Prupe.6G033300_v2.0.a1

Protein RFT1 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
2537867 .. 2544541
6675 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G033300.5

Sequence Viewer

Length: 1587 bp
ATGTCAAGAGCTTCGTCGGTTGGATCTCAATCTCAATCACTCACTGACAGCAGTTTCTCTCGCACCTTCAAGTACTTGCTCGCTACGCAATTCTTGTCAAGGGGAATTCCATTTATATTCAATGCGTGGATCGTCAGGCACCTTTCAGTTGAGGACTTTGCGCTCTATGGAGTACAATTTCCTCTTTTTGTCACCTGTGTACTGTTTCTCAGTCGTGAGGGAGTTCGGCGAGCATGCCTTCGGGCAGACATGAAAAGTGATGGTACTTCAACAGAAGAAAATATAGCAAAGATAATGACATTTGCCTGGTTAATTCCCCCATGTGGAATTCTTCTTACTGTTGCAGCATGCGGTGTTGTCTTCTGGAATAAAGGCTTAAGCTTTTCTGATCCATATGGGCAAGCAATCTTGATTAATGGCTCTGCATGTATTTTTGAACTACTGGCAGAGCCCTTGTATATCCTTTCTCAGAACTTGCTTCTGCTTAAACTAAGGCTAGTAGTTGAGACAGTTGCTACTCTTTCCCGCTGCATAACAATGTTCATTCTCATTGTCAAGCAAACTTACTTGGATAAAGCGATTGTATTTTCATTGTCACAAACTGCATATGGAGTGTGCTTGTTCCTAGGTTATTGGGTCTATTTTCTTCTTTTTGGTACATGTAGAAGTTCTGCTATTTTTCCATTCAGAGTAAAGAATAAGAAGCATTATGATGGGCAGCTGTCTGACATGTGTAAGTTGTTTACACTTCAATCCTTCATGAAGTTGATCCTTCAAGAAGGACAAAGTCTTGTCCTTTTATGGTGGGCGACATATTATAACCAAGCCGTATATGGACTTGTGGACAAATTAGGGAGCCTAGTGGTGAGGCTGGTGTTTCTTCCTTTTGAAGAAAGTTCCTATGCTACATTTGCAAGGTCTGCATCAGGAAAAGACCCAAATAAAGACAGGAGGCTAGGAAGTAGCCTTACAGAGGCCCTTAAACTGGTTTTGTTAATAGGTCTTGTATTTATGGCGTTTGGTCCAAGTTATGCTTATTCTCTCATCAGATTGTTGTACGGACAGAAATGGAGTGATGGGGAGGCATCAACAGCCCTTCGATATTATTGCATTTATATAATTGTTCTGGCTATGAATGGAACATCTGAATCATTTCTACATGCCGTTGCAAAAGAGAAGCAACTAGTACAGTCAAACCTTTCAACGTTTATGTTCGCAATAATACATGTAGTACTGAATATCCTGCTGATCAACTCAGCTGGTGCAGTTGGCTTAATTTTGGCAAACTCAATAAATATGATCCTGAGAATAGCGTACTCTGGGGTATTCATCAAGCAATATTTCCAGGATTCCTCCTCATTTTCTTTTTACAGATGCTTACCTTCAGGATGGAAGGTCCTACTGTTTTCAGGGATAACAACTATTATTTCTGAGAGGATATTTCTGGACAGGGAGAATTTCTGGCCGACTTTCTTTGTTCATTTCTCCATTGGGGTCACTTGCTTCTGCATGTCGTCGTTTGTCTTATATCGCCGCGAGAGATCCTTCATCAACAGAATTATCCGCTTCCGCGATCACTCGGACTAA

Protein Analysis

529

Amino Acids

59.76

Weight (kDa)

