Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Forward (+)

8749483 .. 8755541

Gene Structure 6059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGTCCAATTCTCCGTCGTTGTCTGAATCCAAATCGCCAAGTGACGCCAGCTCGTCGGATTTCTCTCGCACTTTCAAGTACCTATTGGGTCAGTTTCTCCTTCACTCTCCTTCTCTGCTTGTTTTCTCAGCTTTACAGAAGATTACGCAAATTGGGATTGTTTTGTTGAAAGTAAGTTCTGCTTTTCTGCAGCTATATGGAGTACAGTTTCCGCTATTTGTGAATTGCGTGTTGTTTCTCAGCCGGGAGGGGTTTCGGCGAGCATGTCTGCGACAGGACATGAAGCGCGATGGTACTTCAACAGAAGAAAATATAGCAAAGATCATGAAATTTGCATGGTTGGTTCCGCCGTGTGGAATTATTATTACTACTGCAGCGTCTGGTTTTGTCTTTTGGTGGAAAGGCTTGAGCTTTTCTGATCCATATGGACAAGGGATCTTGATTACTGGATTCCAATCTGAAAGGGGAGGAATTAGTAATGAGCAAGGGTATTGGGTCTACTTTCTTCGTTTTCGTCCATATAGAAGTTCTGCTCTTTTCCCCTTCAGAGCAAAGAATAAGAAGAATTATGATGGGGAGCTGTTAAAGATGTGTGAGTTGTTTGCTTTGCAATCCTGTGTGAAATTGATCCTTCAGGAAGGACAAAATTTTGTTCTTTTACACTGGGCAACATATTATAACCAAGCTGTATATGGATTTGTGGACAATTTAGGGAGCCTCGTGGTGAGGATGGTGTTTCTTCCTTTTGAAGAAAGTACCTATGCTACATTTGCAAGGTCTGCATCAGGAAAAGACCCAGATAAAGCCAAGAGGTTGGGAAGTAGCCTTACAGAGGCCCTTAAGCTGGTTTTGTTAATAGGTCTTATATTTATGGCGTTTGGCCCGAGTTATGCTTATTCTCTCATCAGATTGGTGTATGGTCAAAAATGGAGTGATGGGGAAGCATCAACAGCCCTGGGATATTATTGCTTTTATATTATTGTTTTGGCTATGAATGGAACTTCTGAAGCATTTGTACATGCAGTTGCCAAGAAGAACCAACTCCTGTGGTCAAATCTTCCATCTGTTCTGATAACAATTATATATGTACTACTGAATATCCTGCTGGACTCTTCCTCATTTTCTTTTTACAAATGCTTACCTGAAGGATGGAAGGTCTTGCTGTTTTCAGGAATAACTACAATCATTTCTGAGAGAATATTTCTAGACAGGAAGAATTTCTGGGCGACTTTTGTTGTTCATTTTACCATTGGGGTCGCTTGCTTCTGCACTTCGGCATTTGTCATATATCGTCATGAGAGACCCCTTATCAACAAAATCATTCCCATCAACAGGATTTTCCCAAGCATCAACAAAATTGTCCGCTTCCGTGATCACTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

461

Amino Acids

52.2

Weight (kDa)

