Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008954

Physical Location & Seq

Genomic Coordinates Forward (+)

2504706 .. 2505621

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACCTTGTACCAGAAGCTCGATTTCTCTATTGATGACATTGTCAGGAATTTGACATCATCGAATGTGATTGGCACCGGAAGCTCTGGAGTTGTATACAGAGTGACAATTCCGAATGGAGAAACACTAGCAGTGAAGAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCCGAAATTCAAACGCTTGGATTAATTAGGCACAAGAACATCATCCGCCTCTTGGGTTGGGGTTCAAATCGAAACCTGAAAATTCTGTTCTACGATTACCTCCCCAATGGAAGCTTGAGCTCACTACTACATGGTTCAGGAAAGGGAGGAGCAGATTGGGAAGCTAGATACGATGTTGTTCTAGGCGTGGCTCATGCGCTTGCGTACTTGCACCATGACTGCGTGCCGGCTATTCTGCATGGTGATGTGAAAGCCATGAACGTTCTGTTGGGTCCTGGCTATGAGCCTTATCTTGCTGACTTTGGGTTAGCTAGGATTGTGAACAGCAATGGTGATGATGAATTTTCGAAAACAGGTCAACGGCCTCAATTAGCTGGTTCATATGGATACATGGCTCCAGGTAATCTATACTTTCAACAATGTATAAGTATCACTGAGAAGAGCGATGTGTACAGTTTCGGTGTTGTTCTTTTAGAGGTACTAACAGGAAGGCATCCATTAGACCCAACTCTGCCCGGAGGTGCACATTTAGTTCAATGGATTCGAGATCACATGGCGAGCAAGCGAGAGCCTATTGACATTCTCGATCAAAAGCTCAGGGGAAGATCGATCCTACAATGCACGAAATGCTGCAGACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

272

Amino Acids

29.88

Weight (kDa)

