Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003696

Physical Location & Seq

Genomic Coordinates Reverse (-)

19634624 .. 19637062

Gene Structure 2439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGAATCTTGGAGCTGTATTTCTGAAGGGAAAGGGTTTGTTGTATCAGATGGAACAATTTCACATACTGATTCACTTTCTAGAAGTAGAAATGGTTTGATGGGTTGGGAATTGAAAACCCCTTGTACTTTTATGGAAAGTCAAGGTTTTGGGGAGTTGGGTTTTCCAGAAATGGTCGGCAAACATTTGCAGAGTGATTCAATTAGAGATGCAGTGAGCACAAGTATGTCCACCCCGAATTTATTTTTCGGTGAAGACAAATCCTCTTCGAGGATTTCGAGCTCCATTGTGGACTCCAGCAGTAGGGATTGTTCACTCATTGACTTAAAACTAGGGAGATTGGCTGATCACAGAGATGTTCATAGCGCTAAATTGTCTAAAGGAACTCCCATGTTGTCTTCATCTGGATCATCAACACCCCCTAAGCGAATGCGCGTTTTGGGTGTGTATCCTCGGCCTGCCTACTGCCAGGTTTATGGTTGCAACAAGGATCTTAGCTCCTATAAGGACTACCACAAGAGGCATAAGGTTTGCGAGGTTCACGCGAAGACTGCAAAAGTTATTGTCAACGGCGTAGAACAGAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGTTGGGTGAATTTGATGATGGTAAGCGTAGCTGTCGTAGGCGCCTTGCAGGACACAACGAGCGGCGGAGAAAGCCTCAGATAGGGAGTCATCCTGGAAGAGCTGGGAGGTTCCCTCAGTCATTTGATGGTGGCAGATTTGAAGGGAATATGTTAACAACTGCATCTTTTATCTGCCAAGAGATACTCCCTACTGACATTCCTGAGAAATATGGAACGGGTGACTGGTGCAGGCACATAAAAGTTGAAGGCGGGACTCATTATAGGCCTTTGTCGGGGATGCCTGTTACAAATGGGCATCTGCATTCAAAACCTGTCTTCCCTTCTTACGATATTGGCAAACAGTATCCCTCATTTCATGAAAACGGTACTAATCCTTTAACTGCAAGCGTATTCAGTCAGAATGGTAGTCAATATCCACAAGACATGAGAGGCCTAAGTTCCAGTTCACATTCTATTTTTCATGAGATCGCATTAGGAAGTCAAGATTTCAATGTTTTCAACCCAACTTCAGCAGTTCCACGATTATCAGGAATCTCAGACTCTGGCTGTGCTCGCTCTCTTCTGTCATCTCAATCACAGAACTCTTCAAGCTATTCGTCAGGAATTCCTTTCGCACGCCCCTTAGTCATACCAGCCAGCCGTAAATTCCCTTCTTCAGGAATGAATTCTGGAGCTAGGAGTCACCTGAGTCCCATACTGCCATCTAATGATTGTGATGACACCAATGATTTTGGAATCTCAGATGAGATCATCCAAGGATCAGGTTTTGCAAACACCAAAGATCGTCTACCCTGTCAAGATGGAGCCACTATCGACTTGCTTCAACTGTCATCACAGCTCCAACAAGTAGAGGATCAACGGCAATCCATGCAGGCGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

500

Amino Acids

54.74

Weight (kDa)

