RchiOBHm_Chr7g0183471

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003696
Physical Location & Seq
Reverse (-)
4326697 .. 4329918
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16369

Sequence Viewer

Length: 1149 bp
ATGTATCACAGCTTCTTCATAGGAGTGTACTCCCCGACTGCTTATTGCCAGGTTTATGGCTGCAACAAGGACCTCAGCTCCTCTAAGGACTACCACAAGAGGCATAAAGTTTGGGAGGCTCACTCGAAGACCGCCAAAGTCATCGTCAAAGGCATAGAACAGAGGTTTTGTCAGCAATGTAGCAGGTTCCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGTCGTAAACGCCTTGCAGGACACAATGAGCGCCGGAGAAAGCCTCAAGTTCGTATTCATTCCGGAAGAGATGGGAGGTTGCTTCAGTCATATAGTGGCAGCAGTTTTCCGGGGACTATGTTCACAGCTGCATCTTTCGTCTGCCAAGATATACTCCCTAGTAGCATTTTAGATGCTGAGAATTACAGAACAAGTGACTGCAGGCGTATAAAAGTGGAAGGTGGCACTCAGCAAAGGCCTTTGTCAGGAGTGCCTGTTACAAATGGGCATCTGCATTTGAAACCGGTATTCTCTTCTTATGACAATGGAAAACAATATCCCCCAGTTCATGTAAATGGAACTAATAATCTTCCTAGTGGAAGCATACTCGCTGAGACTGGTAGTCAGTATCCACATGAGTTGAGAAGCTTAAATTCTGGTTCATGTTCTATTTATCATGAGGTTGCATTAGGAAGTGAAGACTTCAATGATCTCCACACAACAGCATCAACCGTGCAAGGATTATCGCGCATTCCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCTACAAGCCATTCTTCAGGAATTCCTATTGCTCGTCCCTTGGTAATGCCTGTCAGCCATACACATTACAACCTCAGACAAGTTTCTGATAAGCTTTCCTCGCAGGCTTCCACAAGTGGGGTGTTGAATAAATTTCCTTCTTCGGGTCCCATGATTATATCTGCTGGAAGTGATGCTGATAATTTTGGAGTCTCAAATGGGATTTTCCAAGGATCACAGTTTTTGAACCCCAAAGATCGTCGATCATGTGATGGTGGGACTACTATTGACTTGCTTCAACTTTCATCAGAGCTCCAACGAGTTGAGGATCAACGGCAATCCCTGCAGGTGAAGAAGGAAAATGACGCTTTCTGCTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

382

Amino Acids

42.04

Weight (kDa)

