pycom06g18230

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003696
Physical Location & Seq
Reverse (-)
22039445 .. 22041914
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18230.1

Sequence Viewer

Length: 1572 bp
ATGGAATCTTGGAGCTGTATTTCTGAAGGGAAAGGGTTTGTTGTATCAGATGAAACAATTTCACATACTGATTCACTTTCTAGAAGTAGAAATGGTTTGATGGGTTGGGAACTGAAAATCCCATGTACTTTCATGGAAAGTCAAGGTTTTGGGGAGTTGGGTAACTTGGGTTTGCCAGAAATGGTGGGCAAACATTTGCAGAATGATTCAATTAGAGATGTAGTGAGCACAAGTATTTCTACCCCGAATTTATTTTCGGGTGAAGCCGAATCCTCTTCGAGGATTTCGAGCTCCATTGTGGACTCCAGCAGTAGGGATTCTTCACTCATTGATTTAAAACTAGGGAGATTGGCTGATCACAAAGGTGTTCATAGCTCTAAATTGTCTAAAGGAACTCCCATGTTGTCCTCATCTGAATCATCCACACCTACAAAGAGAATGCGTGTTTCGGGTGTGTATTCTCAGCCTGCCTACTGCCAGGTTTATGGTTGCAGCAAGGATCTTAGCTCCTGTAAGGACTACCACAAGAGGCATAAAGTCTGCGAGGTTCACTCGAAGACTGCGAAAGTTATTATCAATGGCATAGAACAAAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGTTGGGTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAGCGCCTTGCAGGACACAACGAGCGGCGGAGAAAGCCTCAGATTGGGAGTCATTCTGGAAGAGCTGAGAGGTTCCCTCAGTCATTTGATGGTGGCAGATTTGAAGGGAATATGTTAACTACTGCATCTTTTATCTGCCAAGAGATACTCCCTAGTGGCAATTTGAATCCTGAGAAATATGGAACAAGTGACTGGTGCAGGCGCCTAAAAGTTGAAGGCGGGACTCATTATAGGCCTTTTTTGGGGATGCCTGTTGCAAACGGGCATCTGCATTCGAAACCTGTCCTCCCTTCTTACGATATTGGCAAACAGTATCCCCCATTTCATGAAAACAGAACTAATCCTCAAAATGCAAGCATATTTGGTCAGAATGGTAGTCAATATCCACAAGATGCGAGAGGCCTAAGTTCCGGTTCACATTCTATTTTTCATGAGACCGCATTAGGAAGTCAAAACTTAAATGTTTTCGACACAGCTTCAGCAGTTCAAGGATTATTGGGAATCTCAGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAACCACAGAACTCTTCAAGCTATTTGTCAGGAATTCCTATTGCGCGTCCCTTAGTCATACCAGCCAGCCATAACTTCCCTTCTTCAGGAATAAATTCTGGAGCTGGCAATCACCTGAGTCCCATACCGCTATCTAATGGTTGTGATGATACTGACGATTTTGGAATCTCAGATGGGATTTTCCAAGGATCAGGTTTTGTGAACACAAAAGATCGTCTACCCTCTCAAGATGGAGCCACTATCAACTTGCTTCAACTGTCATCGCATCTCCAACGAGTAGAGGATCAACGGCAATCCATGCTGGTGAAGCAGGAAAATGATGCTTTCTGCTTTACTGAGAATCACTTAAAAAGTGATCTGCAAATAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

524

Amino Acids

57.11

Weight (kDa)