9.25

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AccB1I GGYRCC 1 cut(s) 138
AccII CGCG 2 cut(s) 1536, 1572
AciI CCGC 5 cut(s) 351, 526, 1534, 1564, 1570
AclI AACGTT 1 cut(s) 1205
AclWI GGATC 6 cut(s) 31, 137, 383, 763, 1294, 1536
AcoI YGGCCR 1 cut(s) 1463
AcsI RAATTY 3 cut(s) 105, 327, 1456
AcuI CTGAAG 1 cut(s) 1368
AfaI GTAC 9 cut(s) 74, 174, 201, 265, 658, 1058, 1188, 1233, 1316
AfiI CCNNNNNNNGG 3 cut(s) 323, 973, 985
AflII CTTAAG 1 cut(s) 376
AflIII ACRYGT 3 cut(s) 659, 729, 1225
AgsI TTSAA 8 cut(s) 70, 121, 270, 437, 752, 776, 890, 1203
AhlI ACTAGT 1 cut(s) 1183
AjnI CCWGG 2 cut(s) 305, 1344
AluBI AGCT 4 cut(s) 11, 381, 721, 1259
AluI AGCT 4 cut(s) 11, 381, 721, 1259
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 6 cut(s) 31, 137, 383, 763, 1294, 1536
AoxI GGCC 2 cut(s) 975, 1463
ApeKI GCWGC 3 cut(s) 344, 528, 718
ApoI RAATTY 3 cut(s) 105, 327, 1456
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 1152
AspA2I CCTAGG 1 cut(s) 625
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 3 cut(s) 976, 1022, 1396
AsuHPI GGTGA 2 cut(s) 184, 877
AvaII GGWCC 2 cut(s) 1022, 1396
AvrII CCTAGG 1 cut(s) 625
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 453
BarI GAAGNNNNNNTAC 2 cut(s) 952, 984
BbsI GAAGAC 1 cut(s) 352
BbvI GCAGC 3 cut(s) 356, 515, 730
BccI CCATC 4 cut(s) 254, 707, 1070, 1383
BceAI ACGGC 2 cut(s) 812, 1148
BcgI CGANNNNNNTGC 2 cut(s) 1089, 1123
BciT130I CCWGG 2 cut(s) 307, 1346
BclI TGATCA 1 cut(s) 1248
BcoDI GTCTC 1 cut(s) 500
BcuI ACTAGT 1 cut(s) 1183
BfaI CTAG 5 cut(s) 497, 626, 860, 956, 1184
BfrI CTTAAG 1 cut(s) 376
BisI GCNGC 4 cut(s) 345, 529, 719, 1534
BlnI CCTAGG 1 cut(s) 625
BlsI GCNGC 4 cut(s) 346, 530, 720, 1535
BmcAI AGTACT 2 cut(s) 74, 1233
Bme1390I CCNGG 2 cut(s) 307, 1346
Bme18I GGWCC 2 cut(s) 1022, 1396
BmgT120I GGNCC 3 cut(s) 976, 1022, 1396
BmiI GGNNCC 2 cut(s) 140, 857
BmrFI CCNGG 2 cut(s) 307, 1346
BmsI GCATC 3 cut(s) 932, 1094, 1364
BpiI GAAGAC 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 625
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 973, 985
Bse1I ACTGG 2 cut(s) 447, 990
Bse8I GATNNNNATC 1 cut(s) 28
BseBI CCWGG 2 cut(s) 307, 1346
BseDI CCNNGG 1 cut(s) 625
BseGI GGATG 1 cut(s) 1394
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 323, 973, 985
BseMII CTCAG 5 cut(s) 223, 482, 1269, 1295, 1422
BseNI ACTGG 2 cut(s) 447, 990
BseRI GAGGAG 1 cut(s) 1345
BseXI GCAGC 3 cut(s) 356, 515, 730
BsgI GTGCAG 1 cut(s) 1284
Bsh1236I CGCG 2 cut(s) 1536, 1572
BshFI GGCC 2 cut(s) 977, 1465
BshNI GGYRCC 1 cut(s) 138
BslI CCNNNNNNNGG 3 cut(s) 323, 973, 985
BsmAI GTCTC 1 cut(s) 500
BsnI GGCC 2 cut(s) 977, 1465
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
BspACI CCGC 5 cut(s) 351, 526, 1534, 1564, 1570
BspANI GGCC 2 cut(s) 977, 1465
BspCNI CTCAG 5 cut(s) 222, 481, 1268, 1296, 1423
BspFNI CGCG 2 cut(s) 1536, 1572
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 2 cut(s) 140, 857
BspPI GGATC 6 cut(s) 31, 137, 383, 763, 1294, 1536
BspT107I GGYRCC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 376
BsrI ACTGG 2 cut(s) 447, 990
BssECI CCNNGG 1 cut(s) 625
BssMI GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
BssT1I CCWWGG 1 cut(s) 625
Bst2UI CCWGG 2 cut(s) 307, 1346
