Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Reverse (-)

83818549 .. 83824648

Gene Structure 6100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG492100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGTCCAATTCTCCGTCGTCGTCTGAATCCAAATCGCCAAGTGACGCCAGCTCGTCGGATTTCTCTCGCACTTTCAAGTACCTATTGGCTACCCAGTTGTGTTCAAGAGGAATTCCATTCATAGTCAATGCTGTGATCCTCAGAAATTTCCTTAAAGTTGAAGACTTTGCGCTATATGGAGTACAGTTTCCGCTATTTGTGAATTGCGTGTTGTTTCTCAGCCGGGAGGGGTTTCGGCGAGCATGTCTGCGACAGGACATGAAAAGCGATGGTACTTCTACAGAAGAAAATATAGCAAAGATCATGAAATTTGCGTGGTTGGTTCCGCCGTGTGGAATTATTATTACTACTTCAGCGTCTGGTTTTGTCTTTTGGTGGAAAGGCTTGAGCTTTTCTGATCCATATGGACAAGGGATCTTGATTACTGGTGGTGCGTGTATATTAGAACTATTGGCAGAGCCCTTGTATATCCTATCTCAAAACTTGCTGCTGCTTAAATTAAGGCTGGCAGTTGAAACTGCTGCTACTTTTTTTCGCTGCATAACAACAGCCATTCTCTTTGGCATGCGAGCTGACATGGAAAAAGAGATTATATTTGCATTGTCACAGACTGCTTATGGACTGTGCTTGTTCTCAGGGTATTGGGTCTACTTTCTTCGTTTTCGTCCATATAGAAGTTCTGCTCTTTTCCCCTTCAGAGCAAAGAATAAGAAGAATTATGATGGGGAGCTGTTAAAGATGTGTGAGTTGTTTGCTTTGCAATCCTGTGTGAAATTGATCCTTCAGGAAGGACAAAATTTTGTTCTTTTACAGTGGGCAACATATTATAACCAAGCTGTATATGGATTTGTGGACAATTTAGGGAGCCTGGTGGTGAGGATGGTGTTTCTTCCTTTTGAAGAAAGTACCTATGCTACATTTGCAAGGTCTGCATCAGGAAAAGACCCAGATAAGGACAAGAGGTTGGGAGGTAGCCTTACAGAAGCCCTTAAGCTGGTTTTGTTAATAGGTCTTATATTTATGGCGTTTGGCCCGAGTTATGCTTATTCTCTCATCAGATTGGTGTATGGTCAAAAATGGAGTGATGGGGAAGCATCAACAGCCCTGGGATATTATTGCTTTTATATTATTGTTTTGGCTGTGAATGGAACTTCTGAAGCATTTGTACATGCAGTTGCCAAGAAGAACCAACTTCTGTGGTCAAATCTTCCATCTGTTCTGATAACAATTATATATGTGGTACTGAATATCCTGCTGGTAAACTCCGCTGGCGCAGTTGGCTTAATTTTGGCAAATTCATTAAATATGATTTTGAGAATATTATACTCTGGGGCATTCATCAAGCATTACTTCCAGGATTCTTCCTCATTTTCTTTTTACAAATGCTTACCTGAAGGATGGAAGGTCTTGCTGTTTTCAGGAATAACTACTATCATTTCTGAGAGAATATTTCTAGACAGGAAGAATTTCTGGGCGACTTTTGTTGTTCATTTTACCATTGGGGTCGCTTGCTTCTGCACTTCGGCATTTGTCATATATCGTCATGAGAGATCCCTTATCAACAAAATCATTCCCATCAACAGGATTTTCCCAAGCATCAACAAAATTGTCCGCTTCCGTGATCACTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

544

Amino Acids

61.29

Weight (kDa)

