Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8381461.1

Orthogroup ID

OG0003696

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1111

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8381461.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 697 bp

atggagtcttggagctgtatctctgaagggaagggttttgtacctgatgaaacaatttctcatactgattcacttgctagaaatagaagtgctttgatgggttgggatttgaaaatcccatgtacttttgaaagtcaaggttttggggaattgggtttggcagaaatgttgggcaaacatctaccaagaagtacaacaagtatgggtaccctaaatccattttttggagaagatgaatccacttcaaagctttcaagctctattgttgaatccaacagcagggattcttcactctttgatttaaaactagatgcttatacttctaagtcatcaaaaaaagcttcgattttttccacatccgagtcatctacacctgcaaagagaatgagggtatcaggagtgtactccccgactgcttattgccaggtttatggctgcaacaaggacctcagctcctctaaggactaccacaagaggcataaagtttgtgaggctcactcgaagaccgccaaagtcatcgtcaaaggcatagaacagaggttttgtcagcaatgtagcaggttccatttgctggctgaatttgatgatggtaagcgcagctgtcgtaaacgccttgccggacacaatgagcgccggagaaagcctcaagttcgtattcattctggaagagatgggaggttgcttcagtcatatagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

9.34

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520
malus_domestica	MD06G1204000.v1.1 MD14G1215300.v1.1
prunus_persica	Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1
pyrus_communis	pycom06g18230 pycom14g17820
rosa_chinensis	RchiOBHm_Chr7g0183471 RchiOBHm_Chr7g0183501
rosa_laevigata	RLG00000005044
rosa_multiflora	Rmu_co8381461.1_g000001 Rmu_sc0000951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00270430
rosa_rugosa	Rorug06G0458100 Rorug06G0458100
rosa_samantha	Rh7AG059100 Rh7BG059100 Rh7CG060800 Rh7DG058900 Rh7DG059500
rosa_wichuraiana	Rw7G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	382
Acc36I	ACCTGC	2 cut(s)	382, 549
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	2 cut(s)	224, 571
AciI	CCGC	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	2 cut(s)	45, 668
AfaI	GTAC	5 cut(s)	42, 124, 193, 208, 404
AfiI	CCNNNNNNNGG	3 cut(s)	224, 279, 571
AgsI	TTSAA	5 cut(s)	112, 131, 246, 255, 269
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	6 cut(s)	15, 250, 258, 341, 453, 600
AluI	AGCT	6 cut(s)	15, 250, 258, 341, 453, 600
ApeKI	GCWGC	2 cut(s)	435, 597
ApoI	RAATTY	1 cut(s)	578
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
Asp718I	GGTACC	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	597, 633
AspS9I	GGNCC	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	422, 609
BccI	CCATC	3 cut(s)	91, 581, 665
BciT130I	CCWGG	1 cut(s)	425
BfaI	CTAG	2 cut(s)	78, 308
BfoI	RGCGCY	1 cut(s)	634
BfuAI	ACCTGC	2 cut(s)	382, 549
BisI	GCNGC	2 cut(s)	436, 598
BlsI	GCNGC	2 cut(s)	437, 599
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	208, 563
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	509
BplI	GAGNNNNNCTC	4 cut(s)	482, 514, 628, 660
Bpu10I	CCTNAGC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 279, 571
Bse3DI	GCAATG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	3 cut(s)	224, 279, 571
BseMI	GCAATG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	422, 609
BshNI	GGYRCC	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	618, 634
BslI	CCNNNNNNNGG	3 cut(s)	224, 279, 571
BspACI	CCGC	1 cut(s)	507
BspCNI	CTCAG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	208, 563
BspMI	ACCTGC	2 cut(s)	382, 549
BspT107I	GGYRCC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	661