8.68

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520 FvH4_5g13520
malus_domestica	MD06G1204000.v1.1 MD14G1215300.v1.1
prunus_persica	Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1 Prupe.5G208300_v2.0.a1
pyrus_communis	pycom06g18230 pycom14g17820
rosa_chinensis	RchiOBHm_Chr7g0183471 RchiOBHm_Chr7g0183501
rosa_laevigata	RLG00000005044
rosa_multiflora	Rmu_co8381461.1_g000001 Rmu_sc0000951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00270430
rosa_rugosa	Rorug06G0458100 Rorug06G0458100
rosa_samantha	Rh7AG059100 Rh7BG059100 Rh7CG060800 Rh7DG058900 Rh7DG059500
rosa_wichuraiana	Rw7G004870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	594
AccB1I	GGYRCC	1 cut(s)	654
AccBSI	CCGCTC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	1402
AccII	CGCG	2 cut(s)	435, 545
AciI	CCGC	3 cut(s)	676, 679, 864
AclWI	GGATC	4 cut(s)	415, 498, 1381, 1476
AcsI	RAATTY	5 cut(s)	238, 623, 1218, 1259, 1279
AcuI	CTGAAG	3 cut(s)	45, 1107, 1254
AcyI	GRCGYC	1 cut(s)	655
AfaI	GTAC	2 cut(s)	127, 982
AfeI	AGCGCT	1 cut(s)	367
AfiI	CCNNNNNNNGG	5 cut(s)	270, 303, 695, 887, 1271
AgsI	TTSAA	9 cut(s)	115, 201, 755, 860, 921, 1105, 1114, 1203, 1439
AjnI	CCWGG	2 cut(s)	468, 706
AluBI	AGCT	8 cut(s)	15, 282, 498, 645, 716, 1206, 1289, 1453
AluI	AGCT	8 cut(s)	15, 282, 498, 645, 716, 1206, 1289, 1453
Alw21I	GWGCWC	3 cut(s)	221, 284, 1168
AlwI	GGATC	4 cut(s)	415, 498, 1381, 1476
AlwNI	CAGNNNCTG	1 cut(s)	1157
Aor51HI	AGCGCT	1 cut(s)	367
AoxI	GGCC	3 cut(s)	455, 878, 1045
ApoI	RAATTY	5 cut(s)	238, 623, 1218, 1259, 1279
Asp700I	GAANNNNTTC	2 cut(s)	58, 1279
AspLEI	GCGC	3 cut(s)	368, 435, 657
AsuHPI	GGTGA	4 cut(s)	263, 632, 845, 1289
BanI	GGYRCC	1 cut(s)	654
BanII	GRGCYC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	1249, 1281
BbsI	GAAGAC	4 cut(s)	261, 390, 554, 922
Bbv12I	GWGCWC	3 cut(s)	221, 284, 1168
BccI	CCATC	6 cut(s)	44, 94, 626, 734, 1324, 1409
BceAI	ACGGC	3 cut(s)	586, 1239, 1490
BciT130I	CCWGG	2 cut(s)	470, 708
BciVI	GTATCC	2 cut(s)	459, 969
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	3 cut(s)	81, 332, 1290
BfoI	RGCGCY	2 cut(s)	369, 658
BfuAI	ACCTGC	1 cut(s)	594
BfuI	GTATCC	2 cut(s)	459, 969
BisI	GCNGC	1 cut(s)	677
BlsI	GCNGC	1 cut(s)	678
Bme1390I	CCNGG	2 cut(s)	470, 708
BmiI	GGNNCC	3 cut(s)	656, 725, 1420
BmrFI	CCNGG	2 cut(s)	470, 708
BmsI	GCATC	4 cut(s)	199, 785, 882, 919
BpiI	GAAGAC	4 cut(s)	261, 390, 554, 922
BplI	GAGNNNNNCTC	4 cut(s)	673, 705, 712, 744
BpmI	CTGGAG	2 cut(s)	280, 1305
Bpu10I	CCTNAGC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	655
BsaJI	CCNNGG	2 cut(s)	452, 1369
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 303, 695, 887, 1271
Bse1I	ACTGG	2 cut(s)	842, 1056
BseBI	CCWGG	2 cut(s)	470, 708
