Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005365.1

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Reverse (-)

43247 .. 47160

Gene Structure 3914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005365.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgtccaattctccgtcgtcgtctgaatccaaatcgccaagtgacgccagctcgtcggatttctctcgcactttcaagtacctattggctacccagttgtgttcaagaggaattccattcatagtcaatgctgtgatcctcagaaatttccttaaagttgaagactttgcgctatatggagtacagtttccgctatttgtgaattgcgtgttgtttctcagccgggaggggtttcggcgagcatgtctgcgacaggacatgaaaagcgatggtacttctacagaagaaaatatagcaaagatcatgaaatttgcgtggttggttccgccgtgtggaattattattactactgcagcgtctggttttgtcttttggtggaaaggcttgagcttttctgatccatatggacaagggatcttgattactggtcttatatttatggcgtttggcccgagttatgcttattctctcatcagattggtgtatggtcaaaaatggagtgatggggaagcatcaacagccctgggatattattgcttttatattattgttttggctgtgaatggaacttctgaagcatttgtacatgcagttgccaagaagaaccaacttctgtggtcaaatcttccatctgttctgataacaattatatatgtggtactgaatatcctgctggtaaactccgctggcgcggttggcttaattttggcaaattcattaaatatgattttgagaatattatactctggggcattcatcaagcattacttccaggattcttcctcattttctttttacaaatgcttacctgaaggatggaaggtcttgctgttttcaggaataaccactatcatttctgagagaatatttctagacaggaagaatttctgggcgacttttgttgttcattttaccattggggtcgcttgcttctgcacttcggcatttgtcatatatcgtcatgagagatcccttatcaacaaaatcattcccatcaacaggattttcccaagcatcaacaaaattgtccgcttccgtgatcactcagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

350

Amino Acids

39.3

Weight (kDa)