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	3 cut(s)	324, 449, 459
BstF5I	GGATG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	2 cut(s)	597, 633
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	422, 609
BstV2I	GAAGAC	1 cut(s)	509
BstXI	CCANNNNNNTGG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	356
BveI	ACCTGC	2 cut(s)	382, 549
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	2 cut(s)	597, 633
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	5 cut(s)	41, 123, 192, 207, 403
CviAII	CATG	1 cut(s)	120
CviQI	GTAC	5 cut(s)	41, 123, 192, 207, 403
DdeI	CTNAG	3 cut(s)	324, 449, 459
DraI	TTTAAA	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	45, 668
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	123
FaiI	YATR	9 cut(s)	63, 121, 203, 318, 432, 480, 530, 691, 693
FatI	CATG	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	436, 598
FokI	GGATG	1 cut(s)	343
Fsp4HI	GCNGC	2 cut(s)	436, 598
FspBI	CTAG	2 cut(s)	78, 308
GlaI	GCGC	2 cut(s)	596, 632
GluI	GCNGC	2 cut(s)	436, 598
HaeII	RGCGCY	1 cut(s)	634
HapII	CCGG	2 cut(s)	618, 634
HhaI	GCGC	2 cut(s)	597, 633
Hin1II	CATG	1 cut(s)	123
Hin6I	GCGC	2 cut(s)	595, 631
HinP1I	GCGC	2 cut(s)	595, 631
HindIII	AAGCTT	2 cut(s)	248, 339
HinfI	GANTC	6 cut(s)	5, 68, 236, 269, 284, 362
HpaII	CCGG	2 cut(s)	618, 634
Hpy166II	GTNNAC	2 cut(s)	403, 608
Hpy188I	TCNGA	2 cut(s)	25, 361
Hpy188III	TCNNGA	2 cut(s)	396, 663
Hpy8I	GTNNAC	2 cut(s)	403, 608
HpyAV	CCTTC	2 cut(s)	20, 25
HpyCH4V	TGCA	2 cut(s)	377, 438
HpyF3I	CTNAG	3 cut(s)	324, 449, 459
Hsp92II	CATG	1 cut(s)	123
HspAI	GCGC	2 cut(s)	595, 631
KpnI	GGTACC	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	12, 458
Lsp1109I	GCAGC	2 cut(s)	422, 609
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	78, 308
MboII	GAAGA	4 cut(s)	242, 279, 514, 678
MluCI	AATT	3 cut(s)	54, 149, 578
MlyI	GAGTC	2 cut(s)	14, 371
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	381, 458, 466, 468, 484, 531, 654, 669
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	600
MspI	CCGG	2 cut(s)	618, 634
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
NlaIII	CATG	1 cut(s)	123
NlaIV	GGNNCC	2 cut(s)	208, 563
PaqCI	CACCTGC	1 cut(s)	382
PfeI	GAWTC	4 cut(s)	68, 236, 269, 284
PflMI	CCANNNNNTGG	2 cut(s)	224, 571
PkrI	GCNGC	2 cut(s)	437, 599
PleI	GAGTC	2 cut(s)	13, 370
PpsI	GAGTC	2 cut(s)	13, 370
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	208, 563
PspPI	GGNCC	1 cut(s)	445
PspPPI	RGGWCCY	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	600
RsaI	GTAC	5 cut(s)	42, 124, 193, 208, 404
RsaNI	GTAC	5 cut(s)	41, 123, 192, 207, 403
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	436, 598
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	2 cut(s)	14, 371
ScrFI	CCNGG	1 cut(s)	425
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
Sse9I	AATT	3 cut(s)	54, 149, 578
SsiI	CCGC	1 cut(s)	507
SspMI	CTAG	2 cut(s)	78, 308
StyD4I	CCNGG	1 cut(s)	423
TaqI	TCGA	2 cut(s)	344, 500
TasI	AATT	3 cut(s)	54, 149, 578
TatI	WGTACW	3 cut(s)	122, 191, 402
TfiI	GAWTC	4 cut(s)	68, 236, 269, 284
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	2 cut(s)	435, 597
TspDTI	ATGAA	3 cut(s)	63, 249, 647
Van91I	CCANNNNNTGG	2 cut(s)	224, 571
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	1 cut(s)	578
XspI	CTAG	2 cut(s)	78, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.