BseDI	CCNNGG	2 cut(s)	452, 1369
BseGI	GGATG	3 cut(s)	703, 897, 1365
BseLI	CCNNNNNNNGG	5 cut(s)	270, 303, 695, 887, 1271
BseMII	CTCAG	6 cut(s)	704, 743, 807, 1164, 1292, 1368
BseNI	ACTGG	2 cut(s)	842, 1056
BseYI	CCCAGC	1 cut(s)	716
BsgI	GTGCAG	1 cut(s)	862
Bsh1236I	CGCG	2 cut(s)	435, 545
BshFI	GGCC	3 cut(s)	457, 880, 1047
BshNI	GGYRCC	1 cut(s)	654
BsiHKAI	GWGCWC	3 cut(s)	221, 284, 1168
BslFI	GGGAC	2 cut(s)	880, 1290
BslI	CCNNNNNNNGG	5 cut(s)	270, 303, 695, 887, 1271
BsmFI	GGGAC	2 cut(s)	880, 1290
BsmI	GAATGC	2 cut(s)	435, 916
BsnI	GGCC	3 cut(s)	457, 880, 1047
Bsp1286I	GDGCHC	3 cut(s)	221, 284, 1168
Bsp143I	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
BspACI	CCGC	3 cut(s)	676, 679, 864
BspANI	GGCC	3 cut(s)	457, 880, 1047
BspCNI	CTCAG	6 cut(s)	703, 742, 808, 1163, 1293, 1367
BspFNI	CGCG	2 cut(s)	435, 545
BspHI	TCATGA	2 cut(s)	970, 1075
BspLI	GGNNCC	3 cut(s)	656, 725, 1420
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	4 cut(s)	415, 498, 1381, 1476
BspQI	GCTCTTC	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	654
BsrBI	CCGCTC	1 cut(s)	676
BsrI	ACTGG	2 cut(s)	842, 1056
BssECI	CCNNGG	2 cut(s)	452, 1369
BssMI	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	1 cut(s)	1369
Bst2UI	CCWGG	2 cut(s)	470, 708
Bst4CI	ACNGT	3 cut(s)	957, 980, 1443
Bst6I	CTCTTC	4 cut(s)	271, 706, 1179, 1204
BstACI	GRCGYC	1 cut(s)	655
BstAPI	GCANNNNNTGC	1 cut(s)	1483
BstC8I	GCNNGC	7 cut(s)	459, 845, 1000, 1168, 1231, 1252, 1488
BstENI	CCTNNNNNAGG	3 cut(s)	268, 693, 1269
BstF5I	GGATG	3 cut(s)	703, 897, 1365
BstFNI	CGCG	2 cut(s)	435, 545
BstH2I	RGCGCY	2 cut(s)	369, 658
BstHHI	GCGC	3 cut(s)	368, 435, 657
BstKTI	GATC	8 cut(s)	349, 410, 493, 1083, 1365, 1376, 1399, 1471
BstMBI	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
BstMWI	GCNNNNNNNGC	5 cut(s)	551, 685, 1167, 1483, 1492
BstNI	CCWGG	2 cut(s)	470, 708
BstSCI	CCNGG	2 cut(s)	468, 706
BstUI	CGCG	2 cut(s)	435, 545
BstV2I	GAAGAC	4 cut(s)	261, 390, 554, 922
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	490
BsuI	GTATCC	2 cut(s)	459, 969
BsuRI	GGCC	3 cut(s)	457, 880, 1047
BtsCI	GGATG	3 cut(s)	703, 897, 1365
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	7 cut(s)	459, 845, 1000, 1168, 1231, 1252, 1488
CaiI	CAGNNNCTG	1 cut(s)	1157
CciI	TCATGA	2 cut(s)	970, 1075
CfoI	GCGC	3 cut(s)	368, 435, 657
Csp6I	GTAC	2 cut(s)	126, 981
CviAII	CATG	5 cut(s)	391, 971, 1039, 1076, 1483
CviQI	GTAC	2 cut(s)	126, 981
DinI	GGCGCC	1 cut(s)	656
DpnI	GATC	8 cut(s)	348, 409, 492, 1082, 1364, 1375, 1398, 1470
DpnII	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
Eam1104I	CTCTTC	4 cut(s)	271, 706, 1179, 1204
EarI	CTCTTC	4 cut(s)	271, 706, 1179, 1204
EciI	GGCGGA	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	1369
