Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003696

Physical Location & Seq

Genomic Coordinates Reverse (-)

4502550 .. 4503356

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTCACAGCTGCATCTTTCGTCTGCCAAGATATACTCCCTAGTAGCATTTTAGATGCTGAGAATTACAGAACAAGTGACTGCAGGCGTATAAAAGTGGAAGGTGGCACTCAGCAAAGGCCTTTGTCAGGAGTGCCTGTTACAAATGGGCATCTGCATTTGAAACCGGTATTCTCTTCTTATGACAATGGAAAACAATATCCCCCAGTTCATGTAAATGGAACTAATAATCTTCCTAGTGGAAGCATACTCGCTGAGACTGGTAGTCAGTATCCACATGAGTTGAGAAGCTTAAATTCTGGTTCATGTTCTATTTATCATGAGGTTGCATTAGGAAGTGAAGACTTCAATGATCTCCACACAACAGCATCAACCGTGCAAGGATTATCGCGCATTCCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCTACAAGCCATTCTTCAGGAATTCCTATTGCTCGTCCCTTGGTAATGCCTGTCAGCCATACACATTACAACCTCAGACAAGTTTCTGATAAGCTTTCCTCGCAGGCTTCCACAAGTGGGGTGTTGAATAAATTTCCTTCTTCGGGTCCCATGATTATATCTGCTGGAAGTGATGCTGATAATTTTGGAGTCTCAAATGGGATTTTCCAAGGATCACAGTTTTTGAACCCCAAAGATCGTCGATCATGTGATGGTGGGACTACTATTGACTTGCTTCAACTTTCATCAGAGCTCCAACGAGTTGAGGATCAACGGCAATCCCTGCAGGTGAAGAAGGAAAATGACGCTTTCTGCTGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

268

Amino Acids

28.82

Weight (kDa)