8.94

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 16 - 89 3.4e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
Acc36I ACCTGC 2 cut(s) 174, 1102
AccB7I CCANNNNNTGG 1 cut(s) 196
AccII CGCG 1 cut(s) 733
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 1006, 1101
AcsI RAATTY 4 cut(s) 203, 637, 807, 917
AcuI CTGAAG 2 cut(s) 293, 786
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 5 cut(s) 196, 470, 746, 903, 929
AgeI ACCGGT 1 cut(s) 508
AgsI TTSAA 5 cut(s) 505, 691, 913, 1012, 1064
AhdI GACNNNNNGTC 1 cut(s) 606
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 7 cut(s) 12, 78, 225, 353, 633, 880, 1078
AluI AGCT 7 cut(s) 12, 78, 225, 353, 633, 880, 1078
Alw21I GWGCWC 2 cut(s) 757, 1080
Alw26I GTCTC 2 cut(s) 593, 982
AlwI GGATC 2 cut(s) 1006, 1101
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 1 cut(s) 461
ApeKI GCWGC 5 cut(s) 60, 222, 324, 353, 1140
ApoI RAATTY 4 cut(s) 203, 637, 807, 917
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AsiGI ACCGGT 1 cut(s) 508
AspLEI GCGC 3 cut(s) 222, 258, 735
AspS9I GGNCC 2 cut(s) 70, 932
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 1126
AvaII GGWCC 2 cut(s) 70, 932
BanII GRGCYC 1 cut(s) 1080
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 134, 690
Bbv12I GWGCWC 2 cut(s) 757, 1080
BbvCI CCTCAGC 1 cut(s) 74
BbvI GCAGC 5 cut(s) 47, 234, 336, 340, 1127
BccI CCATC 3 cut(s) 206, 290, 1031
BceAI ACGGC 1 cut(s) 1115
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 624
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 593, 982
BfaI CTAG 2 cut(s) 384, 579
BfmI CTRYAG 2 cut(s) 424, 1109
BfoI RGCGCY 1 cut(s) 259
BfuAI ACCTGC 2 cut(s) 174, 1102
BfuI GTATCC 1 cut(s) 624
BisI GCNGC 5 cut(s) 61, 223, 325, 354, 1141
BlsI GCNGC 5 cut(s) 62, 224, 326, 355, 1142
Bme1390I CCNGG 2 cut(s) 50, 336
Bme18I GGWCC 2 cut(s) 70, 932
BmeRI GACNNNNNGTC 1 cut(s) 606
BmgT120I GGNCC 2 cut(s) 70, 932
BmiI GGNNCC 3 cut(s) 188, 933, 934
BmrFI CCNGG 2 cut(s) 50, 336
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 5 cut(s) 365, 388, 502, 719, 949
BmuI ACTGGG 1 cut(s) 542
BpiI GAAGAC 2 cut(s) 134, 690
BplI GAGNNNNNCTC 4 cut(s) 107, 139, 253, 285
Bpu10I CCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 335, 825, 994
BsaWI WCCGGW 3 cut(s) 287, 508, 746
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 465, 495
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 470, 746, 903, 929
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 2 cut(s) 548, 607
Bse3DI GCAATG 1 cut(s) 182
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 3 cut(s) 335, 825, 994
BseLI CCNNNNNNNGG 5 cut(s) 196, 470, 746, 903, 929
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 5 cut(s) 88, 393, 467, 588, 874
BseNI ACTGG 2 cut(s) 548, 607
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 5 cut(s) 47, 234, 336, 340, 1127
Bsh1236I CGCG 1 cut(s) 733
BshFI GGCC 1 cut(s) 463
BshTI ACCGGT 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 757, 1080
BsiSI CCGG 5 cut(s) 259, 288, 335, 509, 747
BslFI GGGAC 4 cut(s) 352, 807, 918, 1057
BslI CCNNNNNNNGG 5 cut(s) 196, 470, 746, 903, 929
BsmAI GTCTC 2 cut(s) 593, 982
BsmFI GGGAC 4 cut(s) 352, 807, 918, 1057
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 757, 1080
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 5 cut(s) 694, 998, 1021, 1028, 1093
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 5 cut(s) 87, 394, 466, 589, 873