Eco147I	AGGCCT	2 cut(s)	880, 1047
Eco24I	GRGCYC	1 cut(s)	284
Eco47III	AGCGCT	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	45, 1107, 1254
EcoICRI	GAGCTC	1 cut(s)	282
EcoNI	CCTNNNNNAGG	3 cut(s)	268, 693, 1269
EcoRI	GAATTC	2 cut(s)	1218, 1279
EcoRII	CCWGG	2 cut(s)	468, 706
EcoT14I	CCWWGG	1 cut(s)	1369
EcoT38I	GRGCYC	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	656
EheI	GGCGCC	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	1369
FaeI	CATG	5 cut(s)	394, 974, 1042, 1079, 1486
FaqI	GGGAC	2 cut(s)	880, 1290
FatI	CATG	5 cut(s)	390, 970, 1038, 1075, 1482
FauI	CCCGC	1 cut(s)	857
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	1402
Fnu4HI	GCNGC	1 cut(s)	677
FokI	GGATG	3 cut(s)	690, 904, 1352
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	677
FspBI	CTAG	3 cut(s)	81, 332, 1290
GlaI	GCGC	3 cut(s)	367, 434, 656
GluI	GCNGC	1 cut(s)	677
GsaI	CCCAGC	1 cut(s)	720
GsuI	CTGGAG	2 cut(s)	280, 1305
HaeII	RGCGCY	2 cut(s)	369, 658
HaeIII	GGCC	3 cut(s)	457, 880, 1047
HhaI	GCGC	3 cut(s)	368, 435, 657
Hin1I	GRCGYC	1 cut(s)	655
Hin1II	CATG	5 cut(s)	394, 974, 1042, 1079, 1486
Hin6I	GCGC	3 cut(s)	366, 433, 655
HinP1I	GCGC	3 cut(s)	366, 433, 655
HincII	GTYRAC	3 cut(s)	568, 593, 768
HindII	GTYRAC	3 cut(s)	568, 593, 768
HpaI	GTTAAC	1 cut(s)	768
HphI	GGTGA	4 cut(s)	263, 632, 845, 1289
Hpy166II	GTNNAC	9 cut(s)	231, 292, 314, 541, 568, 593, 768, 1061, 1403
Hpy188I	TCNGA	6 cut(s)	25, 49, 693, 1014, 1153, 1357
Hpy8I	GTNNAC	9 cut(s)	231, 292, 314, 541, 568, 593, 768, 1061, 1403
HpyAV	CCTTC	5 cut(s)	20, 749, 854, 945, 1275
HpyCH4III	ACNGT	3 cut(s)	957, 980, 1443
HpyF10VI	GCNNNNNNNGC	5 cut(s)	551, 685, 1167, 1483, 1492
Hsp92I	GRCGYC	1 cut(s)	655
Hsp92II	CATG	5 cut(s)	394, 974, 1042, 1079, 1486
HspAI	GCGC	3 cut(s)	366, 433, 655
KasI	GGCGCC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	346
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
LguI	GCTCTTC	1 cut(s)	706
LmnI	GCTCC	6 cut(s)	12, 287, 503, 1286, 1418, 1458
LweI	GCATC	4 cut(s)	199, 785, 882, 919
MaeI	CTAG	3 cut(s)	81, 332, 1290
MaeIII	GTNAC	3 cut(s)	833, 898, 1295
MalI	GATC	8 cut(s)	348, 409, 492, 1082, 1364, 1375, 1398, 1470
MbiI	CCGCTC	1 cut(s)	676
MboI	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
MboII	GAAGA	9 cut(s)	258, 266, 390, 559, 723, 922, 1166, 1191, 1260
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	3 cut(s)	221, 284, 1168
MluCI	AATT	9 cut(s)	57, 110, 201, 238, 371, 623, 1218, 1259, 1279
Mly113I	GGCGCC	1 cut(s)	655
MlyI	GAGTC	6 cut(s)	287, 709, 862, 1148, 1303, 1312
MmeI	TCCRAC	1 cut(s)	1480
MroXI	GAANNNNTTC	2 cut(s)	58, 1279
MseI	TTAA	3 cut(s)	326, 767, 992
MslI	CAYNNNNRTG	2 cut(s)	224, 354
MspR9I	CCNGG	2 cut(s)	470, 708