9.15

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rft-1	PF04506	25 - 524	5.3e-131	Rft protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	648
AciI	CCGC	4 cut(s)	191, 326, 1266, 1612
AclWI	GGATC	5 cut(s)	130, 392, 422, 772, 1545
AcsI	RAATTY	6 cut(s)	111, 145, 308, 796, 1294, 1465
AcuI	CTGAAG	5 cut(s)	336, 679, 767, 1176, 1413
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	6 cut(s)	80, 183, 274, 907, 1167, 1242
AfiI	CCNNNNNNNGG	4 cut(s)	332, 952, 994, 1581
AflII	CTTAAG	1 cut(s)	989
AgsI	TTSAA	5 cut(s)	76, 105, 161, 515, 899
AjnI	CCWGG	3 cut(s)	867, 1104, 1353
AluBI	AGCT	6 cut(s)	51, 390, 572, 730, 836, 994
AluI	AGCT	6 cut(s)	51, 390, 572, 730, 836, 994
AlwI	GGATC	5 cut(s)	130, 392, 422, 772, 1545
AlwNI	CAGNNNCTG	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	1033
AoxI	GGCC	1 cut(s)	1030
ApeKI	GCWGC	4 cut(s)	487, 490, 521, 537
ApoI	RAATTY	6 cut(s)	111, 145, 308, 796, 1294, 1465
Asp700I	GAANNNNTTC	1 cut(s)	1466
AspLEI	GCGC	2 cut(s)	172, 1274
AspS9I	GGNCC	1 cut(s)	1031
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	886
AvaI	CYCGRG	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	1149, 1181
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	4 cut(s)	474, 477, 508, 524
BccI	CCATC	7 cut(s)	263, 716, 874, 1079, 1219, 1392, 1583
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	3 cut(s)	869, 1106, 1355
BclI	TGATCA	1 cut(s)	1621
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	1454
BfmI	CTRYAG	1 cut(s)	279
BfrI	CTTAAG	1 cut(s)	989
BisI	GCNGC	4 cut(s)	488, 491, 522, 538
BlsI	GCNGC	4 cut(s)	489, 492, 523, 539
Bme1390I	CCNGG	4 cut(s)	224, 869, 1106, 1355
BmeT110I	CYCGRG	1 cut(s)	1033
BmgT120I	GGNCC	1 cut(s)	1031
BmiI	GGNNCC	2 cut(s)	324, 866
BmrFI	CCNGG	4 cut(s)	224, 869, 1106, 1355
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	3 cut(s)	941, 1103, 1605
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	1104, 1105
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 952, 994, 1581
Bse1I	ACTGG	2 cut(s)	94, 430
BseBI	CCWGG	3 cut(s)	869, 1106, 1355
BseDI	CCNNGG	2 cut(s)	1104, 1105
BseGI	GGATG	2 cut(s)	885, 1403
BseLI	CCNNNNNNNGG	4 cut(s)	332, 952, 994, 1581
BseMII	CTCAG	4 cut(s)	154, 232, 648, 1431
BseNI	ACTGG	2 cut(s)	94, 430
BseXI	GCAGC	4 cut(s)	474, 477, 508, 524
BsgI	GTGCAG	1 cut(s)	1501
BshFI	GGCC	1 cut(s)	1032
BsiHKCI	CYCGRG	1 cut(s)	1033
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	4 cut(s)	332, 952, 994, 1581
BsmI	GAATGC	1 cut(s)	1334
BsnI	GGCC	1 cut(s)	1032
BsoBI	CYCGRG	1 cut(s)	1033
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	1165
Bsp143I	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
BspACI	CCGC	4 cut(s)	191, 326, 1266, 1612
BspANI	GGCC	1 cut(s)	1032
BspCNI	CTCAG	4 cut(s)	153, 231, 647, 1432
BspHI	TCATGA	2 cut(s)	303, 1543
BspLI	GGNNCC	2 cut(s)	324, 866
BspPI	GGATC	5 cut(s)	130, 392, 422, 772, 1545
BspTI	CTTAAG	1 cut(s)	989
BsrGI	TGTACA	1 cut(s)	1165
BsrI	ACTGG	2 cut(s)	94, 430
BssECI	CCNNGG	2 cut(s)	1104, 1105
BssMI	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	869, 1106, 1355
Bst4CI	ACNGT	3 cut(s)	186, 624, 813