9.27

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	692
AciI	CCGC	5 cut(s)	191, 326, 684, 692, 1030
AclWI	GGATC	4 cut(s)	130, 392, 422, 963
AcsI	RAATTY	5 cut(s)	111, 145, 308, 712, 883
AcuI	CTGAAG	2 cut(s)	594, 831
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	5 cut(s)	80, 183, 274, 585, 660
AfiI	CCNNNNNNNGG	2 cut(s)	332, 999
AgsI	TTSAA	3 cut(s)	76, 105, 161
AjnI	CCWGG	2 cut(s)	522, 771
AluBI	AGCT	2 cut(s)	51, 390
AluI	AGCT	2 cut(s)	51, 390
AlwI	GGATC	4 cut(s)	130, 392, 422, 963
AlwNI	CAGNNNCTG	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	5 cut(s)	111, 145, 308, 712, 883
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	2 cut(s)	172, 692
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	451
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	5 cut(s)	263, 497, 637, 810, 1001
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	2 cut(s)	524, 773
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	872
BfmI	CTRYAG	2 cut(s)	279, 351
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	224, 524, 773
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	224, 524, 773
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	521, 1023
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	522, 523
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 999
Bse1I	ACTGG	2 cut(s)	94, 430
BseBI	CCWGG	2 cut(s)	524, 773
BseDI	CCNNGG	2 cut(s)	522, 523
BseGI	GGATG	1 cut(s)	821
BseLI	CCNNNNNNNGG	2 cut(s)	332, 999
BseMII	CTCAG	3 cut(s)	154, 232, 849
BseNI	ACTGG	2 cut(s)	94, 430
BseXI	GCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	919
Bsh1236I	CGCG	1 cut(s)	692
BshFI	GGCC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	332, 999
BsmI	GAATGC	1 cut(s)	752
BsnI	GGCC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	583
Bsp143I	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
BspACI	CCGC	5 cut(s)	191, 326, 684, 692, 1030
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	3 cut(s)	153, 231, 850
BspFNI	CGCG	1 cut(s)	692
BspHI	TCATGA	2 cut(s)	303, 961
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	4 cut(s)	130, 392, 422, 963
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	94, 430
BssECI	CCNNGG	2 cut(s)	522, 523
BssMI	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	524, 773
Bst4CI	ACNGT	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	583
BstC8I	GCNNGC	4 cut(s)	49, 240, 688, 928
BstDEI	CTNAG	4 cut(s)	140, 218, 858, 1045
BstF5I	GGATG	1 cut(s)	821
BstFNI	CGCG	1 cut(s)	692
BstHHI	GCGC	2 cut(s)	172, 692
BstKTI	GATC	6 cut(s)	138, 303, 400, 417, 971, 1042
BstMBI	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 696
BstNI	CCWGG	2 cut(s)	524, 773
BstNSI	RCATGY	2 cut(s)	246, 590
BstSCI	CCNGG	3 cut(s)	222, 522, 771
BstSFI	CTRYAG	2 cut(s)	279, 351
BstUI	CGCG	1 cut(s)	692
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	414, 968
BstYI	RGATCY	2 cut(s)	414, 968
BsuRI	GGCC	1 cut(s)	450
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	821
Cac8I	GCNNGC	4 cut(s)	49, 240, 688, 928
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	2 cut(s)	303, 961
CfoI	GCGC	2 cut(s)	172, 692
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	2 cut(s)	53, 345
Csp6I	GTAC	5 cut(s)	79, 182, 273, 584, 659
CspCI	CAANNNNNGTGG	2 cut(s)	596, 631
CviAII	CATG	5 cut(s)	243, 259, 304, 587, 962
CviJI	RGCY	9 cut(s)	51, 89, 222, 384, 390, 450, 521, 557, 699
CviKI_1	RGCY	9 cut(s)	51, 89, 222, 384, 390, 450, 521, 557, 699
CviQI	GTAC	5 cut(s)	79, 182, 273, 584, 659
DdeI	CTNAG	4 cut(s)	140, 218, 858, 1045
DpnI	GATC	6 cut(s)	137, 302, 399, 416, 970, 1041
DpnII	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
EciI	GGCGGA	1 cut(s)	315
Eco57I	CTGAAG	2 cut(s)	594, 831
Eco88I	CYCGRG	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	522, 771
FaeI	CATG	5 cut(s)	246, 262, 307, 590, 965
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FatI	CATG	5 cut(s)	242, 258, 303, 586, 961
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	1039
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	828
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	872
GlaI	GCGC	2 cut(s)	171, 691
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	2 cut(s)	53, 345
HhaI	GCGC	2 cut(s)	172, 692
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	246, 262, 307, 590, 965
Hin6I	GCGC	2 cut(s)	170, 690
HinP1I	GCGC	2 cut(s)	170, 690
HinfI	GANTC	2 cut(s)	26, 776
HpaII	CCGG	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	9 cut(s)	25, 58, 143, 397, 476, 574, 639, 859, 1048
Hpy188III	TCNNGA	6 cut(s)	105, 304, 418, 837, 872, 962
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	3 cut(s)	19, 22, 58
HpyAV	CCTTC	2 cut(s)	806, 814
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	353, 590, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 696
HpyF3I	CTNAG	4 cut(s)	140, 218, 858, 1045
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	246, 262, 307, 590, 965
HspAI	GCGC	2 cut(s)	170, 690
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	521, 1023
MaeI	CTAG	1 cut(s)	872
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	6 cut(s)	137, 302, 399, 416, 970, 1041
MboI	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
MboII	GAAGA	6 cut(s)	173, 296, 613, 617, 771, 892
MflI	RGATCY	2 cut(s)	414, 968
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	101, 149, 220, 793
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	3 cut(s)	153, 701, 719
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	3 cut(s)	224, 524, 773
Mva1269I	GAATGC	1 cut(s)	752
MvaI	CCWGG	2 cut(s)	524, 773
MvnI	CGCG	1 cut(s)	692
MwoI	GCNNNNNNNGC	2 cut(s)	518, 696
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
NlaIII	CATG	5 cut(s)	246, 262, 307, 590, 965
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	2 cut(s)	246, 590
PagI	TCATGA	2 cut(s)	303, 961
PasI	CCCWGGG	1 cut(s)	523
PctI	GAATGC	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	2 cut(s)	26, 776
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	522, 771
PspGI	CCWGG	2 cut(s)	522, 771
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	414, 968
RsaI	GTAC	5 cut(s)	80, 183, 274, 585, 660
RsaNI	GTAC	5 cut(s)	79, 182, 273, 584, 659
SaqAI	TTAA	3 cut(s)	153, 701, 719
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	6 cut(s)	135, 300, 397, 414, 968, 1039
Sau96I	GGNCC	1 cut(s)	449
ScrFI	CCNGG	3 cut(s)	224, 524, 773
SetI	ASST	5 cut(s)	53, 84, 392, 811, 825
SfaNI	GCATC	2 cut(s)	521, 1023
SfcI	CTRYAG	2 cut(s)	279, 351
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SsiI	CCGC	5 cut(s)	191, 326, 684, 692, 1030
SspI	AATATT	2 cut(s)	738, 867
SspMI	CTAG	1 cut(s)	872
StyD4I	CCNGG	3 cut(s)	222, 522, 771
TaaI	ACNGT	1 cut(s)	186
TatI	WGTACW	2 cut(s)	181, 583
TfiI	GAWTC	2 cut(s)	26, 776
Tru1I	TTAA	3 cut(s)	153, 701, 719
Tru9I	TTAA	3 cut(s)	153, 701, 719
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	6 cut(s)	109, 275, 320, 705, 745, 896
TspGWI	ACGGA	1 cut(s)	1025
XapI	RAATTY	5 cut(s)	111, 145, 308, 712, 883
XbaI	TCTAGA	1 cut(s)	871
XceI	RCATGY	2 cut(s)	246, 590
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.