9.37

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rft-1	PF04506	54 - 137	1.9e-14	Rft protein
Rft-1	PF04506	164 - 370	4.8e-58	Rft protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	212, 347, 1363
AclWI	GGATC	3 cut(s)	413, 443, 622
AcsI	RAATTY	3 cut(s)	329, 646, 1216
AcuI	CTGAAG	4 cut(s)	529, 617, 1026, 1164
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	6 cut(s)	80, 204, 295, 757, 1017, 1089
AfiI	CCNNNNNNNGG	4 cut(s)	353, 832, 844, 1332
AflII	CTTAAG	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	76, 169, 300, 749
AjnI	CCWGG	1 cut(s)	954
AluBI	AGCT	7 cut(s)	51, 131, 193, 411, 580, 686, 844
AluI	AGCT	7 cut(s)	51, 131, 193, 411, 580, 686, 844
Alw26I	GTCTC	1 cut(s)	1294
AlwI	GGATC	3 cut(s)	413, 443, 622
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	883
AoxI	GGCC	2 cut(s)	834, 880
ApeKI	GCWGC	2 cut(s)	190, 374
ApoI	RAATTY	3 cut(s)	329, 646, 1216
Asp700I	GAANNNNTTC	1 cut(s)	1217
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	835, 881
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	736
AvaI	CYCGRG	1 cut(s)	883
BarI	GAAGNNNNNNTAC	4 cut(s)	811, 843, 999, 1031
BauI	CACGAG	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	202, 386
BccI	CCATC	7 cut(s)	284, 566, 724, 929, 1069, 1143, 1334
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	956
BclI	TGATCA	1 cut(s)	1372
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	1294
BfaI	CTAG	1 cut(s)	1205
BfmI	CTRYAG	2 cut(s)	188, 372
BfrI	CTTAAG	1 cut(s)	839
BisI	GCNGC	2 cut(s)	191, 375
BlsI	GCNGC	2 cut(s)	192, 376
Bme1390I	CCNGG	2 cut(s)	245, 956
BmeT110I	CYCGRG	1 cut(s)	883
BmgT120I	GGNCC	2 cut(s)	835, 881
BmiI	GGNNCC	2 cut(s)	345, 716
BmrFI	CCNGG	2 cut(s)	245, 956
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	3 cut(s)	791, 953, 1356
BmuI	ACTGGG	1 cut(s)	673
BpuEI	CTTGAG	1 cut(s)	427
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	1294
BsaJI	CCNNGG	2 cut(s)	954, 955
Bsc4I	CCNNNNNNNGG	4 cut(s)	353, 832, 844, 1332
Bse1I	ACTGG	2 cut(s)	451, 668
Bse8I	GATNNNNATC	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	956
BseDI	CCNNGG	2 cut(s)	954, 955
BseGI	GGATG	2 cut(s)	735, 1154
BseJI	GATNNNNATC	1 cut(s)	454
BseLI	CCNNNNNNNGG	4 cut(s)	353, 832, 844, 1332
BseMII	CTCAG	3 cut(s)	141, 253, 1182
BseNI	ACTGG	2 cut(s)	451, 668
BseXI	GCAGC	2 cut(s)	202, 386
BsgI	GTGCAG	1 cut(s)	1252
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	836, 882
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	4 cut(s)	353, 832, 844, 1332
BsmAI	GTCTC	1 cut(s)	1294
BsnI	GGCC	2 cut(s)	836, 882
Bso31I	GGTCTC	1 cut(s)	1294
BsoBI	CYCGRG	1 cut(s)	883
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	5 cut(s)	321, 418, 435, 627, 1372
BspACI	CCGC	3 cut(s)	212, 347, 1363
BspANI	GGCC	2 cut(s)	836, 882
BspCNI	CTCAG	3 cut(s)	140, 252, 1183
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	2 cut(s)	324, 1294
BspLI	GGNNCC	2 cut(s)	345, 716
BspMAI	CTGCAG	2 cut(s)	192, 376
BspPI	GGATC	3 cut(s)	413, 443, 622
BspTI	CTTAAG	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	1294
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	2 cut(s)	451, 668
BssECI	CCNNGG	2 cut(s)	954, 955
BssMI	GATC	5 cut(s)	321, 418, 435, 627, 1372
BssNI	GRCGYC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	719
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	1117
BstACI	GRCGYC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	839
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	49, 261, 1261
BstDEI	CTNAG	4 cut(s)	127, 239, 1191, 1378
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	2 cut(s)	735, 1154
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	5 cut(s)	324, 421, 438, 630, 1375
BstMAI	GTCTC	1 cut(s)	1294
BstMBI	GATC	5 cut(s)	321, 418, 435, 627, 1372
BstMWI	GCNNNNNNNGC	3 cut(s)	770, 779, 950
BstNI	CCWGG	1 cut(s)	956
BstNSI	RCATGY	2 cut(s)	267, 1022
BstSCI	CCNGG	2 cut(s)	243, 954
BstSFI	CTRYAG	2 cut(s)	188, 372
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	202, 386
BstX2I	RGATCY	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	836, 882
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	735, 1154
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	49, 261, 1261
CaiI	CAGNNNCTG	1 cut(s)	380
CciI	TCATGA	2 cut(s)	324, 1294
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	835, 881
CseI	GACGC	2 cut(s)	53, 366
Csp6I	GTAC	6 cut(s)	79, 203, 294, 756, 1016, 1088
CspCI	CAANNNNNGTGG	2 cut(s)	1028, 1063