7.92

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 159 - 232 1.4e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 861
AccBSI CCGCTC 1 cut(s) 685
AccI GTMKAC 1 cut(s) 1417
AccII CGCG 1 cut(s) 1246
AciI CCGC 5 cut(s) 685, 688, 879, 1098, 1328
AclWI GGATC 3 cut(s) 507, 1396, 1491
AcsI RAATTY 4 cut(s) 247, 632, 1233, 1294
AcuI CTGAAG 3 cut(s) 45, 1122, 1269
AcyI GRCGYC 1 cut(s) 862
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 5 cut(s) 279, 312, 704, 902, 1286
AgsI TTSAA 7 cut(s) 210, 764, 826, 875, 1148, 1218, 1454
AjnI CCWGG 1 cut(s) 477
AleI CACNNNNGTG 1 cut(s) 363
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
AluBI AGCT 9 cut(s) 15, 291, 375, 507, 654, 725, 1136, 1221, 1304
AluI AGCT 9 cut(s) 15, 291, 375, 507, 654, 725, 1136, 1221, 1304
Alw21I GWGCWC 3 cut(s) 230, 293, 1183
Alw26I GTCTC 1 cut(s) 1088
AlwI GGATC 3 cut(s) 507, 1396, 1491
AlwNI CAGNNNCTG 1 cut(s) 1172
AoxI GGCC 2 cut(s) 893, 1060
ApeKI GCWGC 1 cut(s) 492
ApoI RAATTY 4 cut(s) 247, 632, 1233, 1294
ArsI GACNNNNNNTTYG 2 cut(s) 583, 615
Asp700I GAANNNNTTC 1 cut(s) 1294
AspLEI GCGC 3 cut(s) 666, 864, 1246
AsuHPI GGTGA 4 cut(s) 272, 641, 1304, 1516
AsuII TTCGAA 1 cut(s) 935
BanI GGYRCC 1 cut(s) 861
BanII GRGCYC 1 cut(s) 293
BarI GAAGNNNNNNTAC 2 cut(s) 304, 336
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 3 cut(s) 230, 293, 1183
BbvI GCAGC 1 cut(s) 504
BccI CCATC 5 cut(s) 94, 635, 743, 1367, 1424
BceAI ACGGC 1 cut(s) 1505
BciT130I CCWGG 1 cut(s) 479
BciVI GTATCC 1 cut(s) 984
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 1088
BfaI CTAG 3 cut(s) 81, 341, 813
BfoI RGCGCY 2 cut(s) 667, 865
BfuAI ACCTGC 1 cut(s) 603
BfuI GTATCC 1 cut(s) 984
BisI GCNGC 2 cut(s) 493, 686
BlsI GCNGC 2 cut(s) 494, 687
Bme1390I CCNGG 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 734, 863, 1435
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 6 cut(s) 794, 897, 934, 1042, 1474, 1510
BpiI GAAGAC 1 cut(s) 563
BplI GAGNNNNNCTC 6 cut(s) 536, 568, 682, 714, 721, 753
BpmI CTGGAG 2 cut(s) 289, 1320
Bpu14I TTCGAA 1 cut(s) 935
BpuEI CTTGAG 1 cut(s) 1410
BsaHI GRCGYC 1 cut(s) 862
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 1 cut(s) 1384
BsaWI WCCGGW 1 cut(s) 1070
BsaXI ACNNNNNCTCC 2 cut(s) 930, 960
Bsc4I CCNNNNNNNGG 5 cut(s) 279, 312, 704, 902, 1286
Bse1I ACTGG 1 cut(s) 857
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 1 cut(s) 1384
BseGI GGATG 2 cut(s) 419, 912
BseLI CCNNNNNNNGG 5 cut(s) 279, 312, 704, 902, 1286
BseMII CTCAG 9 cut(s) 476, 713, 717, 752, 822, 1179, 1307, 1383, 1527
BseNI ACTGG 1 cut(s) 857
BseXI GCAGC 1 cut(s) 504
BsgI GTGCAG 1 cut(s) 877
Bsh1236I CGCG 1 cut(s) 1246
