Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008954

Physical Location & Seq

Genomic Coordinates Forward (+)

5579828 .. 5580702

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G082800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATTTTTCGAAACATTAATAACAACAAAATCCCTAATTTTGAGGTCATTACAATCAGGCTCTTGGGTTGGGGTTTGAACCGACGCCTGAAACTTCTGTTCTACCTTACCAATGGAAGCTTGAGCTCAGTGCTACAAGGTGCTGGTAAGGGAGGAGCAGATTGGGAGGCTACATATGATGTTGTCTTAGGCATGGCTCAGGCGCTTGCCCACTTGCACCACGACTGTGTGCCTGCTATTTTGCATGGTGATGTCAAAGCCGTGAACGTGTTGTTGGGTCCTGGCTATGAGCCTTATCTTGCTGGCTTTGGATTCGCTGGGATTGTGAATGGCATTGAGCATGCATCAATGCAGCGTATCACTGAGAAAAATGATGTCTACATTTTTGGTGTGGTTCTTTTAGAGGTATTAACAGGGAGGCATCCAATAGACCCAACTTTGCCGGGGAACTTGGCAAGGAAACGATATCTGGTTGATATCCTTGATCAGAAGCTTAGGGGAAGAGCTGATCCTACAATGCACGAAATGCTGCAAGCACTAGCTGTGGCATTCCTTTGTTTCAGCACTCGTGCTGATGATCGCCCGATGATGAAAGATGTCGTAGCAATGCTTACAGAAATTCAACATCTTGAGACTGCAAGGGGAGAACCAGAATTGTTAAAGGAAGGAGGGTTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

227

Amino Acids

24.97

Weight (kDa)

6.44

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26540 AT5G56040 AT5G56040
fragaria_vesca	FvH4_3g42190
malus_domestica	MD03G1036900.v1.1 MD11G1038100.v1.1
prunus_persica	Prupe.6G029000_v2.0.a1 Prupe.6G030100_v2.0.a1 Prupe.6G082800_v2.0.a1
pyrus_communis	pycom03g02840 pycom11g03230 pycom11g03240
rosa_chinensis	RchiOBHm_Chr5g0075461
rosa_laevigata	RLG00000036565
rosa_multiflora	Rmu_sc0000770.1_g000004
rosa_roxburghii	Rroxscaffold_1G00006040
rosa_rugosa	Rorug05G0439700
rosa_samantha	Rh5AG496800 Rh5BG518100 Rh5CG541600 Rh5DG531200
rosa_wichuraiana	Rw5G046080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	79, 623
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	5 cut(s)	120, 126, 493, 506, 542
AluI	AGCT	5 cut(s)	120, 126, 493, 506, 542
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	503
ApeKI	GCWGC	2 cut(s)	352, 529
ApoI	RAATTY	1 cut(s)	618
AseI	ATTAAT	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	128
BauI	CACGAG	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	364, 516
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	539
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	2 cut(s)	353, 530
BlsI	GCNGC	2 cut(s)	354, 531
Bme1390I	CCNGG	2 cut(s)	282, 444
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	282, 444
BmsI	GCATC	2 cut(s)	353, 430
Bpu10I	CCTNAGC	2 cut(s)	198, 494
Bpu14I	TTCGAA	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	142, 650
BpuMI	CCSGG	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	3 cut(s)	141, 212, 354
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	364, 516
BseYI	CCCAGC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	484, 508, 577
BspCNI	CTCAG	3 cut(s)	140, 211, 355
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	503
BspQI	GCTCTTC	1 cut(s)	496
BspT104I	TTCGAA	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	612
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	3 cut(s)	484, 508, 577
BssNI	GRCGYC	1 cut(s)	85
BssSI	CACGAG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	5 cut(s)	207, 234, 304, 342, 534
BstDEI	CTNAG	5 cut(s)	127, 187, 198, 363, 494
BstF5I	GGATG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	487, 511, 580
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	3 cut(s)	484, 508, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	280, 442
BstV1I	GCAGC	2 cut(s)	364, 516
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	135, 360
Cac8I	GCNNGC	5 cut(s)	207, 234, 304, 342, 534
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	93
CviAII	CATG	3 cut(s)	193, 245, 341
DdeI	CTNAG	5 cut(s)	127, 187, 198, 363, 494
DpnI	GATC	3 cut(s)	486, 510, 579
DpnII	GATC	3 cut(s)	484, 508, 577
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	128
Eco32I	GATATC	2 cut(s)	467, 478
Eco47I	GGWCC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	280
EcoRV	GATATC	2 cut(s)	467, 478
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	128
FaeI	CATG	3 cut(s)	196, 248, 344
FaiI	YATR	6 cut(s)	175, 177, 194, 246, 288, 342
FatI	CATG	3 cut(s)	192, 244, 340
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	353, 530
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	353, 530
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	353, 530
GsaI	CCCAGC	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	206
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	196, 248, 344
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HindIII	AAGCTT	2 cut(s)	118, 491
HinfI	GANTC	1 cut(s)	312
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	265, 379
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	2 cut(s)	265, 379
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	659
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	8 cut(s)	217, 244, 344, 352, 520, 532, 638, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	5 cut(s)	127, 187, 198, 363, 494
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	3 cut(s)	196, 248, 344
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	484, 508, 577
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	2 cut(s)	364, 516
LweI	GCATC	2 cut(s)	353, 430
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	267
MalI	GATC	3 cut(s)	486, 510, 579
MboI	GATC	3 cut(s)	484, 508, 577
MboII	GAAGA	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	3 cut(s)	37, 618, 653
MnlI	CCTC	6 cut(s)	37, 146, 160, 397, 411, 662
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	3 cut(s)	18, 410, 659
MslI	CAYNNNNRTG	2 cut(s)	225, 249
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	282, 444
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	526
NciI	CCSGG	1 cut(s)	444
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	3 cut(s)	484, 508, 577
NlaIII	CATG	3 cut(s)	196, 248, 344
NlaIV	GGNNCC	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	346
NspI	RCATGY	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	10
OliI	CACNNNNGTG	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	354, 531
PpuMI	RGGWCCY	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	278
PspPPI	RGGWCCY	1 cut(s)	278
RseI	CAYNNNNRTG	2 cut(s)	225, 249
SacI	GAGCTC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	18, 410, 659
SatI	GCNGC	2 cut(s)	353, 530
Sau3AI	GATC	3 cut(s)	484, 508, 577
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	282, 444
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	353, 430
SfuI	TTCGAA	1 cut(s)	10
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	225, 249
SmlI	CTYRAG	2 cut(s)	121, 629
SmoI	CTYRAG	2 cut(s)	121, 629
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	3 cut(s)	37, 618, 653
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	280, 442
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	10
TasI	AATT	3 cut(s)	37, 618, 653
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	3 cut(s)	18, 410, 659
Tru9I	TTAA	3 cut(s)	18, 410, 659
TscAI	CASTG	2 cut(s)	135, 367
TseI	GCWGC	2 cut(s)	352, 529
TspDTI	ATGAA	1 cut(s)	605
TspRI	CASTG	2 cut(s)	135, 367
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	1 cut(s)	618
XceI	RCATGY	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.