BstACI	GRCGYC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	989
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstAUI	TGTACA	1 cut(s)	1165
BstC8I	GCNNGC	7 cut(s)	49, 240, 507, 566, 570, 1270, 1510
BstDEI	CTNAG	5 cut(s)	140, 218, 634, 1440, 1627
BstF5I	GGATG	2 cut(s)	885, 1403
BstHHI	GCGC	2 cut(s)	172, 1274
BstKTI	GATC	7 cut(s)	138, 303, 400, 417, 780, 1553, 1624
BstMBI	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
BstMWI	GCNNNNNNNGC	4 cut(s)	920, 929, 1100, 1278
BstNI	CCWGG	3 cut(s)	869, 1106, 1355
BstNSI	RCATGY	3 cut(s)	246, 568, 1172
BstSCI	CCNGG	4 cut(s)	222, 867, 1104, 1353
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	4 cut(s)	474, 477, 508, 524
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	414, 1550
BstYI	RGATCY	2 cut(s)	414, 1550
BsuRI	GGCC	1 cut(s)	1032
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	885, 1403
BtsIMutI	CAGTG	1 cut(s)	818
Cac8I	GCNNGC	7 cut(s)	49, 240, 507, 566, 570, 1270, 1510
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	2 cut(s)	303, 1543
CfoI	GCGC	2 cut(s)	172, 1274
Cfr13I	GGNCC	1 cut(s)	1031
CseI	GACGC	2 cut(s)	53, 345
Csp6I	GTAC	6 cut(s)	79, 182, 273, 906, 1166, 1241
CspCI	CAANNNNNGTGG	2 cut(s)	1178, 1213
CviAII	CATG	7 cut(s)	243, 259, 304, 565, 577, 1169, 1544
CviQI	GTAC	6 cut(s)	79, 182, 273, 906, 1166, 1241
DdeI	CTNAG	5 cut(s)	140, 218, 634, 1440, 1627
DpnI	GATC	7 cut(s)	137, 302, 399, 416, 779, 1552, 1623
DpnII	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
EciI	GGCGGA	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	462
Eco57I	CTGAAG	5 cut(s)	336, 679, 767, 1176, 1413
Eco88I	CYCGRG	1 cut(s)	1033
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	3 cut(s)	867, 1104, 1353
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	7 cut(s)	246, 262, 307, 568, 580, 1172, 1547
FalI	AAGNNNNNCTT	2 cut(s)	1334, 1366
FatI	CATG	7 cut(s)	242, 258, 303, 564, 576, 1168, 1543
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	1621
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	488, 491, 522, 538
FokI	GGATG	2 cut(s)	892, 1410
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	4 cut(s)	488, 491, 522, 538
FspBI	CTAG	1 cut(s)	1454
GlaI	GCGC	2 cut(s)	171, 1273
GluI	GCNGC	4 cut(s)	488, 491, 522, 538
HaeIII	GGCC	1 cut(s)	1032
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	2 cut(s)	53, 345
HhaI	GCGC	2 cut(s)	172, 1274
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	7 cut(s)	246, 262, 307, 568, 580, 1172, 1547
Hin6I	GCGC	2 cut(s)	170, 1272
HinP1I	GCGC	2 cut(s)	170, 1272
HinfI	GANTC	2 cut(s)	26, 1358
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	886
Hpy166II	GTNNAC	3 cut(s)	649, 853, 1261
Hpy188III	TCNNGA	8 cut(s)	105, 304, 418, 785, 936, 1419, 1454, 1544
Hpy8I	GTNNAC	3 cut(s)	649, 853, 1261
Hpy99I	CGWCG	3 cut(s)	19, 22, 58
HpyAV	CCTTC	5 cut(s)	703, 782, 791, 1388, 1396
HpyCH4III	ACNGT	3 cut(s)	186, 624, 813
HpyCH4V	TGCA	7 cut(s)	540, 599, 760, 923, 932, 1172, 1518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	920, 929, 1100, 1278
HpyF3I	CTNAG	5 cut(s)	140, 218, 634, 1440, 1627