BshFI GGCC 2 cut(s) 895, 1062
BshNI GGYRCC 1 cut(s) 861
BsiHKAI GWGCWC 3 cut(s) 230, 293, 1183
BsiSI CCGG 1 cut(s) 1071
BslFI GGGAC 3 cut(s) 895, 1233, 1305
BslI CCNNNNNNNGG 5 cut(s) 279, 312, 704, 902, 1286
BsmAI GTCTC 1 cut(s) 1088
BsmFI GGGAC 3 cut(s) 895, 1233, 1305
BsmI GAATGC 2 cut(s) 444, 931
BsnI GGCC 2 cut(s) 895, 1062
Bso31I GGTCTC 1 cut(s) 1088
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 3 cut(s) 230, 293, 1183
Bsp143I GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
BspACI CCGC 5 cut(s) 685, 688, 879, 1098, 1328
BspANI GGCC 2 cut(s) 895, 1062
BspCNI CTCAG 9 cut(s) 475, 712, 718, 751, 823, 1178, 1308, 1382, 1528
BspFNI CGCG 1 cut(s) 1246
BspHI TCATGA 2 cut(s) 985, 1090
BspLI GGNNCC 3 cut(s) 734, 863, 1435
BspMI ACCTGC 1 cut(s) 603
BspPI GGATC 3 cut(s) 507, 1396, 1491
BspQI GCTCTTC 1 cut(s) 715
BspT104I TTCGAA 1 cut(s) 935
BspT107I GGYRCC 1 cut(s) 861
BspTNI GGTCTC 1 cut(s) 1088
BsrBI CCGCTC 1 cut(s) 685
BsrI ACTGG 1 cut(s) 857
BssECI CCNNGG 1 cut(s) 1384
BssMI GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
BssNI GRCGYC 1 cut(s) 862
BssT1I CCWWGG 1 cut(s) 1384
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 972, 1458
Bst6I CTCTTC 4 cut(s) 280, 715, 1194, 1219
BstACI GRCGYC 1 cut(s) 862
BstAPI GCANNNNNTGC 1 cut(s) 1498
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 5 cut(s) 468, 860, 1015, 1267, 1306
BstENI CCTNNNNNAGG 2 cut(s) 277, 1284
BstF5I GGATG 2 cut(s) 419, 912
BstFNI CGCG 1 cut(s) 1246
BstH2I RGCGCY 2 cut(s) 667, 865
BstHHI GCGC 3 cut(s) 666, 864, 1246
BstKTI GATC 6 cut(s) 358, 502, 1391, 1414, 1486, 1558
BstMAI GTCTC 1 cut(s) 1088
BstMBI GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
BstMWI GCNNNNNNNGC 3 cut(s) 694, 1498, 1507
BstNI CCWGG 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 477
BstUI CGCG 1 cut(s) 1246
BstV1I GCAGC 1 cut(s) 504
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 1 cut(s) 499
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 1 cut(s) 499
BsuI GTATCC 1 cut(s) 984
BsuRI GGCC 2 cut(s) 895, 1062
BtgZI GCGATG 1 cut(s) 1446
BtsCI GGATG 2 cut(s) 419, 912
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 5 cut(s) 468, 860, 1015, 1267, 1306
CaiI CAGNNNCTG 1 cut(s) 1172
CciI TCATGA 2 cut(s) 985, 1090
CfoI GCGC 3 cut(s) 666, 864, 1246
CseI GACGC 1 cut(s) 1235
Csp6I GTAC 1 cut(s) 126
CviAII CATG 6 cut(s) 123, 133, 400, 986, 1091, 1498
CviQI GTAC 1 cut(s) 126
DinI GGCGCC 1 cut(s) 863
DpnI GATC 6 cut(s) 357, 501, 1390, 1413, 1485, 1557
DpnII GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
DraI TTTAAA 1 cut(s) 336
Eam1104I CTCTTC 4 cut(s) 280, 715, 1194, 1219
EarI CTCTTC 4 cut(s) 280, 715, 1194, 1219