Bst4CI ACNGT 5 cut(s) 204, 340, 511, 1191, 1404
BstAFI CTTAAG 1 cut(s) 376
BstAPI GCANNNNNTGC 1 cut(s) 920
BstC8I GCNNGC 5 cut(s) 81, 231, 235, 349, 402
BstDEI CTNAG 6 cut(s) 209, 468, 491, 1255, 1304, 1431
BstENI CCTNNNNNAGG 1 cut(s) 971
BstF5I GGATG 1 cut(s) 1394
BstFNI CGCG 2 cut(s) 1536, 1572
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 8 cut(s) 26, 132, 391, 771, 1251, 1302, 1544, 1576
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
BstMWI GCNNNNNNNGC 4 cut(s) 85, 911, 920, 1091
BstNI CCWGG 2 cut(s) 307, 1346
BstNSI RCATGY 8 cut(s) 237, 351, 429, 663, 733, 1163, 1229, 1513
BstSCI CCNGG 2 cut(s) 305, 1344
BstUI CGCG 2 cut(s) 1536, 1572
BstV1I GCAGC 3 cut(s) 356, 515, 730
BstV2I GAAGAC 1 cut(s) 352
BstX2I RGATCY 2 cut(s) 23, 1541
BstYI RGATCY 2 cut(s) 23, 1541
BsuRI GGCC 2 cut(s) 977, 1465
BtsCI GGATG 1 cut(s) 1394
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 5 cut(s) 81, 231, 235, 349, 402
CciI TCATGA 1 cut(s) 759
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 3 cut(s) 976, 1022, 1396
Csp6I GTAC 9 cut(s) 73, 173, 200, 264, 657, 1057, 1187, 1232, 1315
CviQI GTAC 9 cut(s) 73, 173, 200, 264, 657, 1057, 1187, 1232, 1315
DdeI CTNAG 6 cut(s) 209, 468, 491, 1255, 1304, 1431
DpnI GATC 8 cut(s) 25, 131, 390, 770, 1250, 1301, 1543, 1575
DpnII GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
EaeI YGGCCR 1 cut(s) 1463
Eco130I CCWWGG 1 cut(s) 625
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 1022, 1396
Eco57I CTGAAG 1 cut(s) 1368
EcoNI CCTNNNNNAGG 1 cut(s) 971
EcoO109I RGGNCCY 2 cut(s) 976, 1396
EcoRI GAATTC 2 cut(s) 105, 327
EcoRII CCWGG 2 cut(s) 305, 1344
EcoT14I CCWWGG 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 625
FalI AAGNNNNNCTT 2 cut(s) 1018, 1050
FauI CCCGC 1 cut(s) 533
FauNDI CATATG 2 cut(s) 394, 607
FbaI TGATCA 1 cut(s) 1248
Fnu4HI GCNGC 4 cut(s) 345, 529, 719, 1534
FokI GGATG 1 cut(s) 1401
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 4 cut(s) 345, 529, 719, 1534
FspBI CTAG 5 cut(s) 497, 626, 860, 956, 1184
GlaI GCGC 1 cut(s) 162
GluI GCNGC 4 cut(s) 345, 529, 719, 1534
HaeIII GGCC 2 cut(s) 977, 1465
HhaI GCGC 1 cut(s) 163
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 2 cut(s) 1148, 1349
HphI GGTGA 2 cut(s) 184, 877
Hpy166II GTNNAC 3 cut(s) 200, 744, 844
Hpy188I TCNGA 8 cut(s) 388, 471, 689, 727, 1049, 1147, 1432, 1582
Hpy8I GTNNAC 3 cut(s) 200, 744, 844
Hpy99I CGWCG 2 cut(s) 19, 1519
HpyAV CCTTC 9 cut(s) 76, 248, 766, 773, 782, 1106, 1387, 1392, 1555
HpyCH4III ACNGT 5 cut(s) 204, 340, 511, 1191, 1404
HpyCH4IV ACGT 1 cut(s) 1205
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 911, 920, 1091
HpyF3I CTNAG 6 cut(s) 209, 468, 491, 1255, 1304, 1431
HpySE526I ACGT 1 cut(s) 1205
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 1248
Kzo9I GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
LmnI GCTCC 1 cut(s) 855
Lsp1109I GCAGC 3 cut(s) 356, 515, 730
LweI GCATC 3 cut(s) 932, 1094, 1364
MaeI CTAG 5 cut(s) 497, 626, 860, 956, 1184
MaeII ACGT 1 cut(s) 1205
MaeIII GTNAC 3 cut(s) 190, 594, 1495
MalI GATC 8 cut(s) 25, 131, 390, 770, 1250, 1301, 1543, 1575
MboI GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
MboII GAAGA 6 cut(s) 287, 323, 352, 638, 872, 902
MflI RGATCY 2 cut(s) 23, 1541