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 1 cut(s) 733
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 3 cut(s) 188, 933, 934
BspMAI CTGCAG 2 cut(s) 428, 1113
BspMI ACCTGC 2 cut(s) 174, 1102
BspPI GGATC 2 cut(s) 1006, 1101
BsrDI GCAATG 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 2 cut(s) 548, 607
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 3 cut(s) 335, 825, 994
BssMI GATC 5 cut(s) 694, 998, 1021, 1028, 1093
BssT1I CCWWGG 2 cut(s) 825, 994
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 718, 1005
Bst6I CTCTTC 3 cut(s) 286, 523, 768
BstAPI GCANNNNNTGC 1 cut(s) 1108
BstC8I GCNNGC 3 cut(s) 198, 428, 891
BstDEI CTNAG 6 cut(s) 74, 84, 402, 453, 597, 860
BstENI CCTNNNNNAGG 1 cut(s) 468
BstFNI CGCG 1 cut(s) 733
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 3 cut(s) 222, 258, 735
BstKTI GATC 5 cut(s) 697, 1001, 1024, 1031, 1096
BstMAI GTCTC 2 cut(s) 593, 982
BstMBI GATC 5 cut(s) 694, 998, 1021, 1028, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 886, 1108
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 334
BstSFI CTRYAG 2 cut(s) 424, 1109
BstUI CGCG 1 cut(s) 733
BstV1I GCAGC 5 cut(s) 47, 234, 336, 340, 1127
BstV2I GAAGAC 2 cut(s) 134, 690
BstXI CCANNNNNNTGG 1 cut(s) 56
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 1 cut(s) 463
BveI ACCTGC 2 cut(s) 174, 1102
Cac8I GCNNGC 3 cut(s) 198, 428, 891
CciI TCATGA 1 cut(s) 661
CfoI GCGC 3 cut(s) 222, 258, 735
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 70, 932
CseI GACGC 1 cut(s) 1139
Csp6I GTAC 1 cut(s) 28
CspAI ACCGGT 1 cut(s) 508
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviAII CATG 6 cut(s) 554, 620, 648, 662, 937, 1032
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 6 cut(s) 74, 84, 402, 453, 597, 860
DpnI GATC 5 cut(s) 696, 1000, 1023, 1030, 1095
DpnII GATC 5 cut(s) 694, 998, 1021, 1028, 1093
DriI GACNNNNNGTC 1 cut(s) 606
Eam1104I CTCTTC 3 cut(s) 286, 523, 768
Eam1105I GACNNNNNGTC 1 cut(s) 606
EarI CTCTTC 3 cut(s) 286, 523, 768
Ecl136II GAGCTC 1 cut(s) 1078
Eco130I CCWWGG 2 cut(s) 825, 994
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 1080
Eco47I GGWCC 2 cut(s) 70, 932
Eco53kI GAGCTC 1 cut(s) 1078
Eco57I CTGAAG 2 cut(s) 293, 786
EcoICRI GAGCTC 1 cut(s) 1078
EcoNI CCTNNNNNAGG 1 cut(s) 468
EcoO109I RGGNCCY 2 cut(s) 70, 932
EcoRI GAATTC 1 cut(s) 807
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 825, 994
EcoT38I GRGCYC 1 cut(s) 1080
ErhI CCWWGG 2 cut(s) 825, 994
FaeI CATG 6 cut(s) 557, 623, 651, 665, 940, 1035
FalI AAGNNNNNCTT 2 cut(s) 784, 816
FaqI GGGAC 4 cut(s) 352, 807, 918, 1057
FatI CATG 6 cut(s) 553, 619, 647, 661, 936, 1031
Fnu4HI GCNGC 5 cut(s) 61, 223, 325, 354, 1141
FriOI GRGCYC 1 cut(s) 1080
Fsp4HI GCNGC 5 cut(s) 61, 223, 325, 354, 1141
FspBI CTAG 2 cut(s) 384, 579
GlaI GCGC 3 cut(s) 221, 257, 734
GluI GCNGC 5 cut(s) 61, 223, 325, 354, 1141
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 1 cut(s) 463
HapII CCGG 5 cut(s) 259, 288, 335, 509, 747
HgaI GACGC 1 cut(s) 1139
HhaI GCGC 3 cut(s) 222, 258, 735
Hin1II CATG 6 cut(s) 557, 623, 651, 665, 940, 1035
Hin6I GCGC 3 cut(s) 220, 256, 733
HinP1I GCGC 3 cut(s) 220, 256, 733
HindIII AAGCTT 2 cut(s) 631, 878
HinfI GANTC 2 cut(s) 743, 975
HpaII CCGG 5 cut(s) 259, 288, 335, 509, 747
HphI GGTGA 1 cut(s) 1126
Hpy166II GTNNAC 3 cut(s) 28, 233, 348
Hpy188I TCNGA 4 cut(s) 863, 874, 1075, 1148
Hpy188III TCNNGA 5 cut(s) 288, 471, 662, 740, 804