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	7 cut(s)	246, 262, 307, 568, 580, 1172, 1547
HspAI	GCGC	2 cut(s)	170, 1272
Ksp22I	TGATCA	1 cut(s)	1621
Kzo9I	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
LmnI	GCTCC	2 cut(s)	727, 864
Lsp1109I	GCAGC	4 cut(s)	474, 477, 508, 524
LweI	GCATC	3 cut(s)	941, 1103, 1605
MaeI	CTAG	1 cut(s)	1454
MaeIII	GTNAC	2 cut(s)	41, 603
MalI	GATC	7 cut(s)	137, 302, 399, 416, 779, 1552, 1623
MboI	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
MflI	RGATCY	2 cut(s)	414, 1550
MhlI	GDGCHC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	101, 149, 220, 870, 954, 962, 1375
MroXI	GAANNNNTTC	1 cut(s)	1466
MseI	TTAA	8 cut(s)	153, 495, 500, 734, 990, 1004, 1283, 1301
MspA1I	CMGCKG	1 cut(s)	1268
MspCI	CTTAAG	1 cut(s)	989
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	4 cut(s)	224, 869, 1106, 1355
Mva1269I	GAATGC	1 cut(s)	1334
MvaI	CCWGG	3 cut(s)	869, 1106, 1355
MwoI	GCNNNNNNNGC	4 cut(s)	920, 929, 1100, 1278
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
NlaIII	CATG	7 cut(s)	246, 262, 307, 568, 580, 1172, 1547
NlaIV	GGNNCC	2 cut(s)	324, 866
NmuCI	GTSAC	2 cut(s)	41, 603
NspI	RCATGY	3 cut(s)	246, 568, 1172
PaeI	GCATGC	1 cut(s)	568
PagI	TCATGA	2 cut(s)	303, 1543
PasI	CCCWGGG	1 cut(s)	1105
PctI	GAATGC	1 cut(s)	1334
PdmI	GAANNNNTTC	1 cut(s)	1466
PfeI	GAWTC	2 cut(s)	26, 1358
PfoI	TCCNGGA	1 cut(s)	1353
PkrI	GCNGC	4 cut(s)	489, 492, 523, 539
PsiI	TTATAA	1 cut(s)	828
Psp6I	CCWGG	3 cut(s)	867, 1104, 1353
PspGI	CCWGG	3 cut(s)	867, 1104, 1353
PspN4I	GGNNCC	2 cut(s)	324, 866
PspPI	GGNCC	1 cut(s)	1031
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	414, 1550
RsaI	GTAC	6 cut(s)	80, 183, 274, 907, 1167, 1242
RsaNI	GTAC	6 cut(s)	79, 182, 273, 906, 1166, 1241
SaqAI	TTAA	8 cut(s)	153, 495, 500, 734, 990, 1004, 1283, 1301
SatI	GCNGC	4 cut(s)	488, 491, 522, 538
Sau3AI	GATC	7 cut(s)	135, 300, 397, 414, 777, 1550, 1621
Sau96I	GGNCC	1 cut(s)	1031
ScrFI	CCNGG	4 cut(s)	224, 869, 1106, 1355
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	3 cut(s)	941, 1103, 1605
SfcI	CTRYAG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	385, 989
SmoI	CTYRAG	2 cut(s)	385, 989
SphI	GCATGC	1 cut(s)	568
SsiI	CCGC	4 cut(s)	191, 326, 1266, 1612
SspI	AATATT	2 cut(s)	1320, 1449
SspMI	CTAG	1 cut(s)	1454
StyD4I	CCNGG	4 cut(s)	222, 867, 1104, 1353
TaaI	ACNGT	3 cut(s)	186, 624, 813
TatI	WGTACW	2 cut(s)	181, 1165
TfiI	GAWTC	2 cut(s)	26, 1358
Tru1I	TTAA	8 cut(s)	153, 495, 500, 734, 990, 1004, 1283, 1301
Tru9I	TTAA	8 cut(s)	153, 495, 500, 734, 990, 1004, 1283, 1301
TscAI	CASTG	1 cut(s)	818
TseFI	GTSAC	2 cut(s)	41, 603
TseI	GCWGC	4 cut(s)	487, 490, 521, 537
Tsp45I	GTSAC	2 cut(s)	41, 603
TspDTI	ATGAA	6 cut(s)	109, 275, 320, 1287, 1327, 1478
TspGWI	ACGGA	1 cut(s)	1607
TspRI	CASTG	1 cut(s)	818
Vha464I	CTTAAG	1 cut(s)	989
XapI	RAATTY	6 cut(s)	111, 145, 308, 796, 1294, 1465
XbaI	TCTAGA	1 cut(s)	1453
XceI	RCATGY	3 cut(s)	246, 568, 1172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XmiI	GTMKAC	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	1466
XspI	CTAG	1 cut(s)	1454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.