1110
BsnI GGCC 1 cut(s) 838
Bsp1286I GDGCHC 2 cut(s) 1132, 1455
Bsp143I GATC 4 cut(s) 1069, 1373, 1396, 1468
BspACI CCGC 2 cut(s) 507, 702
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 6 cut(s) 462, 769, 841, 964, 1214, 1248
BspFNI CGCG 1 cut(s) 1108
BspHI TCATGA 1 cut(s) 1036
BspLI GGNNCC 4 cut(s) 208, 563, 1308, 1309
BspMAI CTGCAG 2 cut(s) 803, 1488
BspMI ACCTGC 4 cut(s) 382, 549, 1440, 1477
BspPI GGATC 2 cut(s) 1381, 1476
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 883
BsrI ACTGG 3 cut(s) 923, 982, 1330
BssAI RCCGGY 1 cut(s) 883
BssECI CCNNGG 2 cut(s) 710, 1369
BssMI GATC 4 cut(s) 1069, 1373, 1396, 1468
BssT1I CCWWGG 1 cut(s) 1369
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 2 cut(s) 1093, 1380
Bst6I CTCTTC 4 cut(s) 247, 661, 898, 1143
BstAPI GCANNNNNTGC 1 cut(s) 1483
BstC8I GCNNGC 2 cut(s) 573, 803
BstDEI CTNAG 8 cut(s) 324, 449, 459, 777, 828, 972, 1201, 1235
BstENI CCTNNNNNAGG 1 cut(s) 843
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 1108
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 3 cut(s) 597, 633, 1110
BstKTI GATC 4 cut(s) 1072, 1376, 1399, 1471
BstMAI GTCTC 2 cut(s) 968, 1357
BstMBI GATC 4 cut(s) 1069, 1373, 1396, 1468
BstMWI GCNNNNNNNGC 1 cut(s) 1483
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 423, 709
BstSFI CTRYAG 2 cut(s) 799, 1484
BstUI CGCG 1 cut(s) 1108
BstV1I GCAGC 5 cut(s) 422, 609, 711, 715, 1502
BstV2I GAAGAC 2 cut(s) 880, 1065
BstXI CCANNNNNNTGG 1 cut(s) 431
BsuI GTATCC 1 cut(s) 999
BsuRI GGCC 1 cut(s) 838
BtsCI GGATG 1 cut(s) 356
BveI ACCTGC 4 cut(s) 382, 549, 1440, 1477
Cac8I GCNNGC 2 cut(s) 573, 803
CciI TCATGA 1 cut(s) 1036
CfoI GCGC 3 cut(s) 597, 633, 1110
Cfr10I RCCGGY 1 cut(s) 883
Cfr13I GGNCC 2 cut(s) 445, 1307
CseI GACGC 1 cut(s) 1514
Csp6I GTAC 5 cut(s) 41, 123, 192, 207, 403
CspAI ACCGGT 1 cut(s) 883
CspCI CAANNNNNGTGG 2 cut(s) 981, 1016
CviAII CATG 6 cut(s) 120, 929, 995, 1037, 1312, 1407
CviQI GTAC 5 cut(s) 41, 123, 192, 207, 403
DdeI CTNAG 8 cut(s) 324, 449, 459, 777, 828, 972, 1201, 1235
DpnI GATC 4 cut(s) 1071, 1375, 1398, 1470
DpnII GATC 4 cut(s) 1069, 1373, 1396, 1468
DraI TTTAAA 1 cut(s) 303
DraIII CACNNNGTG 1 cut(s) 695
DriI GACNNNNNGTC 1 cut(s) 981
Eam1104I CTCTTC 4 cut(s) 247, 661, 898, 1143
Eam1105I GACNNNNNGTC 1 cut(s) 981
EarI CTCTTC 4 cut(s) 247, 661, 898, 1143
Ecl136II GAGCTC 1 cut(s) 1453
Eco130I CCWWGG 1 cut(s) 1369
Eco147I AGGCCT 1 cut(s) 838
Eco24I GRGCYC 1 cut(s) 1455
Eco32I GATATC 1 cut(s) 1320
Eco47I GGWCC 2 cut(s) 445, 1307
Eco53kI GAGCTC 1 cut(s) 1453