Mva1269I	GAATGC	2 cut(s)	435, 916
MvaI	CCWGG	2 cut(s)	470, 708
MvnI	CGCG	2 cut(s)	435, 545
MwoI	GCNNNNNNNGC	5 cut(s)	551, 685, 1167, 1483, 1492
NarI	GGCGCC	1 cut(s)	655
NdeII	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
NlaIII	CATG	5 cut(s)	394, 974, 1042, 1079, 1486
NlaIV	GGNNCC	3 cut(s)	656, 725, 1420
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	833, 1295
PagI	TCATGA	2 cut(s)	970, 1075
PceI	AGGCCT	2 cut(s)	880, 1047
PciSI	GCTCTTC	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PctI	GAATGC	2 cut(s)	435, 916
PdmI	GAANNNNTTC	2 cut(s)	58, 1279
PfeI	GAWTC	5 cut(s)	5, 71, 197, 1146, 1350
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	1 cut(s)	678
PleI	GAGTC	6 cut(s)	287, 708, 862, 1148, 1302, 1311
PluTI	GGCGCC	1 cut(s)	658
PpsI	GAGTC	6 cut(s)	287, 708, 862, 1148, 1302, 1311
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	468, 706
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	468, 706
PspN4I	GGNNCC	3 cut(s)	656, 725, 1420
PsrI	GAACNNNNNNTAC	2 cut(s)	295, 327
PstNI	CAGNNNCTG	1 cut(s)	1157
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	2 cut(s)	127, 982
RsaNI	GTAC	2 cut(s)	126, 981
RseI	CAYNNNNRTG	2 cut(s)	224, 354
SacI	GAGCTC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	706
SaqAI	TTAA	3 cut(s)	326, 767, 992
SatI	GCNGC	1 cut(s)	677
Sau3AI	GATC	8 cut(s)	346, 407, 490, 1080, 1362, 1373, 1396, 1468
SchI	GAGTC	6 cut(s)	287, 709, 862, 1148, 1303, 1312
ScrFI	CCNGG	2 cut(s)	470, 708
SduI	GDGCHC	3 cut(s)	221, 284, 1168
SfaNI	GCATC	4 cut(s)	199, 785, 882, 919
SfoI	GGCGCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	2 cut(s)	224, 354
Sse9I	AATT	9 cut(s)	57, 110, 201, 238, 371, 623, 1218, 1259, 1279
SseBI	AGGCCT	2 cut(s)	880, 1047
SsiI	CCGC	3 cut(s)	676, 679, 864
SspDI	GGCGCC	1 cut(s)	654
SspMI	CTAG	3 cut(s)	81, 332, 1290
SstI	GAGCTC	1 cut(s)	284
StuI	AGGCCT	2 cut(s)	880, 1047
StyD4I	CCNGG	2 cut(s)	468, 706
StyI	CCWWGG	1 cut(s)	1369
TaaI	ACNGT	3 cut(s)	957, 980, 1443
TaqI	TCGA	3 cut(s)	269, 278, 1428
TasI	AATT	9 cut(s)	57, 110, 201, 238, 371, 623, 1218, 1259, 1279
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	5 cut(s)	5, 71, 197, 1146, 1350
Tru1I	TTAA	3 cut(s)	326, 767, 992
Tru9I	TTAA	3 cut(s)	326, 767, 992
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	833, 1295
Tsp45I	GTSAC	2 cut(s)	833, 1295
TspDTI	ATGAA	7 cut(s)	350, 390, 599, 959, 987, 1064, 1292
TspRI	CASTG	1 cut(s)	219
XagI	CCTNNNNNAGG	3 cut(s)	268, 693, 1269
XapI	RAATTY	5 cut(s)	238, 623, 1218, 1259, 1279
XbaI	TCTAGA	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	1402
XmnI	GAANNNNTTC	2 cut(s)	58, 1279
XspI	CTAG	3 cut(s)	81, 332, 1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.