EciI GGCGGA 1 cut(s) 703
Ecl136II GAGCTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 1384
Eco147I AGGCCT 2 cut(s) 895, 1062
Eco24I GRGCYC 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 1088
Eco53kI GAGCTC 1 cut(s) 291
Eco57I CTGAAG 3 cut(s) 45, 1122, 1269
EcoICRI GAGCTC 1 cut(s) 291
EcoNI CCTNNNNNAGG 2 cut(s) 277, 1284
EcoRI GAATTC 1 cut(s) 1233
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 1384
EcoT38I GRGCYC 1 cut(s) 293
EgeI GGCGCC 1 cut(s) 863
EheI GGCGCC 1 cut(s) 863
ErhI CCWWGG 1 cut(s) 1384
FaeI CATG 6 cut(s) 126, 136, 403, 989, 1094, 1501
FaqI GGGAC 3 cut(s) 895, 1233, 1305
FatI CATG 6 cut(s) 122, 132, 399, 985, 1090, 1497
FauI CCCGC 1 cut(s) 872
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 1417
Fnu4HI GCNGC 2 cut(s) 493, 686
FokI GGATG 2 cut(s) 406, 919
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 493, 686
FspBI CTAG 3 cut(s) 81, 341, 813
GlaI GCGC 3 cut(s) 665, 863, 1245
GluI GCNGC 2 cut(s) 493, 686
GsuI CTGGAG 2 cut(s) 289, 1320
HaeII RGCGCY 2 cut(s) 667, 865
HaeIII GGCC 2 cut(s) 895, 1062
HapII CCGG 1 cut(s) 1071
HgaI GACGC 1 cut(s) 1235
HhaI GCGC 3 cut(s) 666, 864, 1246
Hin1I GRCGYC 1 cut(s) 862
Hin1II CATG 6 cut(s) 126, 136, 403, 989, 1094, 1501
Hin6I GCGC 3 cut(s) 664, 862, 1244
HinP1I GCGC 3 cut(s) 664, 862, 1244
HincII GTYRAC 2 cut(s) 602, 777
HindII GTYRAC 2 cut(s) 602, 777
HpaI GTTAAC 1 cut(s) 777
HpaII CCGG 1 cut(s) 1071
HphI GGTGA 4 cut(s) 272, 641, 1304, 1516
Hpy166II GTNNAC 7 cut(s) 301, 550, 602, 777, 1076, 1402, 1418
Hpy188I TCNGA 7 cut(s) 25, 49, 415, 702, 1029, 1168, 1372
Hpy188III TCNNGA 9 cut(s) 81, 717, 830, 986, 1091, 1230, 1287, 1299, 1427
Hpy8I GTNNAC 7 cut(s) 301, 550, 602, 777, 1076, 1402, 1418
HpyAV CCTTC 5 cut(s) 20, 758, 869, 960, 1290
HpyCH4III ACNGT 2 cut(s) 972, 1458
HpyCH4V TGCA 9 cut(s) 199, 492, 671, 785, 858, 917, 931, 1013, 1561
HpyF10VI GCNNNNNNNGC 3 cut(s) 694, 1498, 1507
Hsp92I GRCGYC 1 cut(s) 862
Hsp92II CATG 6 cut(s) 126, 136, 403, 989, 1094, 1501
HspAI GCGC 3 cut(s) 664, 862, 1244
KasI GGCGCC 1 cut(s) 861
Ksp22I TGATCA 1 cut(s) 355
KspAI GTTAAC 1 cut(s) 777
Kzo9I GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
LguI GCTCTTC 1 cut(s) 715
LmnI GCTCC 5 cut(s) 12, 296, 512, 1301, 1433
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 6 cut(s) 794, 897, 934, 1042, 1474, 1510
MaeI CTAG 3 cut(s) 81, 341, 813
MaeIII GTNAC 2 cut(s) 161, 848
MalI GATC 6 cut(s) 357, 501, 1390, 1413, 1485, 1557
MbiI CCGCTC 1 cut(s) 685
MboI GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
MboII GAAGA 7 cut(s) 267, 312, 568, 732, 1181, 1206, 1275
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 3 cut(s) 230, 293, 1183
