Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000909.1

Orthogroup ID

OG0005423

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5244

Gene Structure 5244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000909.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

gaaaaagagattatatttgcattgtcacagactgcttatggactgtgcttgttctcagggtattgggtctactttcttcgttttcgtccatatagaagttctgctcttttccccttcagagcaaagaataagaagaattatgatggggagctgttaaagatgtgtgagttgtttgctttgcaatcctgtgtgaaattgatccttcaggaaggacaaaattttgttcttttacagtgggcaacatattataaccaagctgtatatggatttgtggacaatttagggagcctggtggtgaggatggtgtttcttccttttgaagaaagtacctatgctacatttgcaaggtctgcatcaggaaaagacccagataaggacaagaggttgggaggtagccttacagaagcccttaagctggttttgttaataggtcttatatttatggcgtttggcccgagttatgcttattctctcatcagattggtgtatggtcaaaaatggagtgatggggaagcatcaacagccctgggatattattgcttttatattattgttttggctgtgaatggaacttctgaagcatttgtacatgcagttgccaagaagaaccaacttctgtggtcaaatcttccatctgttctgataacaattatatatgtggtactgaatatcctgctggtaaactccgctggcgcggttggcttaattttggcaaattcattaaatatgattttgagaatattatactctggggcattcatcaagcattacttccaggattcttcctcattttctttttacaaatgcttacctgaaggatggaaggtcttgctgttttcaggaataaccactatcatttctgagagaatatttctagacaggaagaatttctgggcgacttttgttgttcattttaccattggggtcgcttgcttctgcacttcggcatttgtcatatatcgtcatgagagatcccttatcaacaaaatcattcccatcaacaggattttcccaagcatcaacaaaattgtccgcttccgtgatcactcagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

351

Amino Acids

39.93

Weight (kDa)

