Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003945.1

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1546

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003945.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgtccaattctccgtcgtcgtctgaatccaaatcgccaagtgacgccagctcgtcggatttctctcgcactttcaagtacctattggctacccagttgtgttcaagaggaattccattcatagtcaatgctgtgatcctcagaaatttccttaaagttgaagactttgcgctttatggagtacagtttccgctatttgtgaattgcgtgttgtttctcagccgggaggggtttcggcgagcatgtctgcgacaggacatgaaaagcgatggtacttctacagaagaaaatatagcaaagatcatgaaatttgcgtggttggttccgccgtgtggaattattattactactgcagcgtctggttttgtcttttggtggaaaggcttgagcttttctgatccatatggacaagggatcttgattactggcggtgcgtgtatattagaactattggcagagcccttgtatatcctatctcaaaacttgttgctgcttaaattaaggctggcagttgaaactgccgctactttttttcgctgcataacaacagccattctctttggcatgcgagctgacatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

193

Amino Acids

21.37

Weight (kDa)

8.56

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	191, 326, 429, 522
AclWI	GGATC	3 cut(s)	130, 392, 422
AcsI	RAATTY	3 cut(s)	111, 145, 308
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	3 cut(s)	80, 183, 274
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	76, 105, 161, 515
AluBI	AGCT	3 cut(s)	51, 390, 572
AluI	AGCT	3 cut(s)	51, 390, 572
AlwI	GGATC	3 cut(s)	130, 392, 422
AlwNI	CAGNNNCTG	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	353, 490, 537
ApoI	RAATTY	3 cut(s)	111, 145, 308
AspLEI	GCGC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	365, 477, 524
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	224
BfmI	CTRYAG	2 cut(s)	279, 351
BisI	GCNGC	4 cut(s)	354, 491, 522, 538
BlsI	GCNGC	4 cut(s)	355, 492, 523, 539
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	94, 430
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	154, 232
BseNI	ACTGG	2 cut(s)	94, 430
BseXI	GCAGC	3 cut(s)	365, 477, 524
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	135, 300, 397, 414
BspACI	CCGC	4 cut(s)	191, 326, 429, 522
BspCNI	CTCAG	2 cut(s)	153, 231
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	3 cut(s)	130, 392, 422
BsrI	ACTGG	2 cut(s)	94, 430
BssMI	GATC	4 cut(s)	135, 300, 397, 414
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	5 cut(s)	49, 240, 507, 566, 570
BstDEI	CTNAG	2 cut(s)	140, 218
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	4 cut(s)	138, 303, 400, 417
BstMBI	GATC	4 cut(s)	135, 300, 397, 414
BstNSI	RCATGY	2 cut(s)	246, 568
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	2 cut(s)	279, 351
BstV1I	GCAGC	3 cut(s)	365, 477, 524
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	282
Cac8I	GCNNGC	5 cut(s)	49, 240, 507, 566, 570
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	172
CseI	GACGC	2 cut(s)	53, 345
Csp6I	GTAC	3 cut(s)	79, 182, 273
CviAII	CATG	5 cut(s)	243, 259, 304, 565, 577
CviJI	RGCY	9 cut(s)	51, 89, 222, 384, 390, 460, 505, 551, 572
CviKI_1	RGCY	9 cut(s)	51, 89, 222, 384, 390, 460, 505, 551, 572
CviQI	GTAC	3 cut(s)	79, 182, 273
DdeI	CTNAG	2 cut(s)	140, 218
DpnI	GATC	4 cut(s)	137, 302, 399, 416
DpnII	GATC	4 cut(s)	135, 300, 397, 414
EciI	GGCGGA	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	4 cut(s)	246, 262, 307, 568
FatI	CATG	4 cut(s)	242, 258, 303, 564
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	354, 491, 522, 538
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	4 cut(s)	354, 491, 522, 538
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	354, 491, 522, 538
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	2 cut(s)	53, 345
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	4 cut(s)	246, 262, 307, 568
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	25, 58, 143, 397
Hpy188III	TCNNGA	3 cut(s)	105, 304, 418
Hpy99I	CGWCG	3 cut(s)	19, 22, 58
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	353, 540
HpyF3I	CTNAG	2 cut(s)	140, 218
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	246, 262, 307, 568
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	135, 300, 397, 414
LpnPI	CCDG	7 cut(s)	61, 107, 236, 239, 345, 411, 491
Lsp1109I	GCAGC	3 cut(s)	365, 477, 524
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	137, 302, 399, 416
MboI	GATC	4 cut(s)	135, 300, 397, 414
MboII	GAAGA	2 cut(s)	173, 296
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	7 cut(s)	7, 111, 145, 202, 308, 336, 497
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	101, 149, 220
MseI	TTAA	3 cut(s)	153, 495, 500
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	224
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	4 cut(s)	135, 300, 397, 414
NlaIII	CATG	4 cut(s)	246, 262, 307, 568
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	2 cut(s)	246, 568
PaeI	GCATGC	1 cut(s)	568
PagI	TCATGA	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	4 cut(s)	355, 492, 523, 539
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	3 cut(s)	80, 183, 274
RsaNI	GTAC	3 cut(s)	79, 182, 273
SaqAI	TTAA	3 cut(s)	153, 495, 500
SatI	GCNGC	4 cut(s)	354, 491, 522, 538
Sau3AI	GATC	4 cut(s)	135, 300, 397, 414
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	4 cut(s)	53, 84, 392, 574
SfcI	CTRYAG	2 cut(s)	279, 351
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	7 cut(s)	7, 111, 145, 202, 308, 336, 497
SsiI	CCGC	4 cut(s)	191, 326, 429, 522
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	186
TasI	AATT	7 cut(s)	7, 111, 145, 202, 308, 336, 497
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	153, 495, 500
Tru9I	TTAA	3 cut(s)	153, 495, 500
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	3 cut(s)	353, 490, 537
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	109, 275, 320
XapI	RAATTY	3 cut(s)	111, 145, 308
XceI	RCATGY	2 cut(s)	246, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.