CviAII	CATG	6 cut(s)	264, 280, 325, 336, 1019, 1295
CviQI	GTAC	6 cut(s)	79, 203, 294, 756, 1016, 1088
DdeI	CTNAG	4 cut(s)	127, 239, 1191, 1378
DpnI	GATC	5 cut(s)	323, 420, 437, 629, 1374
DpnII	GATC	5 cut(s)	321, 418, 435, 627, 1372
Eam1104I	CTCTTC	1 cut(s)	1117
EarI	CTCTTC	1 cut(s)	1117
EciI	GGCGGA	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	1294
Eco57I	CTGAAG	4 cut(s)	529, 617, 1026, 1164
Eco88I	CYCGRG	1 cut(s)	883
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	954
FaeI	CATG	6 cut(s)	267, 283, 328, 339, 1022, 1298
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FatI	CATG	6 cut(s)	263, 279, 324, 335, 1018, 1294
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	1372
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	191, 375
FokI	GGATG	2 cut(s)	742, 1161
Fsp4HI	GCNGC	2 cut(s)	191, 375
FspBI	CTAG	1 cut(s)	1205
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	2 cut(s)	191, 375
HaeIII	GGCC	2 cut(s)	836, 882
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	2 cut(s)	53, 366
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	6 cut(s)	267, 283, 328, 339, 1022, 1298
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	26, 450, 1109
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	736
Hpy166II	GTNNAC	2 cut(s)	499, 703
Hpy188III	TCNNGA	7 cut(s)	325, 439, 635, 786, 1170, 1205, 1295
Hpy8I	GTNNAC	2 cut(s)	499, 703
Hpy99I	CGWCG	2 cut(s)	19, 58
HpyAV	CCTTC	7 cut(s)	110, 120, 553, 632, 641, 1139, 1147
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	8 cut(s)	190, 335, 374, 610, 773, 782, 1022, 1269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	770, 779, 950
HpyF3I	CTNAG	4 cut(s)	127, 239, 1191, 1378
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	6 cut(s)	267, 283, 328, 339, 1022, 1298
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	1372
Kzo9I	GATC	5 cut(s)	321, 418, 435, 627, 1372
LmnI	GCTCC	2 cut(s)	577, 714
Lsp1109I	GCAGC	2 cut(s)	202, 386
LweI	GCATC	3 cut(s)	791, 953, 1356
MaeI	CTAG	1 cut(s)	1205
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	5 cut(s)	323, 420, 437, 629, 1374
MboI	GATC	5 cut(s)	321, 418, 435, 627, 1372
MflI	RGATCY	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	1103
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	241, 461, 720, 728, 804, 826, 1126
MroXI	GAANNNNTTC	1 cut(s)	1217
MseI	TTAA	3 cut(s)	584, 840, 854
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	245, 956
MvaI	CCWGG	1 cut(s)	956
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	770, 779, 950
NciI	CCSGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	5 cut(s)	321, 418, 435, 627, 1372
NlaIII	CATG	6 cut(s)	267, 283, 328, 339, 1022, 1298
NlaIV	GGNNCC	2 cut(s)	345, 716
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	2 cut(s)	267, 1022
PagI	TCATGA	2 cut(s)	324, 1294
PasI	CCCWGGG	1 cut(s)	955
PdmI	GAANNNNTTC	1 cut(s)	1217
PfeI	GAWTC	2 cut(s)	26, 450
PkrI	GCNGC	2 cut(s)	192, 376
PleI	GAGTC	1 cut(s)	1103
PpsI	GAGTC	1 cut(s)	1103
PsiI	TTATAA	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	954
PspN4I	GGNNCC	2 cut(s)	345, 716
PspPI	GGNCC	2 cut(s)	835, 881
PstI	CTGCAG	2 cut(s)	192, 376
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	435
RsaI	GTAC	6 cut(s)	80, 204, 295, 757, 1017, 1089
RsaNI	GTAC	6 cut(s)	79, 203, 294, 756, 1016, 1088
SaqAI	TTAA	3 cut(s)	584, 840, 854
SatI	GCNGC	2 cut(s)	191, 375
Sau3AI	GATC	5 cut(s)	321, 418, 435, 627, 1372
Sau96I	GGNCC	2 cut(s)	835, 881
SchI	GAGTC	1 cut(s)	1103
ScrFI	CCNGG	2 cut(s)	245, 956
SfaNI	GCATC	3 cut(s)	791, 953, 1356
SfcI	CTRYAG	2 cut(s)	188, 372
SmlI	CTYRAG	2 cut(s)	406, 839
SmoI	CTYRAG	2 cut(s)	406, 839
SsiI	CCGC	3 cut(s)	212, 347, 1363
SspI	AATATT	1 cut(s)	1200
SspMI	CTAG	1 cut(s)	1205
StyD4I	CCNGG	2 cut(s)	243, 954
TaaI	ACNGT	1 cut(s)	207
TatI	WGTACW	3 cut(s)	202, 1015, 1087
TfiI	GAWTC	2 cut(s)	26, 450
Tru1I	TTAA	3 cut(s)	584, 840, 854
Tru9I	TTAA	3 cut(s)	584, 840, 854
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	2 cut(s)	190, 374
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	296, 341, 1007, 1229
TspGWI	ACGGA	1 cut(s)	1358
TspRI	CASTG	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	839
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	3 cut(s)	329, 646, 1216
XbaI	TCTAGA	1 cut(s)	1204
XceI	RCATGY	2 cut(s)	267, 1022
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	1217
XspI	CTAG	1 cut(s)	1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.