7.14

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26540 AT5G56040 AT5G56040
fragaria_vesca	FvH4_3g42190
malus_domestica	MD03G1036900.v1.1 MD11G1038100.v1.1
prunus_persica	Prupe.6G029000_v2.0.a1 Prupe.6G030100_v2.0.a1 Prupe.6G082800_v2.0.a1
pyrus_communis	pycom03g02840 pycom11g03230 pycom11g03240
rosa_chinensis	RchiOBHm_Chr5g0075461
rosa_laevigata	RLG00000036565
rosa_multiflora	Rmu_sc0000770.1_g000004
rosa_roxburghii	Rroxscaffold_1G00006040
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496800 Rh5BG518100 Rh5CG541600 Rh5DG531200
rosa_wichuraiana	Rw5G046080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	220
AclI	AACGTT	1 cut(s)	435
AclWI	GGATC	1 cut(s)	778
AcsI	RAATTY	4 cut(s)	49, 180, 255, 515
AfaI	GTAC	4 cut(s)	11, 380, 626, 654
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	5 cut(s)	172, 185, 240, 590, 710
AjnI	CCWGG	2 cut(s)	448, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	8 cut(s)	19, 84, 288, 294, 338, 485, 548, 769
AluI	AGCT	8 cut(s)	19, 84, 288, 294, 338, 485, 548, 769
Alw21I	GWGCWC	2 cut(s)	296, 700
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	1 cut(s)	778
AoxI	GGCC	1 cut(s)	536
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	1 cut(s)	804
ApoI	RAATTY	4 cut(s)	49, 180, 255, 515
AseI	ATTAAT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	428, 518
AsuII	TTCGAA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	2 cut(s)	296, 700
BbvI	GCAGC	1 cut(s)	791
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	2 cut(s)	450, 573
BciVI	GTATCC	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	690
BfaI	CTAG	5 cut(s)	128, 339, 356, 486, 814
BfmI	CTRYAG	1 cut(s)	805
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	1 cut(s)	805
BlsI	GCNGC	1 cut(s)	806
Bme1390I	CCNGG	3 cut(s)	450, 573, 690
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	3 cut(s)	76, 447, 570
BmrFI	CCNGG	3 cut(s)	450, 573, 690
BmsI	GCATC	1 cut(s)	676
BpmI	CTGGAG	2 cut(s)	108, 555
Bpu10I	CCTNAGC	1 cut(s)	770
Bpu14I	TTCGAA	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	690
Bsa29I	ATCGAT	1 cut(s)	782
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	450, 573
BseCI	ATCGAT	1 cut(s)	782
BseGI	GGATG	2 cut(s)	216, 667
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	600, 784
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	791
BshFI	GGCC	1 cut(s)	538
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	296, 700
BsiSI	CCGG	3 cut(s)	78, 401, 690
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	538
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	296, 700
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	721, 760, 779, 783
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	2 cut(s)	601, 783
BspDI	ATCGAT	1 cut(s)	782
BspLI	GGNNCC	3 cut(s)	76, 447, 570
BspMAI	CTGCAG	1 cut(s)	809
BspPI	GGATC	1 cut(s)	778
BspQI	GCTCTTC	1 cut(s)	608
BspT104I	TTCGAA	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	400
BssMI	GATC	4 cut(s)	721, 760, 779, 783
BssNAI	GTATAC	1 cut(s)	97
Bst1107I	GTATAC	1 cut(s)	97
Bst2UI	CCWGG	2 cut(s)	450, 573
Bst4CI	ACNGT	1 cut(s)	629
Bst6I	CTCTTC	2 cut(s)	150, 608
BstAPI	GCANNNNNTGC	1 cut(s)	801
BstAUI	TGTACA	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	5 cut(s)	375, 398, 402, 733, 737
BstDEI	CTNAG	2 cut(s)	609, 770
BstF5I	GGATG	2 cut(s)	216, 667
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	4 cut(s)	724, 763, 782, 786
BstMBI	GATC	4 cut(s)	721, 760, 779, 783
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 801
BstNI	CCWGG	2 cut(s)	450, 573
BstSCI	CCNGG	3 cut(s)	448, 571, 688
BstSFI	CTRYAG	1 cut(s)	805
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	1 cut(s)	791
BstZ17I	GTATAC	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	782
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	538
BsuTUI	ATCGAT	1 cut(s)	782
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	216, 667
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 606
Cac8I	GCNNGC	5 cut(s)	375, 398, 402, 733, 737
CfoI	GCGC	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	446
ClaI	ATCGAT	1 cut(s)	782
Csp6I	GTAC	4 cut(s)	10, 379, 625, 653
CviAII	CATG	7 cut(s)	305, 368, 389, 413, 430, 565, 727
CviQI	GTAC	4 cut(s)	10, 379, 625, 653
DdeI	CTNAG	2 cut(s)	609, 770
DpnI	GATC	4 cut(s)	723, 762, 781, 785
DpnII	GATC	4 cut(s)	721, 760, 779, 783
Eam1104I	CTCTTC	2 cut(s)	150, 608
EarI	CTCTTC	2 cut(s)	150, 608
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	448, 571
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	7 cut(s)	308, 371, 392, 416, 433, 568, 730
FatI	CATG	7 cut(s)	304, 367, 388, 412, 429, 564, 726
FauNDI	CATATG	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	805
FokI	GGATG	2 cut(s)	203, 654
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	805
FspBI	CTAG	5 cut(s)	128, 339, 356, 486, 814
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	805
GsuI	CTGGAG	2 cut(s)	108, 555
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	3 cut(s)	78, 401, 690
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	7 cut(s)	308, 371, 392, 416, 433, 568, 730
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	533
HindII	GTYRAC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	286
HinfI	GANTC	2 cut(s)	158, 715
HpaII	CCGG	3 cut(s)	78, 401, 690
HphI	GGTGA	2 cut(s)	428, 518
Hpy166II	GTNNAC	5 cut(s)	97, 496, 533, 625, 698
Hpy188I	TCNGA	3 cut(s)	114, 154, 178
Hpy188III	TCNNGA	6 cut(s)	46, 87, 162, 312, 719, 758
Hpy8I	GTNNAC	5 cut(s)	97, 496, 533, 625, 698
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	1 cut(s)	629
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	385, 412, 698, 795, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 801
HpyF3I	CTNAG	2 cut(s)	609, 770
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	7 cut(s)	308, 371, 392, 416, 433, 568, 730
HspAI	GCGC	1 cut(s)	371
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	721, 760, 779, 783
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	3 cut(s)	164, 323, 574
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	5 cut(s)	128, 339, 356, 486, 814
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	4 cut(s)	723, 762, 781, 785
MboI	GATC	4 cut(s)	721, 760, 779, 783
MboII	GAAGA	5 cut(s)	148, 151, 167, 625, 789
MhlI	GDGCHC	2 cut(s)	296, 700
MluCI	AATT	8 cut(s)	49, 108, 172, 180, 198, 255, 515, 542
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	6 cut(s)	233, 284, 314, 549, 643, 686
MroNI	GCCGGC	1 cut(s)	400
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	3 cut(s)	78, 401, 690
MspR9I	CCNGG	3 cut(s)	450, 573, 690
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	2 cut(s)	450, 573
MwoI	GCNNNNNNNGC	2 cut(s)	81, 801
NaeI	GCCGGC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	4 cut(s)	721, 760, 779, 783
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	7 cut(s)	308, 371, 392, 416, 433, 568, 730
NlaIV	GGNNCC	3 cut(s)	76, 447, 570
NmuCI	GTSAC	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	715
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	806
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	446
PshBI	ATTAAT	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	448, 571
PspGI	CCWGG	2 cut(s)	448, 571
PspN4I	GGNNCC	3 cut(s)	76, 447, 570
PspPI	GGNCC	1 cut(s)	446
PspPPI	RGGWCCY	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	809
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	4 cut(s)	11, 380, 626, 654
RsaNI	GTAC	4 cut(s)	10, 379, 625, 653
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	805
Sau3AI	GATC	4 cut(s)	721, 760, 779, 783
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	450, 573, 690
SduI	GDGCHC	2 cut(s)	296, 700
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	805
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	8 cut(s)	49, 108, 172, 180, 198, 255, 515, 542
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	5 cut(s)	128, 339, 356, 486, 814
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	448, 571, 688
TaaI	ACNGT	1 cut(s)	629
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	7 cut(s)	21, 62, 244, 521, 718, 759, 782
TasI	AATT	8 cut(s)	49, 108, 172, 180, 198, 255, 515, 542
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	2 cut(s)	138, 613
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	804
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	3 cut(s)	446, 528, 543
TspRI	CASTG	2 cut(s)	138, 613
Tth111I	GACNNNGTC	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	197
XapI	RAATTY	4 cut(s)	49, 180, 255, 515
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	5 cut(s)	128, 339, 356, 486, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.