Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008954

Physical Location & Seq

Genomic Coordinates Reverse (-)

2355685 .. 2356472

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G030100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAACTTCTGTTCTACCTTACCAATGGAAGCTTGAGCTCAGTGCTACACGGTGCTGGTAAGGGAGGAGCAGATTGGGAGGCTACATATGATGTTGTCTTAGGCATGGCTCCGGCGCTTGCCCACTTGCACCACGACTGTGTGCCTGCTATTTTGCATGGTGATGTCAAAGCCATGAACGTGTTGTTGGGTCCTGGCTATGAGCCTTATCTTGCTGACTTTGGATTCGCTGGGATTGTGAATGGCATTGAGCATGCATCAATGCAGCGTATCACTGAGAAAAGTGATGTCTACATTTTTGGTGTGGTTCTTTTAGAGGTATTAACAGGGAGGCATCCATTAGACCCAACTTTGCCGGGGAACTTGGCAAGGAAACGATATCTGGTTGACATCCTTGATCAGAAGCTTAGGGGAAGAGCTGATCCTACAATGCACGAAATGCTGCAAGCACTAGCTGTGGCATTCCTTTGTATCAGCACTCGTGCTGATGATCGCCCGATGATGAAAGATGTCGTAGCAATGCTTACAGAAATTCGACATCTTGAGACTGCAAGGGGAGAACCAGAATTGTTAAAGGAAGGAGGGTTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

198

Amino Acids

21.52

Weight (kDa)

5.81

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26540 AT5G56040 AT5G56040
fragaria_vesca	FvH4_3g42190
malus_domestica	MD03G1036900.v1.1 MD11G1038100.v1.1
prunus_persica	Prupe.6G029000_v2.0.a1 Prupe.6G030100_v2.0.a1 Prupe.6G082800_v2.0.a1
pyrus_communis	pycom03g02840 pycom11g03230 pycom11g03240
rosa_chinensis	RchiOBHm_Chr5g0075461
rosa_laevigata	RLG00000036565
rosa_multiflora	Rmu_sc0000770.1_g000004
rosa_roxburghii	Rroxscaffold_1G00006040
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496800 Rh5BG518100 Rh5CG541600 Rh5DG531200
rosa_wichuraiana	Rw5G046080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	531
AflIII	ACRYGT	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	5 cut(s)	33, 39, 406, 419, 455
AluI	AGCT	5 cut(s)	33, 39, 406, 419, 455
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	265, 442
ApoI	RAATTY	1 cut(s)	531
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	277, 429
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	2 cut(s)	266, 443
BlsI	GCNGC	2 cut(s)	267, 444
Bme1390I	CCNGG	2 cut(s)	195, 357
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	111, 192
BmrFI	CCNGG	2 cut(s)	195, 357
BmsI	GCATC	2 cut(s)	266, 343
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	55, 563
BpuMI	CCSGG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	334, 390
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	54, 267
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	277, 429
BseYI	CCCAGC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	113, 356
BsmAI	GTCTC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	397, 421, 490
BspCNI	CTCAG	2 cut(s)	53, 268
BspLI	GGNNCC	2 cut(s)	111, 192
BspPI	GGATC	1 cut(s)	416
BspQI	GCTCTTC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	3 cut(s)	397, 421, 490
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	53, 140
Bst6I	CTCTTC	1 cut(s)	409
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstC8I	GCNNGC	4 cut(s)	120, 147, 255, 447
BstDEI	CTNAG	4 cut(s)	40, 100, 276, 407
BstF5I	GGATG	2 cut(s)	334, 390
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	400, 424, 493
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	3 cut(s)	397, 421, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	193, 355
BstV1I	GCAGC	2 cut(s)	277, 429
BtsCI	GGATG	2 cut(s)	334, 390
BtsIMutI	CAGTG	2 cut(s)	48, 273
Cac8I	GCNNGC	4 cut(s)	120, 147, 255, 447
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	191
CviAII	CATG	4 cut(s)	106, 158, 175, 254
DdeI	CTNAG	4 cut(s)	40, 100, 276, 407
DpnI	GATC	3 cut(s)	399, 423, 492
DpnII	GATC	3 cut(s)	397, 421, 490
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	4 cut(s)	109, 161, 178, 257
FaiI	YATR	7 cut(s)	88, 90, 107, 159, 176, 201, 255
FatI	CATG	4 cut(s)	105, 157, 174, 253
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	266, 443
FokI	GGATG	2 cut(s)	321, 377
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	266, 443
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	266, 443
GsaI	CCCAGC	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	119
HapII	CCGG	2 cut(s)	113, 356
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	4 cut(s)	109, 161, 178, 257
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	31, 404
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	2 cut(s)	113, 356
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	292, 388
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	2 cut(s)	292, 388
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	53, 140
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	8 cut(s)	130, 157, 257, 265, 433, 445, 551, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	4 cut(s)	40, 100, 276, 407
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	4 cut(s)	109, 161, 178, 257
HspAI	GCGC	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	397, 421, 490
LguI	GCTCTTC	1 cut(s)	409
LmnI	GCTCC	2 cut(s)	68, 115
Lsp1109I	GCAGC	2 cut(s)	277, 429
LweI	GCATC	2 cut(s)	266, 343
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	180
MalI	GATC	3 cut(s)	399, 423, 492
MboI	GATC	3 cut(s)	397, 421, 490
MboII	GAAGA	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	531, 566
MnlI	CCTC	5 cut(s)	59, 73, 310, 324, 575
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	2 cut(s)	323, 572
MslI	CAYNNNNRTG	3 cut(s)	138, 162, 179
MspI	CCGG	2 cut(s)	113, 356
MspR9I	CCNGG	2 cut(s)	195, 357
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	439
NciI	CCSGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	3 cut(s)	397, 421, 490
NlaIII	CATG	4 cut(s)	109, 161, 178, 257
NlaIV	GGNNCC	2 cut(s)	111, 192
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	409
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	267, 444
PpuMI	RGGWCCY	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	111, 192
PspPI	GGNCC	1 cut(s)	191
PspPPI	RGGWCCY	1 cut(s)	191
RseI	CAYNNNNRTG	3 cut(s)	138, 162, 179
SacI	GAGCTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	323, 572
SatI	GCNGC	2 cut(s)	266, 443
Sau3AI	GATC	3 cut(s)	397, 421, 490
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	195, 357
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	8 cut(s)	21, 35, 41, 183, 321, 408, 421, 457
SfaNI	GCATC	2 cut(s)	266, 343
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	138, 162, 179
SmlI	CTYRAG	2 cut(s)	34, 542
SmoI	CTYRAG	2 cut(s)	34, 542
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	2 cut(s)	531, 566
SspMI	CTAG	1 cut(s)	452
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	193, 355
TaaI	ACNGT	2 cut(s)	53, 140
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	535
TasI	AATT	2 cut(s)	531, 566
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	323, 572
Tru9I	TTAA	2 cut(s)	323, 572
TscAI	CASTG	2 cut(s)	48, 280
TseI	GCWGC	2 cut(s)	265, 442
TspDTI	ATGAA	3 cut(s)	17, 191, 518
TspRI	CASTG	2 cut(s)	48, 280
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.