Hpy8I GTNNAC 3 cut(s) 28, 233, 348
Hpy99I CGWCG 1 cut(s) 1029
HpyAV CCTTC 3 cut(s) 437, 933, 1114
HpyCH4III ACNGT 2 cut(s) 718, 1005
HpyCH4V TGCA 8 cut(s) 63, 242, 356, 426, 499, 671, 721, 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 886, 1108
HpyF3I CTNAG 6 cut(s) 74, 84, 402, 453, 597, 860
Hsp92II CATG 6 cut(s) 557, 623, 651, 665, 940, 1035
HspAI GCGC 3 cut(s) 220, 256, 733
KflI GGGWCCC 1 cut(s) 932
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 5 cut(s) 694, 998, 1021, 1028, 1093
LmnI GCTCC 2 cut(s) 83, 1083
Lsp1109I GCAGC 5 cut(s) 47, 234, 336, 340, 1127
LweI GCATC 5 cut(s) 365, 388, 502, 719, 949
MaeI CTAG 2 cut(s) 384, 579
MaeIII GTNAC 2 cut(s) 419, 481
MalI GATC 5 cut(s) 696, 1000, 1023, 1030, 1095
MboI GATC 5 cut(s) 694, 998, 1021, 1028, 1093
MhlI GDGCHC 2 cut(s) 757, 1080
MluCI AATT 6 cut(s) 203, 406, 637, 807, 917, 967
MlyI GAGTC 2 cut(s) 737, 984
MmeI TCCRAC 1 cut(s) 1105
MroI TCCGGA 1 cut(s) 287
MseI TTAA 1 cut(s) 635
MslI CAYNNNNRTG 2 cut(s) 23, 558
MspA1I CMGCKG 2 cut(s) 225, 353
MspI CCGG 5 cut(s) 259, 288, 335, 509, 747
MspR9I CCNGG 2 cut(s) 50, 336
Mva1269I GAATGC 1 cut(s) 735
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 733
MwoI GCNNNNNNNGC 2 cut(s) 886, 1108
NciI CCSGG 1 cut(s) 336
NdeII GATC 5 cut(s) 694, 998, 1021, 1028, 1093
NlaIII CATG 6 cut(s) 557, 623, 651, 665, 940, 1035
NlaIV GGNNCC 3 cut(s) 188, 933, 934
NmuCI GTSAC 1 cut(s) 419
PagI TCATGA 1 cut(s) 661
PaqCI CACCTGC 1 cut(s) 1102
PceI AGGCCT 1 cut(s) 463
PctI GAATGC 1 cut(s) 735
PflMI CCANNNNNTGG 1 cut(s) 196
PinAI ACCGGT 1 cut(s) 508
PkrI GCNGC 5 cut(s) 62, 224, 326, 355, 1142
PleI GAGTC 2 cut(s) 737, 983
PpsI GAGTC 2 cut(s) 737, 983
PpuMI RGGWCCY 2 cut(s) 70, 932
Psp124BI GAGCTC 1 cut(s) 1080
Psp5II RGGWCCY 2 cut(s) 70, 932
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 188, 933, 934
PspPI GGNCC 2 cut(s) 70, 932
PspPPI RGGWCCY 2 cut(s) 70, 932
PstI CTGCAG 2 cut(s) 428, 1113
PvuII CAGCTG 2 cut(s) 225, 353
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 23, 558
SacI GAGCTC 1 cut(s) 1080
SaqAI TTAA 1 cut(s) 635
SatI GCNGC 5 cut(s) 61, 223, 325, 354, 1141
Sau3AI GATC 5 cut(s) 694, 998, 1021, 1028, 1093
Sau96I GGNCC 2 cut(s) 70, 932
SbfI CCTGCAGG 1 cut(s) 1113
SchI GAGTC 2 cut(s) 737, 984
ScrFI CCNGG 2 cut(s) 50, 336
SdaI CCTGCAGG 1 cut(s) 1113
SduI GDGCHC 2 cut(s) 757, 1080
SfaNI GCATC 5 cut(s) 365, 388, 502, 719, 949
SfcI CTRYAG 2 cut(s) 424, 1109
SinI GGWCC 2 cut(s) 70, 932
SmiMI CAYNNNNRTG 2 cut(s) 23, 558
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse8387I CCTGCAGG 1 cut(s) 1113
Sse9I AATT 6 cut(s) 203, 406, 637, 807, 917, 967
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 1 cut(s) 132
SspMI CTAG 2 cut(s) 384, 579
SstI GAGCTC 1 cut(s) 1080
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 48, 334
StyI CCWWGG 2 cut(s) 825, 994
TaaI ACNGT 2 cut(s) 718, 1005
TaqI TCGA 2 cut(s) 125, 1027
TasI AATT 6 cut(s) 203, 406, 637, 807, 917, 967
TatI WGTACW 1 cut(s) 27
Tru1I TTAA 1 cut(s) 635
Tru9I TTAA 1 cut(s) 635
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 5 cut(s) 60, 222, 324, 353, 1140
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 5 cut(s) 7, 272, 542, 636, 1059
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 70, 932
XagI CCTNNNNNAGG 1 cut(s) 468
XapI RAATTY 4 cut(s) 203, 637, 807, 917
XspI CTAG 2 cut(s) 384, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.