6.12

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520
malus_domestica	MD06G1204000.v1.1 MD14G1215300.v1.1
prunus_persica	Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1
pyrus_communis	pycom06g18230 pycom14g17820
rosa_chinensis	RchiOBHm_Chr7g0183471 RchiOBHm_Chr7g0183501
rosa_laevigata	RLG00000005044
rosa_multiflora	Rmu_co8381461.1_g000001 Rmu_sc0000951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00270430
rosa_rugosa	Rorug06G0458100 Rorug06G0458100
rosa_samantha	Rh7AG059100 Rh7BG059100 Rh7CG060800 Rh7DG058900 Rh7DG059500
rosa_wichuraiana	Rw7G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	760
Acc36I	ACCTGC	1 cut(s)	760
AccII	CGCG	1 cut(s)	391
AclWI	GGATC	2 cut(s)	664, 759
AcsI	RAATTY	3 cut(s)	295, 465, 575
AcuI	CTGAAG	1 cut(s)	444
AfiI	CCNNNNNNNGG	4 cut(s)	128, 404, 561, 587
AgeI	ACCGGT	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	163, 349, 571, 670, 722
AhdI	GACNNNNNGTC	1 cut(s)	264
AluBI	AGCT	4 cut(s)	11, 291, 538, 736
AluI	AGCT	4 cut(s)	11, 291, 538, 736
Alw21I	GWGCWC	2 cut(s)	415, 738
Alw26I	GTCTC	2 cut(s)	251, 640
AlwI	GGATC	2 cut(s)	664, 759
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	11, 798
ApoI	RAATTY	3 cut(s)	295, 465, 575
AsiGI	ACCGGT	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	415, 738
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	1 cut(s)	773
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	251, 640
BfaI	CTAG	2 cut(s)	42, 237
BfmI	CTRYAG	2 cut(s)	82, 767
BfuAI	ACCTGC	1 cut(s)	760
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	2 cut(s)	12, 799
BlsI	GCNGC	2 cut(s)	13, 800
Bme18I	GGWCC	1 cut(s)	590
BmeRI	GACNNNNNGTC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	591, 592
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	5 cut(s)	23, 46, 160, 377, 607
BmuI	ACTGGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	483, 652
BsaWI	WCCGGW	2 cut(s)	166, 404
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 404, 561, 587
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	2 cut(s)	206, 265
BseDI	CCNNGG	2 cut(s)	483, 652
BseLI	CCNNNNNNNGG	4 cut(s)	128, 404, 561, 587
BseMII	CTCAG	4 cut(s)	51, 125, 246, 532
BseNI	ACTGG	2 cut(s)	206, 265
BseXI	GCAGC	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	121
BshTI	ACCGGT	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	415, 738
BsiSI	CCGG	2 cut(s)	167, 405
BslFI	GGGAC	3 cut(s)	465, 576, 715
BslI	CCNNNNNNNGG	4 cut(s)	128, 404, 561, 587
BsmAI	GTCTC	2 cut(s)	251, 640
BsmFI	GGGAC	3 cut(s)	465, 576, 715
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	415, 738
Bsp143I	GATC	5 cut(s)	352, 656, 679, 686, 751
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	4 cut(s)	52, 124, 247, 531
BspFNI	CGCG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	591, 592
BspMAI	CTGCAG	2 cut(s)	86, 771
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	2 cut(s)	664, 759
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	206, 265
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	483, 652
BssMI	GATC	5 cut(s)	352, 656, 679, 686, 751
BssT1I	CCWWGG	2 cut(s)	483, 652
Bst4CI	ACNGT	2 cut(s)	376, 663
Bst6I	CTCTTC	2 cut(s)	181, 426
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstC8I	GCNNGC	2 cut(s)	86, 549
BstDEI	CTNAG	4 cut(s)	60, 111, 255, 518
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	5 cut(s)	355, 659, 682, 689, 754
BstMAI	GTCTC	2 cut(s)	251, 640
BstMBI	GATC	5 cut(s)	352, 656, 679, 686, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 766
BstSFI	CTRYAG	2 cut(s)	82, 767
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	785
BstV2I	GAAGAC	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	2 cut(s)	86, 549
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	1 cut(s)	797
CspAI	ACCGGT	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	6 cut(s)	212, 278, 306, 320, 595, 690
CviJI	RGCY	8 cut(s)	11, 121, 291, 453, 501, 538, 551, 736
CviKI_1	RGCY	8 cut(s)	11, 121, 291, 453, 501, 538, 551, 736
DdeI	CTNAG	4 cut(s)	60, 111, 255, 518
DpnI	GATC	5 cut(s)	354, 658, 681, 688, 753
DpnII	GATC	5 cut(s)	352, 656, 679, 686, 751
DriI	GACNNNNNGTC	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	181, 426
Eam1105I	GACNNNNNGTC	1 cut(s)	264
EarI	CTCTTC	2 cut(s)	181, 426
Ecl136II	GAGCTC	1 cut(s)	736
Eco130I	CCWWGG	2 cut(s)	483, 652
Eco147I	AGGCCT	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	738
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	1 cut(s)	736
Eco57I	CTGAAG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	736
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	483, 652
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	483, 652
FaeI	CATG	6 cut(s)	215, 281, 309, 323, 598, 693
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FaqI	GGGAC	3 cut(s)	465, 576, 715
FatI	CATG	6 cut(s)	211, 277, 305, 319, 594, 689
Fnu4HI	GCNGC	2 cut(s)	12, 799
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	2 cut(s)	12, 799
FspBI	CTAG	2 cut(s)	42, 237
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	2 cut(s)	12, 799
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	167, 405
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	215, 281, 309, 323, 598, 693
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	289, 536
HinfI	GANTC	2 cut(s)	401, 633
HpaII	CCGG	2 cut(s)	167, 405
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	521, 532, 733, 806
Hpy188III	TCNNGA	4 cut(s)	129, 320, 398, 462
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	3 cut(s)	95, 591, 772
HpyCH4III	ACNGT	2 cut(s)	376, 663
HpyCH4V	TGCA	6 cut(s)	14, 84, 157, 329, 379, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 766
HpyF3I	CTNAG	4 cut(s)	60, 111, 255, 518
Hsp92II	CATG	6 cut(s)	215, 281, 309, 323, 598, 693
HspAI	GCGC	1 cut(s)	391
KflI	GGGWCCC	1 cut(s)	590
Kzo9I	GATC	5 cut(s)	352, 656, 679, 686, 751
LmnI	GCTCC	1 cut(s)	741
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	5 cut(s)	23, 46, 160, 377, 607
MaeI	CTAG	2 cut(s)	42, 237
MaeIII	GTNAC	2 cut(s)	77, 139
MalI	GATC	5 cut(s)	354, 658, 681, 688, 753
MboI	GATC	5 cut(s)	352, 656, 679, 686, 751
MboII	GAAGA	7 cut(s)	168, 224, 353, 413, 450, 576, 787
MhlI	GDGCHC	2 cut(s)	415, 738
MluCI	AATT	5 cut(s)	64, 295, 465, 575, 625
MlyI	GAGTC	2 cut(s)	395, 642
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	4 cut(s)	316, 527, 553, 742
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	167, 405
Mva1269I	GAATGC	1 cut(s)	393
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	544, 766
NdeII	GATC	5 cut(s)	352, 656, 679, 686, 751
NlaIII	CATG	6 cut(s)	215, 281, 309, 323, 598, 693
NlaIV	GGNNCC	2 cut(s)	591, 592
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	760
PceI	AGGCCT	1 cut(s)	121
PctI	GAATGC	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	13, 800
PleI	GAGTC	2 cut(s)	395, 641
PpsI	GAGTC	2 cut(s)	395, 641
PpuMI	RGGWCCY	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	590
PspN4I	GGNNCC	2 cut(s)	591, 592
PspPI	GGNCC	1 cut(s)	590
PspPPI	RGGWCCY	1 cut(s)	590
PstI	CTGCAG	2 cut(s)	86, 771
PvuII	CAGCTG	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	12, 799
Sau3AI	GATC	5 cut(s)	352, 656, 679, 686, 751
Sau96I	GGNCC	1 cut(s)	590
SbfI	CCTGCAGG	1 cut(s)	771
SchI	GAGTC	2 cut(s)	395, 642
SdaI	CCTGCAGG	1 cut(s)	771
SduI	GDGCHC	2 cut(s)	415, 738
SetI	ASST	8 cut(s)	13, 106, 293, 327, 519, 540, 738, 774
SfaNI	GCATC	5 cut(s)	23, 46, 160, 377, 607
SfcI	CTRYAG	2 cut(s)	82, 767
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse8387I	CCTGCAGG	1 cut(s)	771
Sse9I	AATT	5 cut(s)	64, 295, 465, 575, 625
SseBI	AGGCCT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	42, 237
SstI	GAGCTC	1 cut(s)	738
StuI	AGGCCT	1 cut(s)	121
StyI	CCWWGG	2 cut(s)	483, 652
TaaI	ACNGT	2 cut(s)	376, 663
TaqI	TCGA	1 cut(s)	685
TasI	AATT	5 cut(s)	64, 295, 465, 575, 625
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	11, 798
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	200, 294, 717
VpaK11BI	GGWCC	1 cut(s)	590
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	3 cut(s)	295, 465, 575
XspI	CTAG	2 cut(s)	42, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.