Eco57I CTGAAG 3 cut(s) 45, 668, 1161
EcoICRI GAGCTC 1 cut(s) 1453
EcoNI CCTNNNNNAGG 1 cut(s) 843
EcoO109I RGGNCCY 2 cut(s) 445, 1307
EcoRI GAATTC 1 cut(s) 1182
EcoRII CCWGG 1 cut(s) 423
EcoRV GATATC 1 cut(s) 1320
EcoT14I CCWWGG 1 cut(s) 1369
EcoT38I GRGCYC 1 cut(s) 1455
ErhI CCWWGG 1 cut(s) 1369
FaeI CATG 6 cut(s) 123, 932, 998, 1040, 1315, 1410
FalI AAGNNNNNCTT 2 cut(s) 1159, 1191
FaqI GGGAC 4 cut(s) 727, 1182, 1293, 1432
FatI CATG 6 cut(s) 119, 928, 994, 1036, 1311, 1406
Fnu4HI GCNGC 5 cut(s) 436, 598, 700, 729, 1516
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 1455
Fsp4HI GCNGC 5 cut(s) 436, 598, 700, 729, 1516
FspBI CTAG 4 cut(s) 78, 308, 759, 954
GlaI GCGC 3 cut(s) 596, 632, 1109
GluI GCNGC 5 cut(s) 436, 598, 700, 729, 1516
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 1 cut(s) 838
HapII CCGG 5 cut(s) 618, 634, 710, 884, 1122
HgaI GACGC 1 cut(s) 1514
HhaI GCGC 3 cut(s) 597, 633, 1110
Hin1II CATG 6 cut(s) 123, 932, 998, 1040, 1315, 1410
Hin6I GCGC 3 cut(s) 595, 631, 1108
HinP1I GCGC 3 cut(s) 595, 631, 1108
HindIII AAGCTT 4 cut(s) 248, 339, 1006, 1253
HinfI GANTC 8 cut(s) 5, 68, 236, 269, 284, 362, 1118, 1350
HpaII CCGG 5 cut(s) 618, 634, 710, 884, 1122
HphI GGTGA 1 cut(s) 1501
Hpy166II GTNNAC 3 cut(s) 403, 608, 723
Hpy188I TCNGA 6 cut(s) 25, 361, 1238, 1249, 1450, 1523
Hpy188III TCNNGA 6 cut(s) 396, 663, 846, 1037, 1115, 1179
Hpy8I GTNNAC 3 cut(s) 403, 608, 723
HpyAV CCTTC 5 cut(s) 20, 25, 812, 1308, 1489
HpyCH4III ACNGT 2 cut(s) 1093, 1380
HpyCH4V TGCA 8 cut(s) 377, 438, 731, 801, 874, 1046, 1096, 1486
HpyF10VI GCNNNNNNNGC 1 cut(s) 1483
HpyF3I CTNAG 8 cut(s) 324, 449, 459, 777, 828, 972, 1201, 1235
Hsp92II CATG 6 cut(s) 123, 932, 998, 1040, 1315, 1410
HspAI GCGC 3 cut(s) 595, 631, 1108
KflI GGGWCCC 1 cut(s) 1307
KpnI GGTACC 1 cut(s) 210
Kzo9I GATC 4 cut(s) 1069, 1373, 1396, 1468
LmnI GCTCC 3 cut(s) 12, 458, 1458
Lsp1109I GCAGC 5 cut(s) 422, 609, 711, 715, 1502
LweI GCATC 6 cut(s) 301, 740, 763, 877, 1094, 1324
MaeI CTAG 4 cut(s) 78, 308, 759, 954
MaeIII GTNAC 3 cut(s) 687, 794, 856
MalI GATC 4 cut(s) 1071, 1375, 1398, 1470
MboI GATC 4 cut(s) 1069, 1373, 1396, 1468
MhlI GDGCHC 2 cut(s) 1132, 1455
MluCI AATT 8 cut(s) 54, 149, 578, 781, 1012, 1182, 1292, 1342
MlyI GAGTC 4 cut(s) 14, 371, 1112, 1359
MmeI TCCRAC 2 cut(s) 297, 1480
MseI TTAA 2 cut(s) 302, 1010
MslI CAYNNNNRTG 1 cut(s) 933
MspA1I CMGCKG 3 cut(s) 600, 702, 728
MspI CCGG 5 cut(s) 618, 634, 710, 884, 1122
MspR9I CCNGG 2 cut(s) 425, 711
Mva1269I GAATGC 1 cut(s) 1110