9.29

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07630 AT5G07630
fragaria_vesca	FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750 FvH4_3g41750
malus_domestica	MD11G1042200.v1.1
prunus_persica	Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1 Prupe.6G033300_v2.0.a1
pyrus_communis	pycom11g03630
rosa_chinensis	RchiOBHm_Chr5g0074831
rosa_laevigata	RLG00000036509
rosa_multiflora	Rmu_sc0000909.1_g000001 Rmu_sc0003945.1_g000001 Rmu_sc0005365.1_g000010
rosa_roxburghii	Rroxscaffold_1G00006740
rosa_rugosa	Rorug05G0434700 Rorug05G0434800
rosa_samantha	Rh5AG492100 Rh5BG513500 Rh5CG537200 Rh5DG525600
rosa_wichuraiana	Rw5G045590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	695
AciI	CCGC	3 cut(s)	687, 695, 1033
AclWI	GGATC	2 cut(s)	193, 966
AcsI	RAATTY	3 cut(s)	217, 715, 886
AcuI	CTGAAG	4 cut(s)	100, 188, 597, 834
AfaI	GTAC	3 cut(s)	328, 588, 663
AfiI	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	3 cut(s)	288, 525, 774
AluBI	AGCT	3 cut(s)	151, 257, 415
AluI	AGCT	3 cut(s)	151, 257, 415
AlwI	GGATC	2 cut(s)	193, 966
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	217, 715, 886
Asp700I	GAANNNNTTC	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BccI	CCATC	6 cut(s)	137, 295, 500, 640, 813, 1004
BciT130I	CCWGG	3 cut(s)	290, 527, 776
BclI	TGATCA	1 cut(s)	1042
BfaI	CTAG	1 cut(s)	875
BfrI	CTTAAG	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	290, 527, 776
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	3 cut(s)	290, 527, 776
BmsI	GCATC	3 cut(s)	362, 524, 1026
BsaJI	CCNNGG	2 cut(s)	525, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
BseBI	CCWGG	3 cut(s)	290, 527, 776
BseDI	CCNNGG	2 cut(s)	525, 526
BseGI	GGATG	2 cut(s)	306, 824
BseLI	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
BseMII	CTCAG	2 cut(s)	69, 852
BsgI	GTGCAG	1 cut(s)	922
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	373, 415, 1002
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	198, 971, 1042
BspACI	CCGC	3 cut(s)	687, 695, 1033
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	2 cut(s)	68, 853
BspFNI	CGCG	1 cut(s)	695
BspHI	TCATGA	1 cut(s)	964
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	193, 966
BspTI	CTTAAG	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	525, 526
BssMI	GATC	3 cut(s)	198, 971, 1042
Bst2UI	CCWGG	3 cut(s)	290, 527, 776
Bst4CI	ACNGT	2 cut(s)	45, 234
BstAFI	CTTAAG	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	691, 931
BstDEI	CTNAG	3 cut(s)	55, 861, 1048
BstF5I	GGATG	2 cut(s)	306, 824
BstFNI	CGCG	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	3 cut(s)	201, 974, 1045
BstMBI	GATC	3 cut(s)	198, 971, 1042
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 350, 521, 699
BstNI	CCWGG	3 cut(s)	290, 527, 776
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	288, 525, 774
BstUI	CGCG	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	971
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	306, 824
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	691, 931
CciI	TCATGA	1 cut(s)	964
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	327, 587, 662
CspCI	CAANNNNNGTGG	2 cut(s)	599, 634
CviAII	CATG	2 cut(s)	590, 965
CviQI	GTAC	3 cut(s)	327, 587, 662
DdeI	CTNAG	3 cut(s)	55, 861, 1048
DpnI	GATC	3 cut(s)	200, 973, 1044
DpnII	GATC	3 cut(s)	198, 971, 1042
Eco57I	CTGAAG	4 cut(s)	100, 188, 597, 834
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	288, 525, 774
FaeI	CATG	2 cut(s)	593, 968
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	2 cut(s)	589, 964
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	69
FokI	GGATG	2 cut(s)	313, 831
FspBI	CTAG	1 cut(s)	875
GlaI	GCGC	1 cut(s)	694
HaeIII	GGCC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	2 cut(s)	593, 968
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	1 cut(s)	779
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	70, 274, 682
Hpy188I	TCNGA	6 cut(s)	119, 479, 577, 642, 862, 1051
Hpy188III	TCNNGA	5 cut(s)	206, 357, 840, 875, 965
Hpy8I	GTNNAC	3 cut(s)	70, 274, 682
HpyAV	CCTTC	5 cut(s)	124, 203, 212, 809, 817
HpyCH4III	ACNGT	2 cut(s)	45, 234
HpyCH4V	TGCA	6 cut(s)	20, 181, 344, 353, 593, 939
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 350, 521, 699
HpyF3I	CTNAG	3 cut(s)	55, 861, 1048
Hsp92II	CATG	2 cut(s)	593, 968
HspAI	GCGC	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	3 cut(s)	198, 971, 1042
LmnI	GCTCC	2 cut(s)	148, 285
LweI	GCATC	3 cut(s)	362, 524, 1026
MaeI	CTAG	1 cut(s)	875
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	200, 973, 1044
MboI	GATC	3 cut(s)	198, 971, 1042
MboII	GAAGA	8 cut(s)	68, 145, 302, 332, 616, 620, 774, 895
MflI	RGATCY	1 cut(s)	971
MluCI	AATT	9 cut(s)	136, 194, 217, 277, 648, 705, 715, 886, 1026
MnlI	CCTC	4 cut(s)	291, 375, 383, 796
MroXI	GAANNNNTTC	1 cut(s)	887
MseI	TTAA	5 cut(s)	155, 411, 425, 704, 722
MspA1I	CMGCKG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	410
MspR9I	CCNGG	3 cut(s)	290, 527, 776
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	3 cut(s)	290, 527, 776
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	4 cut(s)	341, 350, 521, 699
NdeII	GATC	3 cut(s)	198, 971, 1042
NlaIII	CATG	2 cut(s)	593, 968
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	593
PagI	TCATGA	1 cut(s)	964
PasI	CCCWGGG	1 cut(s)	526
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	1 cut(s)	779
PfoI	TCCNGGA	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	288, 525, 774
PspGI	CCWGG	3 cut(s)	288, 525, 774
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	971
RsaI	GTAC	3 cut(s)	328, 588, 663
RsaNI	GTAC	3 cut(s)	327, 587, 662
SaqAI	TTAA	5 cut(s)	155, 411, 425, 704, 722
Sau3AI	GATC	3 cut(s)	198, 971, 1042
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	3 cut(s)	290, 527, 776
SfaNI	GCATC	3 cut(s)	362, 524, 1026
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	9 cut(s)	136, 194, 217, 277, 648, 705, 715, 886, 1026
SsiI	CCGC	3 cut(s)	687, 695, 1033
SspI	AATATT	2 cut(s)	741, 870
SspMI	CTAG	1 cut(s)	875
StyD4I	CCNGG	3 cut(s)	288, 525, 774
TaaI	ACNGT	2 cut(s)	45, 234
TasI	AATT	9 cut(s)	136, 194, 217, 277, 648, 705, 715, 886, 1026
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	5 cut(s)	155, 411, 425, 704, 722
Tru9I	TTAA	5 cut(s)	155, 411, 425, 704, 722
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	708, 748, 899
TspGWI	ACGGA	1 cut(s)	1028
TspRI	CASTG	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	410
XapI	RAATTY	3 cut(s)	217, 715, 886
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.