MhlI GDGCHC 1 cut(s) 453
MroXI GAANNNNTTC 1 cut(s) 1152
MseI TTAA 7 cut(s) 311, 377, 414, 486, 981, 995, 1274
MslI CAYNNNNRTG 2 cut(s) 536, 711
MspA1I CMGCKG 3 cut(s) 528, 721, 1259
MspCI CTTAAG 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 307, 1346
MvaI CCWGG 2 cut(s) 307, 1346
MvnI CGCG 2 cut(s) 1536, 1572
MwoI GCNNNNNNNGC 4 cut(s) 85, 911, 920, 1091
NdeI CATATG 2 cut(s) 394, 607
NdeII GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
NlaIV GGNNCC 2 cut(s) 140, 857
NmuCI GTSAC 3 cut(s) 190, 594, 1495
NspI RCATGY 8 cut(s) 237, 351, 429, 663, 733, 1163, 1229, 1513
PaeI GCATGC 2 cut(s) 237, 351
PagI TCATGA 1 cut(s) 759
PciI ACATGT 3 cut(s) 659, 729, 1225
PdmI GAANNNNTTC 1 cut(s) 1152
PfeI GAWTC 2 cut(s) 1148, 1349
PflFI GACNNNGTC 1 cut(s) 786
PfoI TCCNGGA 1 cut(s) 1344
PkrI GCNGC 4 cut(s) 346, 530, 720, 1535
PpuMI RGGWCCY 1 cut(s) 1396
PscI ACATGT 3 cut(s) 659, 729, 1225
PshBI ATTAAT 1 cut(s) 414
PsiI TTATAA 1 cut(s) 819
Psp1406I AACGTT 1 cut(s) 1205
Psp5II RGGWCCY 1 cut(s) 1396
Psp6I CCWGG 2 cut(s) 305, 1344
PspGI CCWGG 2 cut(s) 305, 1344
PspN4I GGNNCC 2 cut(s) 140, 857
PspPI GGNCC 3 cut(s) 976, 1022, 1396
PspPPI RGGWCCY 1 cut(s) 1396
PsuI RGATCY 2 cut(s) 23, 1541
PsyI GACNNNGTC 1 cut(s) 786
PvuII CAGCTG 2 cut(s) 721, 1259
RsaI GTAC 9 cut(s) 74, 174, 201, 265, 658, 1058, 1188, 1233, 1316
RsaNI GTAC 9 cut(s) 73, 173, 200, 264, 657, 1057, 1187, 1232, 1315
RseI CAYNNNNRTG 2 cut(s) 536, 711
SaqAI TTAA 7 cut(s) 311, 377, 414, 486, 981, 995, 1274
SatI GCNGC 4 cut(s) 345, 529, 719, 1534
Sau3AI GATC 8 cut(s) 23, 129, 388, 768, 1248, 1299, 1541, 1573
Sau96I GGNCC 3 cut(s) 976, 1022, 1396
ScaI AGTACT 2 cut(s) 74, 1233
ScrFI CCNGG 2 cut(s) 307, 1346
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 3 cut(s) 932, 1094, 1364
SinI GGWCC 2 cut(s) 1022, 1396
SmiMI CAYNNNNRTG 2 cut(s) 536, 711
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
SpeI ACTAGT 1 cut(s) 1183
SphI GCATGC 2 cut(s) 237, 351
SsiI CCGC 5 cut(s) 351, 526, 1534, 1564, 1570
SspI AATATT 1 cut(s) 1340
SspMI CTAG 5 cut(s) 497, 626, 860, 956, 1184
StyD4I CCNGG 2 cut(s) 305, 1344
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 5 cut(s) 204, 340, 511, 1191, 1404
TaiI ACGT 1 cut(s) 1208
TaqI TCGA 1 cut(s) 1099
TatI WGTACW 5 cut(s) 72, 172, 199, 1186, 1231
TauI GCSGC 1 cut(s) 1536
TfiI GAWTC 2 cut(s) 1148, 1349
Tru1I TTAA 7 cut(s) 311, 377, 414, 486, 981, 995, 1274
Tru9I TTAA 7 cut(s) 311, 377, 414, 486, 981, 995, 1274
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 3 cut(s) 190, 594, 1495
TseI GCWGC 3 cut(s) 344, 528, 718
Tsp45I GTSAC 3 cut(s) 190, 594, 1495
TspDTI ATGAA 9 cut(s) 266, 532, 579, 748, 776, 1148, 1318, 1469, 1537
TspGWI ACGGA 1 cut(s) 1074
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 786
Vha464I CTTAAG 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 1022, 1396
VspI ATTAAT 1 cut(s) 414
XagI CCTNNNNNAGG 1 cut(s) 971
XapI RAATTY 3 cut(s) 105, 327, 1456
XceI RCATGY 8 cut(s) 237, 351, 429, 663, 733, 1163, 1229, 1513
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmaJI CCTAGG 1 cut(s) 625
XmnI GAANNNNTTC 1 cut(s) 1152
XspI CTAG 5 cut(s) 497, 626, 860, 956, 1184
ZrmI AGTACT 2 cut(s) 74, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.