MluCI AATT 8 cut(s) 57, 210, 247, 380, 632, 820, 1233, 1294
Mly113I GGCGCC 1 cut(s) 862
MlyI GAGTC 5 cut(s) 296, 718, 877, 1163, 1327
MmeI TCCRAC 1 cut(s) 1495
MroXI GAANNNNTTC 1 cut(s) 1294
MseI TTAA 4 cut(s) 335, 776, 1118, 1547
MslI CAYNNNNRTG 2 cut(s) 363, 1502
MspI CCGG 1 cut(s) 1071
MspR9I CCNGG 1 cut(s) 479
Mva1269I GAATGC 2 cut(s) 444, 931
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 1246
MwoI GCNNNNNNNGC 3 cut(s) 694, 1498, 1507
NarI GGCGCC 1 cut(s) 862
NdeII GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
NlaIII CATG 6 cut(s) 126, 136, 403, 989, 1094, 1501
NlaIV GGNNCC 3 cut(s) 734, 863, 1435
NmuCI GTSAC 1 cut(s) 848
NspV TTCGAA 1 cut(s) 935
OliI CACNNNNGTG 1 cut(s) 363
PagI TCATGA 2 cut(s) 985, 1090
PceI AGGCCT 2 cut(s) 895, 1062
PciSI GCTCTTC 1 cut(s) 715
PcsI WCGNNNNNNNCGW 2 cut(s) 284, 560
PctI GAATGC 2 cut(s) 444, 931
PdmI GAANNNNTTC 1 cut(s) 1294
PkrI GCNGC 2 cut(s) 494, 687
PleI GAGTC 5 cut(s) 296, 717, 877, 1163, 1326
PluTI GGCGCC 1 cut(s) 865
PpsI GAGTC 5 cut(s) 296, 717, 877, 1163, 1326
Psp124BI GAGCTC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 3 cut(s) 734, 863, 1435
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 2 cut(s) 363, 1502
SacI GAGCTC 1 cut(s) 293
SapI GCTCTTC 1 cut(s) 715
SaqAI TTAA 4 cut(s) 335, 776, 1118, 1547
SatI GCNGC 2 cut(s) 493, 686
Sau3AI GATC 6 cut(s) 355, 499, 1388, 1411, 1483, 1555
SchI GAGTC 5 cut(s) 296, 718, 877, 1163, 1327
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 3 cut(s) 230, 293, 1183
SfaNI GCATC 6 cut(s) 794, 897, 934, 1042, 1474, 1510
SfoI GGCGCC 1 cut(s) 863
SfuI TTCGAA 1 cut(s) 935
SmiMI CAYNNNNRTG 2 cut(s) 363, 1502
SmlI CTYRAG 1 cut(s) 1425
SmoI CTYRAG 1 cut(s) 1425
Sse9I AATT 8 cut(s) 57, 210, 247, 380, 632, 820, 1233, 1294
SseBI AGGCCT 2 cut(s) 895, 1062
SsiI CCGC 5 cut(s) 685, 688, 879, 1098, 1328
SspDI GGCGCC 1 cut(s) 861
SspMI CTAG 3 cut(s) 81, 341, 813
SstI GAGCTC 1 cut(s) 293
StuI AGGCCT 2 cut(s) 895, 1062
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 1384
TaaI ACNGT 2 cut(s) 972, 1458
TaqI TCGA 5 cut(s) 278, 287, 554, 935, 1128
TasI AATT 8 cut(s) 57, 210, 247, 380, 632, 820, 1233, 1294
TatI WGTACW 1 cut(s) 125
TauI GCSGC 1 cut(s) 688
Tru1I TTAA 4 cut(s) 335, 776, 1118, 1547
Tru9I TTAA 4 cut(s) 335, 776, 1118, 1547
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 848
TspDTI ATGAA 7 cut(s) 66, 121, 359, 608, 974, 1002, 1079
XagI CCTNNNNNAGG 2 cut(s) 277, 1284
XapI RAATTY 4 cut(s) 247, 632, 1233, 1294
XbaI TCTAGA 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 1417
XmnI GAANNNNTTC 1 cut(s) 1294
XspI CTAG 3 cut(s) 81, 341, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.