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 1108
MwoI GCNNNNNNNGC 1 cut(s) 1483
NciI CCSGG 1 cut(s) 711
NdeII GATC 4 cut(s) 1069, 1373, 1396, 1468
NlaIII CATG 6 cut(s) 123, 932, 998, 1040, 1315, 1410
NlaIV GGNNCC 4 cut(s) 208, 563, 1308, 1309
NmuCI GTSAC 2 cut(s) 687, 794
PagI TCATGA 1 cut(s) 1036
PaqCI CACCTGC 2 cut(s) 382, 1477
PceI AGGCCT 1 cut(s) 838
PctI GAATGC 1 cut(s) 1110
PfeI GAWTC 4 cut(s) 68, 236, 269, 284
PflMI CCANNNNNTGG 2 cut(s) 224, 571
PinAI ACCGGT 1 cut(s) 883
PkrI GCNGC 5 cut(s) 437, 599, 701, 730, 1517
PleI GAGTC 4 cut(s) 13, 370, 1112, 1358
PpsI GAGTC 4 cut(s) 13, 370, 1112, 1358
PpuMI RGGWCCY 2 cut(s) 445, 1307
Psp124BI GAGCTC 1 cut(s) 1455
Psp5II RGGWCCY 2 cut(s) 445, 1307
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 4 cut(s) 208, 563, 1308, 1309
PspPI GGNCC 2 cut(s) 445, 1307
PspPPI RGGWCCY 2 cut(s) 445, 1307
PstI CTGCAG 2 cut(s) 803, 1488
PvuII CAGCTG 2 cut(s) 600, 728
RsaI GTAC 5 cut(s) 42, 124, 193, 208, 404
RsaNI GTAC 5 cut(s) 41, 123, 192, 207, 403
RseI CAYNNNNRTG 1 cut(s) 933
SacI GAGCTC 1 cut(s) 1455
SaqAI TTAA 2 cut(s) 302, 1010
SatI GCNGC 5 cut(s) 436, 598, 700, 729, 1516
Sau3AI GATC 4 cut(s) 1069, 1373, 1396, 1468
Sau96I GGNCC 2 cut(s) 445, 1307
SbfI CCTGCAGG 1 cut(s) 1488
SchI GAGTC 4 cut(s) 14, 371, 1112, 1359
ScrFI CCNGG 2 cut(s) 425, 711
SdaI CCTGCAGG 1 cut(s) 1488
SduI GDGCHC 2 cut(s) 1132, 1455
SfaNI GCATC 6 cut(s) 301, 740, 763, 877, 1094, 1324
SfcI CTRYAG 2 cut(s) 799, 1484
SinI GGWCC 2 cut(s) 445, 1307
SmiMI CAYNNNNRTG 1 cut(s) 933
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
Sse8387I CCTGCAGG 1 cut(s) 1488
Sse9I AATT 8 cut(s) 54, 149, 578, 781, 1012, 1182, 1292, 1342
SseBI AGGCCT 1 cut(s) 838
SsiI CCGC 2 cut(s) 507, 702
SspMI CTAG 4 cut(s) 78, 308, 759, 954
SstI GAGCTC 1 cut(s) 1455
StuI AGGCCT 1 cut(s) 838
StyD4I CCNGG 2 cut(s) 423, 709
StyI CCWWGG 1 cut(s) 1369
TaaI ACNGT 2 cut(s) 1093, 1380
TaqI TCGA 1 cut(s) 344
TasI AATT 8 cut(s) 54, 149, 578, 781, 1012, 1182, 1292, 1342
TatI WGTACW 3 cut(s) 122, 191, 402
TfiI GAWTC 4 cut(s) 68, 236, 269, 284
Tru1I TTAA 2 cut(s) 302, 1010
Tru9I TTAA 2 cut(s) 302, 1010
TseFI GTSAC 2 cut(s) 687, 794
TseI GCWGC 5 cut(s) 435, 597, 699, 728, 1515
Tsp45I GTSAC 2 cut(s) 687, 794
TspDTI ATGAA 6 cut(s) 63, 249, 647, 917, 1011, 1434
Van91I CCANNNNNTGG 2 cut(s) 224, 571
VpaK11BI GGWCC 2 cut(s) 445, 1307
XagI CCTNNNNNAGG 1 cut(s) 843
XapI RAATTY 4 cut(s) 578, 1012, 1182, 1292
XspI CTAG 4 cut(s) 78, 308, 759, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.